Anti-HIV Active Naphthyl Analogues of HEPT and DABO

 5-Isopropyl-6-naphthyl uracil and 5-isopropyl-6-naphthyl-2-thiouracil were alkylated to give N-1-(ethoxymethyl and methylthiomethyl) uracil and S²-cyclohexyl-thiouracil, respectively. 5-Ethyl-6-naphthyl uracil and 5-ethyl-6-naphthyl-2-thiouracil afforded N-1-(ethoxymethyl, methoxy-methyl, methylthiomethyl, acetoxyethoxy methyl and hydroxyethoxy methyl) uracil and S²-((2,2- diethoxyethyl), methoxycarbonylmethyl, ethoxycarbonylpropyl, methylthiomethyl, ethoxymethyl, methyl and cyclohexyl)-thiouracil upon alkylation.     

Synthesis and characterization of novel 1-[(2-hydroxyethoxy)methyl]-6-(phenylthio)thymine (HEPT) and dihydro-alkylthio-benzyloxopyrimidine (S-DABO) analogs containing a benzo[<Emphasis Type="Italic">d</Emphasis>]thiazol moiety

A series of novel dihydro-alkylthio-benzyloxopyrimidine (S-DABO) and 1-[(2-hydroxyethoxy) methyl]-6-(phenylthio)thymine (HEPT) analogs bearing a (benzo[d]thiazol-2-yl)methyl moiety at the C⁶ position of the pyrimidine core have been synthesized. 5-Allyl-6-{(benzo[d]thiazol-2-yl)methyl}-2-thiouracil and 5-allyl-6-{(benzo-[d]thiazol-2-yl)methyl}uracil were alkylated to give, respectively, S²- and N¹- ethoxymethyl and -methylthiomethyl uracil derivatives. 5-Allyl-6-[(benzo[d]thiazol-2-yl)methyl]-2-thiouracil was also alkylated by S² with methyl bromoacetate and hydrolyzed to the corresponding acid.     

New Emivirine (MKC-442) Analogues Containing a Tetrahydronaphthalene at C-6 and their Anti-HIV Activity

Summary. An 5-ethyl-2-thiouracil derivative with a 6-(tetrahydronaphthalen-1-yl)methyl substituent was synthesized by condensation of thiourea with an adequate β-ketoester which in turn was synthesized in a single step from (tetrahydronaphthalen-1-yl)acetonitrile. The latter starting material was also used to synthesize an analogously substituted tetrahydronaphthalen-1-yl substituted uracil with a locked conformation. Only the non-nucleoside derivatives prepared from the desulfurized substituted 2-thiouracil showed moderate activity against HIV whereas a corresponding non-nucleoside derivative was devoid of activity against HIV.     

A practical synthesis and spectroscopic study of new potentially biologically active S-lithocholic acid-substituted derivatives of 2-thiouracil

Five new S-3α-acetoxy-5β-lithocholic acid methyl ester-substituted derivatives of 2-thiouracil and 6-methyl-2-thiouracil have been prepared. 5-Morpholino-methyl-2-thiouracil, 5-piperidinomethyl-2-thiouracil, and 5-(4-methylpiperidino)methyl-2-thiouracil have been obtained via the Mannich reaction between 6-methyl-2-thiouracil, paraformaldehyde, and the cyclic secondary amines morpholine, piperidine, or 4-methylpiperidine in ethanol. The structures of the compounds were confirmed by spectral (¹H NMR, ¹³C NMR, and FT-IR) analyses and mass spectrometry. Estimation of the pharmacotherapeutic potential has been accomplished for the synthesized compounds on the basis of Prediction of Activity Spectra for Substances (PASS).     

Synthesis and Antiviral Activity of 1-{[2-(Phenoxy)ethoxy]methyl}uracil Derivatives

The synthesis of novel 1-{[2-(phenoxy)ethoxy]methyl}uracil derivatives with different substituents in positions and 6 of the pyrimidine ring has been carried out. It has been shown that the alkylation of trimethylsilyl derivatives of uracil with 2-(4-chlorophenoxy)- and 2-(4-methylphenoxy)ethoxymethyl chloride under Hilbert-Johnson reaction conditions gives N₍₁₎-substitution products. It was found that the 1-{ [2-(phenoxy)ethoxy]methyl}uracil derivatives show viral inhibition properties relative to human immunodeficiency type 1 virus in vitro. The most active compounds are 5-bromo-6-methyluracil derivatives which suppress viral reproduction by 50% at 7.2 and 7.8 micromolar concentrations.__________Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 5, pp. 726–731, May, 2005.     

Spectral correlation,antimicrobial and insect antifeedant activities of some 1-naphthyl keto-oxiranes

Thirteen optically active (αS, βR) 1-naphthyl keto-oxiranes (1-naphthyl-4-yl[3-(substituted phenyl)oxiran-2-yl]methanones) have been synthesised by phase transfer catalysed epoxidation of 1-naphthyl chalcones. The yields of oxiranes are more than 95%. The synthesized oxiranes have been characterized by IR, ¹H, ¹³C and MS spectra. The spectral data are correlated with Hammett substituent constants and Swain–Lupton parameters. From the regression analysis the effect of substituent on the group frequencies has been predicted. The antimicrobial and insect antifeedant activities of all synthesised oxiranes have been evaluated.     

n-Butyl by-products in the syntheses of 2-(1- and 2-naphthyl)pyridines via lithiation

By-products in the syntheses of 2-(1- and 2-naphthyl)pyridines by successive treatments of 1- and 2-bromonaphthalenes with (a) n-butyllithium in ether and (b) pyridine are identified as 5-butyl-2-(1-naphthyl)pyridine and, tentatively, 5-butyl-2-(2-naphthyl)pyridine, respectively. It is proposed that these by-products result from reaction of intermediate compounds 1-lithio-2-naphthyl-1,2-dihydropyridines and 1-bromobutane.     

New Emivirine (MKC-442) Analogues Containing a Tetrahydronaphthalene at C-6 and their Anti-HIV Activity

An 5-ethyl-2-thiouracil derivative with a 6-(tetrahydronaphthalen-1-yl)methyl substituent was synthesized by condensation of thiourea with an adequate β-ketoester which in turn was synthesized in a single step from (tetrahydronaphthalen-1-yl)acetonitrile. The latter starting material was also used to synthesize an analogously substituted tetrahydronaphthalen-1-yl substituted uracil with a locked conformation. Only the non-nucleoside derivatives prepared from the desulfurized substituted 2-thiouracil showed moderate activity against HIV whereas a corresponding non-nucleoside derivative was devoid of activity against HIV.     

Theoretical studies on the properties of uracil and its dimer upon thioketo substitution

The influences of thioketo substitution on the properties of uracil monomer and dimer and their interactions with Zn²⁺ have been systematically investigated at the B3LYP/6-311+G^*level of theory. Those properties include the structural characteristics, acidities, ionization potentials, and singlet–triplet energy gaps of SU monomers and their dimers, where SU=2-thiouracil, 4-thiouracil, and 2,4-dithiouracil, respectively. Computational results suggest that thioketo substitution leads to an increase in the acidities of the N-H groups for both uracil and its dimer, where the N₁–H group is still the most acidic site relative to that of N₃–H group. However, the opposite behaviors are true for the ionization potentials and the singlet–triplet energy gaps of uracil monomer and its dimer, suggesting that thiouracils are more susceptible to radiation damage relative to the unsubstituted uracil. For uracil and 2-thiouracil, the corresponding triplet excited-state geometries are predicted to be highly nonplanar compared with the planar geometries of the ground state as well as 4-thiouracil and 2,4-dithiouracil upon triplet excitation. As a rule, the intermolecular H-bonds involving the sulfur atom directly have been influenced more significant than those the oxygen atom directly involved for U::U and SU::SU base pairs upon ionization and excitation. Additionally, Zn²⁺ binding is expected to lead to an increase in the stability of U::U and SU::SU base pairs.     

New functional chiral P-based ligands and application in ruthenium-catalyzed enantioselective transfer hydrogenation of ketones

Metal-catalyzed asymmetric transfer hydrogenation is a powerful and practical method for the reduction of ketones to produce the corresponding secondary alcohols, which are valuable building blocks in the pharmaceutical, perfume, and agrochemical industries. Hence, a series of novel chiral β-amino alcohols were synthesized by chiral amines with regioselective ring opening of (S)-propylene oxide or reaction with (S)-(+)-2-hydroxypropyl p-toluenesulfonate by a straightforward method. The chiral ruthenium catalytic systems generated from [Ru(arene)(μ-Cl)Cl]₂ complexes and chiral phosphinite ligands based on amino alcohol derivatives were employed in asymmetric transfer hydrogenation of ketones to give the corresponding optically active alcohols; (2S)-1-{[(2S)-2-[(diphenylphosphanyl)oxy]propyl][(1R)-1-phenylethyl]amino}propan-2-yldiphenylphosphinitobis[dichol-oro(η⁶-benzene)ruthenium(II)] acts an excellent catalyst in the reduction of α-naphthyl methyl ketone, giving the corresponding alcohol with up to 99% ee. The substituents on the backbone of the ligands were found to have a remarkable effect on both the conversion and enantioselectivity of the catalysts. Furthermore, this transfer hydrogenation is characterized by low reversibility under these conditions.     

Copper and palladium complexes with substituted pyrimidine-2-thiones and 2-thiouracils: syntheses,spectral characterization,and X-ray crystallographic study

Copper(I) and palladium(II) complexes containing 5-acetyl-6-methyl-1,2,3,4-tetrahydropyrimidine-2-thione (L¹), ethyl 4,6-dimethyl-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate (L²), cis-5-acetyl-6-ethyl-5,6-dihydro-2-thiouracil (L³), and 5,6-dihydro-2-thiouracil (L⁴) have been synthesized. All complexes were characterized by elemental analysis, IR, ¹H, and ¹³C NMR spectroscopy. To assign bands in the IR spectra of L¹ and L² and complexes with Cu(I) and Pd(II), deuterium substitution of movable protons at N-atoms was used. The crystal structures of two compounds, [Cu(L²)₂Cl] and [Pd(L⁴)₂Cl₂], were determined by X-ray single-crystal and powder diffraction, respectively. In [Cu(L²)₂Cl], copper has a rare coordination number of three and triangular surrounding of two neutral L² molecules, coordinated through sulfurs, and chloride. In [Pd(L⁴)₂Cl₂], palladium has a standard square-planar geometry, formed by two uracil molecules and two chlorides. A new method for the synthesis of 5,6-dihydro-2-thiouracil, starting from β-aminopropionic acid, was suggested.     

Synthesis and anti-HIV-1 activity of a series of 1-(alkoxymethyl)-5-alkyl-6-(arylselenenyl)uracils and -2-thiouracils

A series of 1-(alkoxymethyl)-5-alkyl-6-(phenylselenenyl)uracils and -2-thiouracils modified at the 3- and/or 5-position of the C-6 phenylselenenyl ring with methyl or fluoro substituent has been synthesized and tested for their ability to inhibit HIV-1 replication. Lithiation of the acyclic uracil and 2-thiouracil derivatives 11-14 and 27-32 with lithium diisopropylamide or lithium bis(trimethylsilyl)amide followed by reaction with an appropriate diaryl diselenide afforded 6-arylselenenyl compounds 18-26 after removal of the tert-butyldimethylsilyl protecting group and 35-47 . Compounds 48-54 were prepared from compounds 38-44 by oxidative hydrolysis of the thione function. Of these compounds, 50 inhibited HIV -1 replication in human T₄ lymphoblastoid cells at a 50% effective concentration (EC₅₀) of 0.0047 μM with a selectivity index of >42600.     

Stereochemistry in Lewis acid-catalyzed silylation of alcohols, silanols, and methoxysilanes with optically active methyl(1-naphthyl)phenylsilane

Stereochemistry in silylation reactions of alcohols, silanols, and methoxysilanes with optically pure (R)-methyl(1-naphthyl)phenylsilane were studied in the presence of Lewis acid catalysts. Tris(pentafluorophenyl)borane [B(C₆F₅)₃] was found to be highly reactive and stereoselective in the reactions. Optically active (R)-(alkoxy)methyl(1-naphthyl)phenylsilanes with 91–97% ee were produced from alcohols through the inversion stereochemistry of the silane. Stereoselectivity in the reaction with triphenylsilanol was moderate (64% ee). (R)-1,3-Dimethyl-1-(1-naphthyl)-1,3,3-triphenyldisiloxane with 94% ee was obtained from the silane with (methoxy)methyldiphenylsilane. The reaction with (R)-(methoxy)methyl(1-naphthyl)phenylsilane (88% ee) gave (R, R)-1,3-dimethyl-1,3-di(1-naphthyl)-1,3-diphenyldisiloxane [(R, R):(R, S):(S, S) = 87:12:0.5]. The stereochemistry was proved to almost completely inversion and retention for the chiral silicon centers of the silane and methoxysilane, respectively.     

1H and 13C NMR study of the conformations of the atropisomers of some 1-(11-naphthyl)-2,4-dioxo-(or 2-thio-4-oxo)-hexahydro-pyriminides

The ¹H and ¹³C NMR spectra of the atropisomers of 6-(or 5-)-methyl-1-(1¹-naphthyl)-2, 4-dioxo-(or 2-thio-4-oxo)-hexahydro-pyrimidines, 1 to 4, are assigned on the basis of NOE and double resonance experiments. The syn-anti configurations of the isomers of 6-methyl-2,4-dioxo-pyrimidine follow from the close similarity of the NMR parameters to those observed with the isomers of the 6-methyl-2-thio derivative of known configuration. That of the 5-methyl derivatives was assigned from NOE and magnetic anisotropy effects of the naphthalene ring and of the (thio) amide group. Allylic strain between the naphthyl and 5-methyl groups makes the axial confomation prefered int he anti isomers. In the syn isomers, however, the equational and axial conformations are approximately equally populated, apparently due to interference between the remote benzene ring and the axial methyl group. The equatorial conformation is prepared with the 5-methyl derivatives.     

Multiple Enantioselection by an Enzyme-Catalyzed Transacylation Reaction

Multiply enantioselective enzyme-catalyzed transacylation reactions are described. Two instances of triply enantioselective enzyme-catalyzed transacylations are 1) the reaction of rac-1-indanol with rac-1,1′-bi-2-naphthy]-2,2′-dibutyrate to afford (S)-1-indanoL (R)-1-indanylacetate, (S)-1,1′-bi-2-naphthyl-2,2′-diol, and (R)-1,1′-bi-2-naphthyl-2,2′-dibutyrate and 2) the reaction of rac-1-indanol with rac-2,2′-bis(butyroxymethyl)biphenyl to afford (S)-1-indanol, (R)-1-indanylbutyrate, (S)-2,2′-biphenyldimethanol, and (R)-2,2′-bis(butyroxy-methyl)biphenyl. Doubly enantioselective enzyme-catalyzed transacylations are described according to two instances: 1) the reaction of rac-1-indanol with rac-1,1′-bi-2-naphthyl-2-ol-2′-butyrate afforded (S)-1-indanol, (R)-1-indanylacetate, (S)-1,1′-bi-2-naphthyl-2,2′-diol, and (R)-1,1′-bi-2-naphthyl-2-ol-2′-butyrate, and 2) the reaction of rac-1-indanol with 1,3,5-O-methylidne-2,4,6-tri-O-butyrate-myo-inositol to afford (S)-1 -indanol, (R)-l-indanylbutyrate, and 1,3,5-O-methylidne-2,6-di-O-butyrate-myo-inositol. Multiply enantioselective enzyme-catalyzed reactions have a merit of the enhancement of enantiomeric excess over singly enantioselective ones.     

Absolute configuration of 2-methoxy-2-(2-naphthyl)propionic acid as determined by the 1H NMR anisotropy method

2-Methoxy-2-(2-naphthyl)propionic acid 1 and 2-hydroxy-2-(2-naphthyl)propionic acid 2 were prepared by the Grignard reaction of 2-naphthylmagnesium bromide with (1R,2S,5R)-(−)-menthyl pyruvate. The absolute configurations of (+)-1 and (+)-2 were determined to be S by the ¹H NMR anisotropy method.     

Michael versus retro-Michael reaction in the regioselective synthesis of N-1 and N-3 uracil adducts

By controlling the temperature or reaction time in the base-catalysed Michael-type addition of 5-substituted uracil derivatives we were able to synthesise N-1 or N-3 uracil adducts using methyl acrylate and acrylonitrile as acceptors. The mechanism of this chemical inequivalence was established using ¹H NMR spectroscopic studies. The investigations revealed that formation of the N-1 adduct was achievable under kinetically controlled conditions irrespective to the type of the base used (TEA, DBU). In turn, synthesis of the N-3 adducts proceeded from the initially formed N-1,N-3 diadduct via a retro-Michael reaction which dominates at elevated temperature or prolonged reaction time.     

Synthesis of new uracil non‐nucleoside derivatives as potential inhibitors of HIV‐1

6‐(2‐Phenylethyl) and 6‐cyclohexyl 5‐cyanouracils ( 1a,b ) were synthesized and reacted with chloromethyl ethyl ether, benzyl chloromethyl ether, chloromethyl methyl sulfide and (2‐acetoxyethoxy)methyl bromide. New uracil analogues of (S)‐DHPA were synthesized by reaction of compounds ( 1a,b ) with ((S)‐2,2‐dimethyl‐1,3‐dioxolane‐4‐yl) alkyl p‐toluenesulfonate.     

Investigation of nitrogen-containing heterocyclic free radicals

Dimers of 4(5)-phenyl-5(4)-β-naphthyl-2-phenyl-substituted imidazolyl radicals were synthesized in order to study the effect of a β-naphthyl group on the stability of triaryl-imidazolyl radicals, and the rate constants and energies of activation for dissociation of the dimers were determined. The presence of a β-naphthyl group in the bistriarylimid-azolyl molecule facilitates its dissociation into radicals as compared with bistriphenyl-imidazolyl.     

Mild Deprotection of Methyl,Benzyl, Methoxymethyl,Methylthiomethyl, Methoxyethoxymethyl,and β-(Trimethylsilyl)-ethoxymethyl Esters with AlCl3-N,N-dimethylaniline

Methyl, benzyl, methoxymethyl, methylthiomethyl, methoxyethoxymethyl, and β-(trimethylsilyl)ethoxymethyl esters could be cleaved readily under mild conditions on treatment with AlCl₃-N,N-dimethylaniline in CH₂Cl₂ to give parent carboxylic acids in high yields.