Characterization of milled wood lignin and ethanol organosolv lignin from miscanthus

Ethanol organosolv lignin extracted from Miscanthus × giganteus (using the following conditions: T = 190 °C, t = 60 min, sulfuric acid = 1.2% w/w, EtOH/H₂O = 0.65) and milled wood lignin from Miscanthus × giganteus were subjected to a comprehensive structural characterization by ¹³C, ³¹P NMR, FTIR, UV spectroscopies and size exclusion chromatography. The results showed that Miscanthus lignin is an H/G/S type (4%, 52%, 44% respectively) with ∼0.41 β-O-4 linkage per aromatic ring and contains coumarylate linkages (0.1/Ar). It was shown that during organosolv treatment, cleavage of β-O-4 linkages and of ester bond (acetyl and coumaryl residues) was the major mechanisms of lignin breakdown but the process did not significantly change the core of the lignin structure.     

Solubility and rate of dissolution for Miscanthus in hydrophilic ionic liquids

Miscanthus is a potential feedstock for the production of biofuels. Lignocellulosic biomass is not soluble in conventional solvents, but Miscanthus and other lignocellulosic biomass have reasonable solubilities in some ionic liquids. The solubility of Miscanthus in a variety of hydrophilic ionic liquids was measured as a function of particle size, temperature and time for dissolution. In addition to temperature and time, the ionic liquid anion has a significant effect on solubility and rate of dissolution. The moisture content of Miscanthus lowers its solubility in certain ionic liquids. Chloride, acetate, and phosphate-based ionic liquids favor solubility. A tentative correlation for the solubility of Miscanthus is proposed in terms of Abraham solvation parameters obtained from quantum-chemical model COSMO-RS (Conductor like Screening Model-Real Solvents).     

Impact of formic/acetic acid and ammonia pre-treatments on chemical structure and physico-chemical properties of Miscanthus x giganteus lignins

Miscanthus x giganteus was treated with formic acid/acetic acid/water (30/50/20 v/v) for 3 h at 107 °C and 80 °C, and soaking in aqueous ammonia (25% w/w) for 6 h at 60 °C. The effects of these fractionation processes on chemical structure, physico-chemical properties and antioxidant activity of extracted lignins were investigated. Lignins were characterized by their purity, carbohydrate composition, thermal stability, molecular weight and by Fourier transform infrared (FTIR), 1H and quantitative 13C nuclear magnetic resonance (NMR), adiabatic broadband {13C-1H} 2D heteronuclear (multiplicity edited) single quantum coherence (g-HSQCAD). The radical scavenging activity towards 2,2-diphenyl-1-picrylhydrazyl (DPPH) was also investigated. Formic/acetic acid pretreatment performed in milder conditions (80 °C for 3 h) gave a delignification percentage of 44.7% and soaking in aqueous ammonia 36.3%.Formic/acetic acid pretreatment performed in harsh conditions (107 °C for 3 h) was more effective for extensive delignification (86.5%) and delivered the most pure lignin (80%). The three lignin fractions contained carbohydrate in different extent: 3% for the lignin obtained after the formic/acetic acid pretreatment performed at 107 °C (FAL-107), 5.8% for the formic/acetic acid performed at 80 °C (FAL-80) and 13.7% for the ammonia lignin (AL). The acid pretreatment in harsh conditions (FAL-107) resulted in cleavage of β-O-4′ bonds and aromatic C-C. Repolymerisation was thought to originate from formation of new aromatic C-O linkages. Under milder conditions (FAL-80) less β-O-4′ linkages were broken and repolymerisation took place to a lesser extent. Ammonia lignin was not degraded to a significant extent and resulted in the highest weight average 3140 g mol⁻¹. Despite the fact of FAL-107 repolymerisation, significant phenolic hydroxyls remained free, explaining the greater antioxidant activity.     

Stabilizing effect of extractives on the photo-oxidation of Acacia confusa wood

This study shows the photo-stabilizing effect of extractives on wood. XPS and FTIR techniques were used to analyze the variations in chemical characteristics on the surfaces of non-extracted and extracted Acacia confusa heartwood after lightfastness test. XPS survey analyses reveal that non-extracted heartwood exhibits a higher O/C ratio than the extracted wood. Furthermore, results from the detailed analysis of C1s indicated that the photo-oxidative derivatives increased in both extracted and non-extracted specimens after lightfastness test. On extracted wood, the derivatives are mainly derived from lignin, whereas extractives are the major component responsible for the generation of derivatives on non-extracted wood surface. After leaching test of UV-irradiated specimens, it was noted that the degradation products were readily removed by water. More water-soluble derivatives were leached out from the extracted wood, although higher lignin content was observed on the non-extracted wood surface. In conclusion, it is shown that photodegradation of A. confusa wood can be retarded by extractives oxidation.     

Application of a detailed reaction mechanism to pyrolysis of Miscanthus giganteus

The objective of this contribution is to describe thermal degradation of Miscanthus giganteus by a detailed reaction mechanism. It includes degradation kinetics for cellulose, hemicellulose and lignin which constitute the major mass fractions of M. giganteus. Furthermore, the mechanism yields a detailed composition of product gases, and is therefore well-suited to predict evolution of both thermal decomposition and products. Therefore, the reaction mechanism was introduced to the Discrete Particle Method (DPM) that solves the coupled differential conservation equations for mass, momentum, species, and energy for a M. giganteus particle. Predicted results were compared to experimental data and yielded good agreement.     

Chemometric analysis of multiple species of Bacillus bacterial endospores using infrared spectroscopy: Discrimination to the strain level

Previous work using infrared spectroscopy has shown potential for rapid discrimination between bacteria in either their sporulated or vegetative states, as well as between bacteria and other common interferents. For species within one physiological state, however, distinction is far more challenging, and requires chemometrics. In the current study, we have narrowed the field of study by eliminating the confounding issues of vegetative cells as well as growth media and focused on using IR spectra to distinguish only between different species all in the sporulated state. Using principal component analysis (PCA) and a classification method based upon similarity measurements, we demonstrate a successful identification rate to the species level of 85% for Bacillus spores grown and sporulated in a glucose broth medium.     

Cyclic tetrapeptides from marine bacteria associated with the seaweed Diginea sp. and the sponge Halisarca ectofibrosa

A Pseudomonas sp. was cultured which was associated with the Japanese seaweed Diginea sp. Crude extracts prepared from this bacterial culture were found to inhibit the growth of other marine bacterial strains. From this bacterial culture, two new peptides cyclo-[phenylalanyl-prolyl-leucyl-prolyl] (3) and cyclo-[isoleucyl-prolyl-leucyl-alanyl] (4) have been isolated together with two known peptides (1) and (2). The crude extract from a culture of Pseudoalteromonas sp. associated with the Thai sponge Halisarca ectofibrosa was found to inhibit the growth of Bacillus subtilis and Vibrio anguillarum. Isolation studies yielded a fraction containing two peptides that were identified as cyclo-[phenylalanyl-leucyl]₂ (5) and cyclo-[leucyl-isoleucyl]₂ (6) by means of LC-MS and 2D NMR data. Absolute stereochemistry was confirmed by the synthesis of cyclo-[l-phenylalanyl-l-leucyl]₂. Peptides (1)-(3) were also isolated from this bacterial strain. None of the individual peptides isolated in this study showed antibiotic activity.     

Overlapping chemical and genetic diversity in Ligularia lamarum and Ligularia subspicata. Isolation of ten new eremophilanes and a new seco-bakkane compound

Root chemicals and DNA sequences were analyzed for Ligularialamarum samples collected in Yunnan and Sichuan Provinces of China and the relationship between the plant and Ligulariasubspicata, its taxonomically closest species, was examined. Both species produce furanoeremophilanes and eremophilan-8-one derivatives as the major components. Eleven new compounds, including a new seco-bakkane compound, were isolated. The two species were found to harbor overlapping intra-specific diversities with respect to the chemicals and the DNA sequences.     

Isolation and structure determination of pulicazine, a new sesquiterpene lactone from the Tunisian Pulicaria laciniata (Coss.et Kral.) Thell.

A new naturally occurring pseudo-guaianolide type sesquiterpene lactone named pulicazine along with ent-11β,15β-dihydroxykaur-16-en-19-oic acid is isolated from the Tunisian Pulicaria laciniata (Coss.et Kral.) Thell. flowers. Their structures were elucidated by NMR spectroscopy and their stereochemistries were established by X-ray diffraction.     

Novel monocyclic sester- and triterpenoids from the marine diatom, Rhizosolenia setigera

The structures of two polyunsaturated monocyclic triterpenes have been elucidated using NMR spectroscopy following their isolation from the common marine diatom, Rhizosolenia setigera. The structure of a related monocyclic sesterterpene is proposed on the basis of mass spectral comparisons with the two monocyclic triterpenes.     

FTIR spectroscopy and biochemical investigation of ethanol stressed yeast Pachysolen tannophilus

FTIR can assess multiple aspects of cell biochemistry and cytoplasmic components. The aim of this study was the FTIR examination of control and ethanol stressed Pachysolen tannophilus. The results of FTIR measurements were compared with those obtained by traditional biochemical methods. The data obtained with both FTIR and chemical methods, showed that ethanol stress led to changes in carbohydrate, lipids and proteins. This study demonstrates that the relative proportions of the major macromolecules contained in P. tannophilus cells and their changes in response to external stimuli can be determined rapidly, simultaneously and inexpensively using FTIR. The technique proved to be equally reliable to and less labour intensive than the more traditional chemical methods.     

The alkaloids of the mersinine group: a new subclass of the monoterpenoid indole alkaloids from Kopsia

A total of 16 alkaloids, exemplified by mersinine A and its congeners, and constituting a new subclass of the monoterpenoid indoles, were isolated exclusively and for the first time from Kopsia singapurensis. The structures of these alkaloids were established by spectroscopic methods and in some instances confirmed by X-ray diffraction analysis. A possible biogenetic route from an aspidofractinine precursor is proposed. Compounds 1, 2, 3, 9, and 10 were found to reverse multidrug-resistance in drug-resistant KB cells.     

Mersinaline and mersirachine, novel quinolinic alkaloids of the mersinine group from Kopsia

Two quinolinic alkaloids belonging to the novel mersinine subclass were isolated from Kopsia singapurensis. The structures of these alkaloids were established by spectroscopic methods and possible biogenetic relationships between these and the mersinine alkaloids are presented.     

On the conformational characteristics of the O,O,O-trimethyl selenophosphate molecule

Spectroscopic and theoretical studies were carried out for O,O,O-trimethyl selenophosphate molecule. DFT structural and vibrational calculations were performed at 6-311++G^∗∗ level. Ar/matrix-FTIR spectra were recorded. A coexistence of different conformers with C₃ and C₁ symmetries was detected at different temperatures. Spectral evidence of a lower energy C_s conformer was found. These conclusions are consistent with the results from DFT calculations. A tentative assignment of the features observed in the Ar/matrix-FTIR spectra is proposed.     

First straightforward synthesis of 1-hydroxy-3,4-dihydro-1H-benz[g]isochromene-5,10-dione and structure revision of a bioactive benz[g]isochromene-5,10-dione from Psychotria camponutans

For the first time, a synthesis of 1-hydroxy-3,4-dihydro-1H-benz[g]isochromene-5,10-dione (3), which is claimed to be a bioactive compound isolated from Psychotria camponutans, was achieved with a phthalide annulation reaction using 3-cyano-1(3H)-isobenzofuranone (5) and 5,6-dihydropyran-2-one (6) and subsequent reduction of the lactone moiety in the key steps. However, full spectral characterization of the synthesized target compound revealed that the isolated compound is not 1-hydroxy-3,4-dihydro-1H-benz[g]isochromene-5,10-dione (3). Structure revision shows the previously isolated compound to be the known psychorubrin (2).     

Coelodiol and coeloic acid, ent-isocopalane diterpenes from the Indonesian sponge Coelocarteria cfr. singaporensis

Two novel ent-isocopalane diterpenes, coelodiol (1) and coeloic acid (2), the latter characterized by an unique oxidative degradation of ring A, have been isolated from the Indonesian sponge Coelocarteria cfr. singaporensis. The stereostructure of these metabolites has been established through interpretation of NMR data and application of the exciton chirality CD method. Coelodiol (1) and coeloic acids (2) were found to inhibit the growth of MKN-45 cell line (human gastric adenocarcinoma).     

Spectroscopic analyses and chemical transformation for structure elucidation of two novel indole alkaloids from Gelsemium elegans

Two new monoterpenoid oxindole alkaloids, gelsevanillidine (1) having an additional vanillin residue on gelsenicine-type alkaloid and gelseoxazolidinine (2) possessing an unusual oxazolidine ring, were isolated from Gelsemium elegans. To confirm their structures, the chemical transformation of a humantenine-type alkaloid into gelsevanillidine (1) and the deacetoxy derivative of gelseoxazolidinine was performed.     

Acremines H-N, novel prenylated polyketide metabolites produced by a strain of Acremonium byssoides

Five novel metabolites, acremines H-N, have been isolated from malt extract-peptone-glucose agar cultures of a strain of Acremonium byssoides. Their structures and stereochemistry were elucidated using a combination of ¹³C and ¹H homo and heteronuclear 2D NMR experiments. Acremines H-N inhibited the germination of sporangia of Plasmopara viticola.     

Banchromene and other secondary metabolites from the endophytic fungus Fusarium sp. obtained from Piper guineense inhibit the motility of phytopathogenic Plasmopara viticola zoospores

A new chromene, (S)-banchromene (1), together with seven known compounds, ergosterol, beauvericin (2), fusaproliferin (3), radicinin (4), poly(3-hydroxybutyric acid) (PHB, 5), N-methylpyrrolidone and an inseparable mixture of isochromene derivatives 6a, 6b, were isolated from a culture of Fusarium sp. strain CAMKT24b1, an endophytic fungus from the leaves and twigs of Piper guineense (Piperaceae). The structures of these metabolites were elucidated on the basis of their spectroscopic data; the absolute configuration of 1 was determined by ab initio-calculation of the optical rotation. In tests with the zoospores of the grapevine downy mildew pathogen Plasmopara viticola, compounds 1–4 showed moderate to high levels of motility-impairing activity at concentrations as low as 2.5 μg/mL. Compound 2 was the most active, exhibiting both motility-halting and lytic activities. Furthermore, compounds 2 and 3 displayed significant cytotoxic activity against brine shrimp larvae (Artemia salina) at 10 μg/mL. This is the first report on motility inhibitory and lytic activities of metabolites from an endophytic Fusarium species against the zoospores of the downy mildew pathogen P. viticola.