Low frequency electric polarizability and zeta-potential of Escherichia coli HB101 (K-12) cells during inactivation with ethanol

The electric properties of bacteria determine their non-specific interactions with the environment, in particular their pathogenic activity. The electric polarizability of Escherichia coli HB101 (K-12 strain) was studied while inactivation with ethanol (20–40 vol.%). The current investigation might be regarded as a continuation of previous research on the polarizability of E. coli at lower ethanol concentration (≤ 20 vol.%) and higher frequencies (≥ 20 kHz). The bacteria polarizability at low frequencies (<10⁴ Hz) shows anomalies (unexpected increase in the polarizability at certain ethanol concentrations), while the parameter decreases with an increase in the ethanol concentration at higher frequencies. We investigated for the possible reasons causing the anomalies — in our case reduced to the medium dielectric permittivity, the average cell length and the surface electric charge density distribution, related to bacterial lipopolysaccharides. We suggest a hypothesis for the molecular mechanism of changing the surface charge of E. coli, carried by lipopolysaccharides, induced by the non-ionic ethanol.      

Effects of temperature inactivation of penicillin-binding protein 2 on envelope growth in Escherichia coli

The transition from rod-shaped to spheroidal cells was studied in a temperature-sensitive strain (SP45) of Escherichia coli K12, carrying a mutation (pbpA) in the gene coding for penicillin-binding protein 2 (PBP-2). This transition imposed by the restrictive temperature was associated with reduction of peptidoglycan/surface area and of cellular osmotic stability.Addition of nalidixic acid (20 μg/ml) at the temperature shift from 30 to 42°C resulted in lysis of some cells and appearance of spheroidal bulges along the cylinders in other cells, consistent with the hypothesis of envelope weakening due to inactivation of PBP-2.     

Polyene macrolide antibiotics: Mechanisms of inactivation,ways of stabilization,and methods of disposal of unusable drugs (Review)

Published data concerning various mechanisms of the inactivation of polyene macrolide antibiotics, ways of their stabilization, and search for new stable dosage forms prepared with the use of nanotechnology techniques were summarized. Environmentally acceptable ways of disposal of pharmaceutical waste, and in particular polyene macrolide antibiotics, were discussed.     

Sub-micromolar affinity of Escherichia coli NikR for Ni(II)

The dissociation constant of Ni(II) for Escherichia coli NikR was determined using three independent techniques, including binding kinetics, and shown to be in the sub-micromolar range.     

Electrochemically assisted photocatalytic inactivation of Escherichia coli under visible light using a ZnIn2S4 film electrode

ZnIn2S4 film was fabricated on Ti substrate by a two-step approach including electrodeposition and annealing. The film obtained after electrodeposition was composed of Zn, In, and S. Then this precursor film was gradually converted to hexagonal phase ZnIn2S4 during the process of annealing in a nitrogen flow. The crystallographic structures and photoresponse ability of the film could be affected significantly by the annealing temperature. From diffuse reflection spectra, ZnIn2S4 film annealed at 500 degrees C exhibited the highest absorption intensity in visible light region among all the samples, resulting in a high photoresponse in the electrochemical measurement. The microstructures of ZnIn2S4 were characterized by transmission electron microscopy, and the results indicated that the interlayer distance was 0.295 nm, corresponding to d(104) space of hexagonal ZnIn2S4. Energy-dispersive X-ray spectra showed that the atomic ratio of Zn:In:S was 9.3:20.3:39.5, which was close to the stoichiometry ZnIn2S4. The photocatalytic ability of ZnIn2S4 was investigated by photoelectrocatalytic inactivation of Escherichia coli ( E. coli) with the initial concentration of approximately 3 x 10(8) colony forming units per milliliter. More than 3 logs of E. coli were killed within 60 min with the ZnIn2S4 film under visible light, and when the photocatalytic process was assisted by a 0.6 V positive potential, no surviving bacteria were detected after 60 min of inactivation.     

Identification of Novel Inhibitors of Escherichia coli DNA Ligase (LigA)

Present in all organisms, DNA ligases catalyse the formation of a phosphodiester bond between a 3′ hydroxyl and a 5′ phosphate, a reaction that is essential for maintaining genome integrity during replication and repair. Eubacterial DNA ligases use NAD⁺ as a cofactor and possess low sequence and structural homology relative to eukaryotic DNA ligases which use ATP as a cofactor. These key differences enable specific targeting of bacterial DNA ligases as an antibacterial strategy. In this study, four small molecule accessible sites within functionally important regions of Escherichia coli ligase (EC-LigA) were identified using in silico methods. Molecular docking was then used to screen for small molecules predicted to bind to these sites. Eight candidate inhibitors were then screened for inhibitory activity in an in vitro ligase assay. Five of these (geneticin, chlorhexidine, glutathione (reduced), imidazolidinyl urea and 2-(aminomethyl)imidazole) showed dose-dependent inhibition of EC-LigA with half maximal inhibitory concentrations (IC₅₀) in the micromolar to millimolar range (11–2600 µM). Two (geneticin and chlorhexidine) were predicted to bind to a region of EC-LigA that has not been directly investigated previously, raising the possibility that there may be amino acids within this region that are important for EC-LigA activity or that the function of essential residues proximal to this region are impacted by inhibitor interactions with this region. We anticipate that the identified small molecule binding sites and inhibitors could be pursued as part of an antibacterial strategy targeting bacterial DNA ligases.     

Mononuclear metal (II) complexes of a Bis(organoamido)phosphate ligand with antimicrobial activities against Escherichia coli

A new tripodal ligand [PO(NH²MePy)₃] ( L ) (²MePy = 2‐(4‐methyl pyridyl)) have been synthesized by treating phosphorous oxychloride with 2‐Amino‐4‐methylpyridine in toluene under refluxing condition. The ligand was appeared as a white solid and characterized by several standard analytical and spectroscopic techniques such as FT‐IR, NMR (¹H, ¹³C{¹H} and ³¹P{¹H}) and ESI‐MS spectroscopy. The ligand ( L ) undergone metal‐assisted hydrolysis of one P–N bond when treated it with hydrated metal nitrates, M(NO₃)₂·xH₂O (M = Zn, Cu, Co and Ni) under hydrothermal reaction condition in DMF‐H₂O (1:1). This results in the formation of four mononuclear complexes [{PO₂(NH²MePy)₂}₂M] [M = Zn ( 1 ), Cu ( 2 ), Co ( 3 ), Ni ( 4 )], where ligand ( L ) hydrolyses to a anionic bis(organoamido)phosphate, [PO₂(NH²MePy)₂]⁻. All complexes were completely characterized by various analytical techniques and their solid state molecular structures were established by single crystal X‐ray diffraction. All complexes are isostructural with a metal (II) ion situating at the centre of a distorted octahedron. Two tridentate [PO₂(NH²MePy)₂]⁻ ligands are coordinated to metal(II) ion through N‐ and O‐donor atoms, thus neutralizing the charge of the complex. Optical properties of all complexes in solid state have been studied. Moreover, antimicrobial activities of complexes 1 – 4 have been explored. To the best of our knowledge, this is the first report of such compounds investigated for their antimicrobial activities.     

Antibacterial Properties of a Kind of Schiff Base and Its Neodymium(III) and Zn(II) Complex (ZnNdL) on Escherichia coli

The microcalorimetric and electronic microscopy methods were used to study the antibacterial activity of a Schiff base and its complex ZnNdL on Escherichia coli. The metabolic power‐time curves of the bacteria treated with the compounds were obtained, and the thermokinetic parameters were analyzed. The results show that the compounds (H₂L, ZnNdL) have good activity on aerobic multiplying metabolism of E. coli, with the values of IC₅₀ 57.0 and 54.4 mg·L^?1, respectively. In order to further investigate their mechanism on E. coli, transmission electronic microscopy and scanning electronic micrography were used to study the cell membrane change induced by the dibasic quadridentate Schiff base and its neodymium(III) complex. At a low concentration of the compound, the flagellum was inhibited and the cell did not show distinct changes. However, the flagella around the cell membrane were exfoliated, the morphology of E. coli was changed from a rod shape into a spherical shape or a short rod, and the flagella disappeared completely at a high concentration. The drug permeability into cell membrane was investigated by fluorescence quenching of probe dis‐C₃‐(5), which suggested that H₂L and ZnNdL could influence on the intra and extra cell membrane.     

Effects of ELF Magnetic Field in Combination with Iron(III) Chloride (FeCl3) on Cellular Growth and Surface Morphology of Escherichia coli (E. coli)

This study investigated the effects of extremely low frequency (ELF) magnetic field with/without iron(III) chloride (FeCl₃) on bacterial growth and morphology. The ELF exposures were carried out using a pair of Helmholtz coil-based ELF exposure system which was designed to generate 50 Hz sinusoidal magnetic field. The field was approximately uniform throughout the axis of the coil pair. The samples which were treated or non-treated with different concentrations FeCl₃ were exposed to 50 Hz, 2 millitesla (mT) magnetic field for 24 h. ELF effect on viability was assessed in terms of viable colony counts (in colony-forming unit per milliliter) with the standard plate count technique. Scanning electron microscopy was used to investigate the magnetic field effect on surface morphology of Escherichia coli. No significant results were seen in terms of cell viability between ELF and sham-exposed bacterial strains. Similarly, FeCl₃ treatment did not change cell viability of E. coli samples. However, we observed some morphological changes on E. coli cell surfaces. Pore formations and membrane destruction were seen on the surface of 24 h ELF field-exposed cells. We concluded that ELF magnetic field exposure at 2 mT does not affect cell viability; however, it may affect bacterial surface morphology.     

Ultraviolet action spectra for DNA dimer induction, lethality, and mutagenesis in Escherichia coli with emphasis on the UVB region

Abstract —Ultraviolet (UV) action spectra were obtained for lethality and mutagenesis (reversion to tryptophan independence) in Escherichia coli WP2s for wavelengths 254–405 nm with detailed analysis in the UVB region (290–320 nm). Parallel chemical assay yields of pyrimidine dimers in DNA of E. coli RT4 were determined at the same wavelengths. Spectral regions isolated from a Xe arc and resonance lines from a high-pressure Hg-Xe arc lamp were both used for irradiation. In all cases, precise energy distributions throughout the isolated Xe bands regions were defined.
Lethality, mutagenesis, and dimer induction all decreased in efficiency in a similar fashion as the wavelengths of the radiation increased. Between 300 and 320 nm, all characteristics measured showed differences of about two and a half orders of magnitude. Between these wavelengths, the values of the three end points used either coincide with or parallel the absorption spectrum of DNA. The mutagenesis action spectrum coincides closely with the absorption spectrum of DNA. The lethality spectrum is closely parallel to the mutagenicity spectrum; the points, however, consistently occur at about 2 nm longer wavelengths. A calculation derived from the slope of the UVB spectra reveals that a 1-nm shift of the solar UV spectrum to shorter wavelengths would result in a 35% increase in its mutagenic potential. At 325 nm, both biological action spectra show sharp decreases in slope. In addition, above 325 nm the spectra for lethality. mutagenicity, and dimer formation diverge sharply; lethalities at these UVA wavelengths were approximately tenfold greater relative to mutagenicity than at shorter wavelengths. The relative yield of dimer formation by 365 nm radiation is intermediate between the yields for lethality and mutagenesis.     

Molybdenum site structure of Escherichia coli YedY, a novel bacterial oxidoreductase

We report a structural characterization using X-ray absorption spectroscopy of the molybdenum site of Escherichia coli YedY, a novel oxidoreductase related to be the sulfite oxidase family of molybdenum enzymes. We find that the enzyme can exist in Mo(V) and Mo(IV) oxidation states but cannot be readily oxidized to the Mo(VI) form. Mo(V) YedY has molybdenum coordination similar to that of sulfite oxidase, with one Mo═O at 1.71 ?, three Mo-S at 2.39 ?, and one Mo-OH at 2.09 ?, which elongates to 2.20 ? upon reduction to Mo(IV), indicating Mo-OH(2) coordination. The Mo(V) enzyme also possesses a long Mo-O coordination at 2.64 ?, which may be due to oxygen coordination by Asn-45 O(δ), with Mo-O(δ) approximately trans to the Mo═O group. A comparison with sulfite oxidase indicates that YedY possesses a much more uniform Mo-S coordination, with a maximum permitted deviation of less than 0.05 ?. Our results indicate that the YedY active site shows considerable similarity to but also important differences from that of reduced forms of sulfite oxidase.     

Intracellular release of recombinant green fluorescent protein (gfp uv ) from Escherichia coli

The recombinant green fluorescent protein (gfp _uv ) was expressed by Escherichia coli DH5-α cells transformed with the plasmid pGFPuv. The gfp _uv was selectively permeabilized from the cells in buffer solution (25 mM Tris-HCl, pH 8.0), after freezing (−70°C for 15 h), by four freeze (−20°C)/thaw cycles interlaid by sonication. The average content of released gfp _uv (experiment 2) was 7.76, 34.58, 39.38, 12.90, and 5.38%, for the initial freezing (−70°C) and the first, second, third and fourth freeze/thaw cycles, respectively. Superfusion on freezing was observed between −11°C and −14°C, after which it reached −20°C at 0.83°C/min.     

Biosynthesis of (R)-3-hydroxyalkanoic acids by metabolically engineered Escherichia coli

An efficient system for the production of (R)-hydroxyalkanoicacids (RHAs) was developed in natural polyhydroxyalkanoate (PHA)-producing bacteria and recombinant Escherichia coli. Acidic alcoholysis of purified PHA and in vivo depolymerization of PHA accumulated in the cells allowed the production of RHAs. In recombinant E. coli, RHA production was achieved by removing CoA from (R)-3-hydroxyacyl-CoA and by in vivo depolymerization of PHA. When the recombinant E. coli harboring the Ralstonia eutropha PHA biosynthesis genes and the depolymerase gene was cultured in a complex or a chemically defined medium containing glucose, (R)-3-hydroxybutyric acid (R3HB) was produced as monomers and dimers. R3HB dimers could be efficiently converted to monomers by mild alkaline heat treatment. A stable recombinant E. coli strain in which the R. eutropha PHA biosynthesis genes were integrated into the chromosome disrupting the pta gene was constructed and examined for the production of R3HB. When the R. eutropha intracellular depolymerase gene was expressed by using a stable plasmid containing the hok/sok locus of plasmid R1, R3HB could be efficiently produced.     

Biochemical study for the effect of henna (Lawsonia inermis) on Escherichia coli

Leaf samples of Lawsonia inermis (Li) were examined for their antimicrobial potential. Broth extracts in different concentrations were prepared and bioassayed in vitro for the growth of Escherichia coli. The growth of E. coli pathogen was inhibited to various degrees by increasing the concentration of the herbal powder. In addition to the observed alterations which were detected electrophoretically in the protein pattern, were activities of the amylase enzyme and glycoprotein fractions. The protein pattern has one common band of Rf 0.47 and two characteristic bands of Rf 0.36 and Rf 0.42 for E. coli sample. The quantitative mutation was observed in the bacteria with different concentrations of L. inermis compared with the control. Some types of proteins in E. coli completely disappeared upon being S.I affected. The amylase pattern showed one common band with Rf 0.037 and two characteristic bands with Rf 0.18 and Rf 0.37 for E. coli sample. The obvious quantitative mutation observed in bacteria with different concentrations of L. inermis compared with E. coli. The glycoprotein pattern recorded one common band at R₁ with Rf 0.94 for E. coli sample and bacteria inoculated with different concentrations of L. inermis. These results confirmed the antibacterial activity of henna leaves and supported the traditional use of the plant in therapy of bacterial infections and disturbances that occurred at the biochemical level. The broth extract of the L. inermis leaves showed obvious antibacterial activity against E. coli.     

Photoreaction Cycle of Phoborhodopsin (Sensory Rhodopsin II) from Halobacterium salinarum Expressed in Escherichia coli

Phoborhodopsin (pR; also called sensory rhodopsin II, SRII) is a photoreceptor of negative phototaxis of halobacteria. The studies of photochemical properties of this pigment are not many because the amount of the pigment is small and the stability is low. Recently an expression system of phoborhodopsin from Halobacterium salinarum (called salinarum phoborhodopsin, spR; also HsSRII) in Escherichia coli and purification method has been developed (Mironova et al. [2005] FEBS Lett., 579, 3147–3151), which enables detailed studies on the photochemical properties of spR. In the present work, the photoreaction cycle of E. coli-expressed spR was studied by low-temperature spectroscopy and flash photolysis. Formations of K-, M-, O-like intermediates and P480 were reconfirmed as reported previously. New findings are as follows. (1) The K-like intermediate (P500) was a mixture of two photoproducts. (2) Formation of L-like intermediate (P482) was observed by low-temperature spectroscopy and flash photolysis at room temperature. (3) On long irradiation of spR at 20°C, formation of a new photoproduct P370 was observed and it decayed to the original spR in the dark with a decay half time of 190 min. Based on these results the similarities and dissimilarities between spR and ppR are discussed.     

Production,purification and partial characterization of a new adhesive factor (F42) produced by enterotoxigenic Escherichia coli isolated from pigs

Production of the F42 adhesive factor by porcine enterotoxigenic Escherichia coli (ETEC) grown on minimal solid medium was glucose-dependent. The addition of alanine and sodium acetate to this medium repressed the expression of this antigen whose production was also inhibited when the pH of the growing medium was lower than 7.4. The antigen was extracted from F42-positive ETEC grown in minimal liquid medium supplemented with 0.5% glucose. The cells were suspended in buffered 1 M NaCl and heated at 60°C. The supernatant was then treated with ammonium sulphate and the resulting precipitate treated with deoxycholate followed by chromatography of the deoxycholate-soluble material on Sepharose-4B. The molecular weight of F42 purified antigen was near 31,000 daltons and its pI 3.2, as determined by polyacrylamide gel electrophoresis and isoelectric focusing, respectively. Immunoelectrophoretic studies showed that the purified F42 antigen presented a slight anodic migration and was recognized only by its homologous antiserum.     

Base pairing within the psi32,psi39-modified anticodon arm of Escherichia coli tRNA(Phe)

The base-base hydrogen bond interactions of the psi32,psi39-modified anticodon arm of Escherichia coli tRNAPhe have been investigated using heteronuclear NMR spectroscopy. psi32 and psi39 were enzymatically introduced into a [13C,15N]-isotopically enriched RNA sequence corresponding to the tRNAPhe anticodon arm. Both the psi32-A38 and A31-psi39 nucleotide pairs form Watson-Crick base pairing schemes and the anticodon nucleotides adopt a triloop conformation. Similar effects were observed previously with D2-isopentenyl modification of the A37 N6 that also is native to the tRNAPhe anticodon arm. These results demonstrate that the individual modifications are not sufficient to produce the 32-38 bifurcated hydrogen bond or the U-turn motifs that are observed in crystal structures of tRNAs and tRNA-protein complexes. Thus the formation of these conserved structural features in solution likely require the synergistic interaction of multiple modifications.     

Construction, expression, and characterization of recombinant hirudin in Escherichia coli

The mutant gene of HV2-K47 was obtained by polymerase chain reaction-directed mutagenesis and expressed in Escherichia coli. Many elements that could affect its expression level were compared. The product was purified to homogeneity via three chromatographic steps—ion exchange, gel filtration, and reverse phase chromatography—on the AKTA Explorer System. The antithrombin activity of HV2-K47 is much higher than that of recombinant HV2. Some properties and expression conditions were investigated systematically, which would be useful for further studies of hirudin and other small proteins.