Vibrational spectroscopic and density functional theory studies of chloranil-imidazole interaction

The present work reports vibrational spectra and density functional theory calculations for chloranil, imidazole and their complexes. The experimentally observed infrared and Raman bands have been assigned with the help of calculated vibrational frequencies and potential energy distribution analysis. Some bands of chloranil and imidazole have been found to shift on the complex formation due to partial electronic charge transfer from imidazole to chloranil. The charge transfer between these molecules is also corroborated by the electronic absorption spectroscopy and calculations. The theoretical values of the interaction energy of various possible chloranil-imidazole interactions suggest that the two molecules interact preferably via N and H atoms of imidazole and CO group of chloranil with their molecular planes almost perpendicular to each other.     

微过氧化物酶水溶液的ABEEM/MM动力学模拟

应用原子-键电负性均衡浮动电荷分子力场(ABEEM/MM), 对微过氧化物酶水溶液进行了分子动力学模拟. 研究了水溶液对微过氧化物酶的结构, 血红素的皱裂构象以及轴配体咪唑基的取向的影响. 结果表明, 在水溶液中微过氧化物酶的骨架氨基酸是稳定的, 而血红素的皱裂构象在水分子的作用下趋于平面. 与血红素轴配体咪唑基键连的组氨酸决定着咪唑基的空间取向, 而咪唑基与血红素侧链的丙酸基的静电作用对其取向仅起次要作用.     

Electrostatic features of molecular recognition by cyclic urea mimics of chymotrypsin

The molecular electrostatic-potential pattern was used to investigate the electrostatic features of molecular recognition by two cyclic urea mimics of the active site of α-chymotrypsin. The structures of the mimics were obtained by molecular-mechanics evaluation of the conformational potential-energy surface of the molecules. Calculations were done by using two different atomic point-charge sets in order to assess the effect of charge on the electrostatic potential pattern. The molecules studies were: (1) a “full” mimic of chymotrypsin containing the hydroxyl, imidazole, and carboxylate anion functionalities typical of the active site of the enzyme, and (2) a “partial” mimic with only the hydroxyl and imidazole functional groups. Comparison of the molecular electrostatic-potential patterns of the two mimics in both charge sets showed that the largest differences were due to the structural addition of the carboxylate anion, rather than any particular differences in the choice of atomic point charge. For the full mimic, the pattern was essentially dominated by the negative charge on the carboxylate. Small structural changes which optimized the orientation of the catalytic components had little effect on the electrostatic potential pattern of the molecule. In the absence of the anionic functionality, greater differences were noted in the electrostatic potential pattern of the partial mimic in the two charge sets. The choice of atomic point charge was seen to influence the hydrogen-bonding pattern of the hydroxyl and imidazole moieties, resulting in differences in the spatial orientation of the electrostatic potential minima. In general, both charge sets produced molecular electrostatic-potential patterns which indicated that long-range electrostatic interactions would direct the cationic end of the substrate into the electron-rich binding site. However, specific local features of the electrostatic potential pattern were found to depend on point-charge set through the influence of charge on the hydrogen-bonding pattern.     

Comprehensive understanding of structure- photosensitivity relationships of photochromic [2.2]paracyclophane-bridged imidazole dimers

The photochromic [2.2]paracyclophane-bridged imidazole dimers show instantaneous coloration upon exposure to UV light and rapid fading in the dark. Experimental details for the enhancement of the photosensitivity and the unique photoisomerization of newly designed [2.2]paracyclophane-bridged imidazole dimers are demonstrated. We explored the structure-property relationships and demonstrated an efficient strategy for designing high-performance fast-photochromic molecules with increased photosensitivity to solar UVA radiation. The [2.2]paracyclophane-bridged imidazole dimer consists of two types of imidazole rings, Im1 and Im2. Im1 is characterized by a 6π electron system with an electron-donating characteristic, whereas Im2 is distinguished by a 4π electron system with an electron-withdrawing characteristic. The introduction of electron-donating substituents into the phenyl rings attached to the electron-withdrawing Im2 was proved to enhance the photosensitivity with the aid of the intramolecular charge transfer transitions. The unique photoisomerization resulting from the changes in the bonding manner between two imidazole rings was also investigated in detail.     

Control of ambipolar thin film architectures by co-self-assembling oligo(p-phenylenevinylene)s and perylene bisimides

Control of thin film morphology by self-assembly of, respectively, p-type oligo(p-phenylenevinylene)s (OPV)s and n-type perylenebisimides (PBI)s in solution prior to processing, results in film architectures consisting of uniform rodlike domains as shown by atomic force microscopy. Such films from self-assembled molecules show superior charge-carrier mobility in comparison with films processed from molecular dissolved molecules. Moreover, connecting the OPV and PBI building blocks through hydrogen-bonding interactions creates dyad complexes that cofacially stack in apolar solvents. Ambipolar field-effect transistors constructed from these dyad complexes show two independent pathways for charge transport. In strong contrast, processing of OPV and PBI, that are not connected by hydrogen bonds, form charge transfer donor-acceptor complexes that show no mobility in field-effect transistors presumably due to an unfavorable supramolecular organization.     

Crystal structure of {aquaimidazole-[2-(2-carbamoylhydrazone)-propionato]} copper(II) nitrate

The crystal structure of {aquaimidazole[2-(2-carbamoylhydrazone)-propionato]}copper(II) nitrate [Cu(L)Im(H₂O)]NO₃ (I), where HL is the semicarbazone of pyruvic acid, Im is imidazole, is dtermined. The crystal structure of I contains two independent complexes IA and IB in which copper atoms coordinate once deprotonated tridentate HL, imidazole, and water molecules. Outer spheres of the complexes contain nitrate ions. In the compounds studied the coordination polyhedron of the copper atom is a distorted tetragonal pyramid. Its base is composed of carboxyl and carbamide oxygen atoms, azomethine nitrogen of monodeprotonated HL molecules, and the imidazole nitrogen atom. In the crystal, nitrate ions and imidazole molecules link the complexes via hydrogen bonds into 2D networks parallel to the (010) plane. These networks in turn are in pairs arranged into layers along the [010] direction due to hydrogen bonds between water molecules and oxygen atoms of nitrate ions, and also by water molecules and O3 atoms of the neighboring 2D networks. In the crystal, the π-π stacking interaction is observed between the imidazole rings from different layers and there is also a N-O…Cg (π ring) interaction inside the layers.     

Theoretical study of isomerism/phase dependent charge transport properties in tris(8-hydroxyquinolinato)aluminum(III)

The charge carrier transporting ability in the polymorphism of tris(8-hydroxyquinolinato)aluminum(III) (Alq(3)) has been studied using density functional theory (DFT) and Marcus charge transport theory. α- and β-Alq(3) composed of mer-Alq(3) molecules have stronger electron-transporting property (n-type materials) compared with their hole-transporting ability. In contrast, γ- and δ-Alq(3) formed by fac-Alq(3) molecules possess stronger hole-transporting character than their electron-transporting ability. The detailed theoretical calculations indicate the reason lies in the differences of HOMO and LUMO distribution states of the two kinds of isomers, and the different molecular packing modes of charge-transporting pathways for different phases.     

Small Molecule: Polymer Blends for N-type Organic Thin Film Transistors via Bar-coating in Air

Fabricating n-type organic thin film transistors(OTFTs)based on small molecules via solution processing under atmospheric conditions remains challenging.Blending small molecules with polymer is an effective strategy to improve the solution processibility and air stability of the resulted devices.In this study,polystyrene was chosen to blend with n-type small molecule DPP1012-4F to enhance the continuity of the semiconductor layer and maintain a favorable edge-on stacking of semiconductors.The introduction of high-boiling point 1-chloronaphthalene as a solvent additive in the blending system can reduce the grain boundary defects in the microscopic morphology.These changes in aggregation behavior are confirmed by X-ray diffraction,atomic force microscopy and polarized optical microscopy analyses.Via bar-coating of the semiconductor layers in air,the electron mobility of the resulted OTFTs under the optimal condition is 0.73 cm2·V–1·s–1,which is amongst the highest n-type small molecule-based OTFTs with active layers prepared in air up to now.These results show a great potential of the blending strategy in industrial roll-to-roll manufacture of high-mobility n-type OTFTs.     

Ultrahigh field MAS NMR dipolar correlation spectroscopy of the histidine residues in light-harvesting complex II from photosynthetic bacteria reveals partial internal charge transfer in the B850/His complex.

Low-temperature 15N and 13C CP/MAS (cross-polarization/magic angle spinning) NMR has been used to analyze BChl-histidine interactions and the electronic structure of histidine residues in the light-harvesting complex II (LH2) of Rhodopseudomonas acidophila. The histidines were selectively labeled at both or one of the two nitrogen sites of the imidazole ring. The resonances of histidine nitrogens that are interacting with B850 BChl a have been assigned. Specific 15N labeling confirmed that it is the tau-nitrogen of histidines which is ligated to Mg2+ of B850 BChl molecules (beta-His30, alpha-His31). The pi-nitrogens of these Mg2+-bound histidines were found to be protonated and may be involved in hydrogen bond interactions. Comparison of the 2-D MAS NMR homonuclear (13C-13C) dipolar correlation spectrum of [13C6,15N3]-histidines in the LH2 complex with model systems in the solid state reveals two different classes of electronic structures from the histidines in the LH2. In terms of the 13C isotropic shifts, one corresponds to the neutral form of histidine and the other resembles a positively charged histidine species. 15N-13C double-CP/MAS NMR data provide evidence that the electronic structure of the histidines in the neutral BChl a/His complexes resembles the positive charge character form. While the Mg...15N isotropic shift confirms a partial positive charge transfer, its anisotropy is essentially of the lone pair type. This provides evidence that the hybridization structure corresponding to the neutral form of the imidazole is capable of "buffering" a significant amount of positive charge.     

A study of imidazole by the proton magnetic resonance method

The concentration dependence of the chemical shifts of the protons of imidazole in six polar organic solvents and water has been studied. In aqueous solutions an exchange of the NH protons between the imidazole and the water molecules takes place. In organic solvents, the position and half-width of the NH line of imidazole depend on the concentration. With an increase in the concentration, this line shifts in the downfield direction. The shift (1 ppm for a solution of imidazole in DMSO) may be due to the formation of an ordinary hydrogen bond (> NH N ) between the imidazole molecules.Translated from Khimiya Geterotsiklicheskikh Soedinenii, Vol. 6, No. 6, pp. 810–813, June, 1970.     

Inverse photoinduced electron transfer in large betaine molecules

We have used ab initio methods to confirm the existence of an inversion in the photoinduced intramolecular electron transfer in large conjugated pyridinium betaines, by examining compounds where an imidazole ring and a pyridinic group are connected by polyenic chains of increasing size. As these intermediary conjugated bridges get longer, an unusual net charge transfer is observed. The conjugated chain becomes a channel for the photoinduced electronic density flow, and the amount of charge at the donor and acceptor groups is reduced, while an inversion in the spatial localization of the frontier orbitals occurs. We discuss the corresponding implications on the nonlinear optical, photochemical and solvatochromic properties of these molecules.     

Rational Design of Ambipolar Organic Semiconductors: Is Core Planarity Central to Ambipolarity in Thiophene–Naphthalene Semiconductors?

Herein, we report a new family of naphthaleneamidinemonoimide-fused oligothiophene semiconductors designed for facile charge transport in organic field-effect transistors (OFETs). These molecules have planar skeletons that induce high degrees of crystallinity and hence good charge-transport properties. By modulating the length of the oligothiophene fragment, the majority carrier charge transport can be switched from n-type to ambipolar behavior. The highest FET performance is achieved for solution-processed films of 10-[(2,2'-bithiophen)-5-yl]-2-octylbenzo[lmn]thieno[3',4':4,5]imidazo[2,1-b][3,8]phenanthroline-1,3,6(2H)-trione (NDI-3 Tp), with optimized film mobilities of 2×10(-2) and 0.7×10(-2) cm(2) V(-1) s(-1) for electrons and holes, respectively. Finally, these planar semiconductors are compared with their twisted-skeleton counterparts, which exhibit only n-type mobility, in order to understand the origin of the ambipolarity in this new series of molecular semiconductors.     

Density Functional Theory Study of the Ionic Liquid [emim]OH and Complexes [emim]OH(H<Subscript>2</Subscript>O)<Subscript><Emphasis Type="Italic">n</Emphasis></Subscript> (<Emphasis Type="Italic">n</Emphasis>=1,2)

In this work, the structure of the ionic liquid [emim]OH and the influence of water molecules on this ionic liquid were studied by the DFT theory at the B3LYP/6-311++G** level. The calculation results indicate that [emim]OH cannot exist in the form of ion pairs, rather it is inclined to exist the form of water and imidazole carbene. Further studies showed that water mainly influences the anion: it can disperse the negative charge of the O atom of the OH⁻ anion and form hydroxyl–water clusters with the anion. When there are two water molecules in the ionic liquid, the system is most likely to exist in the form of ion-pairs that are composed of hydroxyl–water clusters and cations. Configurations formed near the C₂-H fragment of imidazole were favored, and hydrogen bonding interaction plays an important role in the ionic liquid system.     

Application of double-hybrid density functionals to charge transfer in N-substituted pentacenequinones

A set of N-heteroquinones, deriving from oligoacenes, have been recently proposed as n-type organic semiconductors with high electron mobilities in thin-film transistors. Generally speaking, this class of compounds self-assembles in neighboring π-stacks linked by weak hydrogen bonds. We aim at theoretically characterizing here the sequential charge transport (hopping) process expected to take place across these arrays of molecules. To do so, we need to accurately address the preferred packing of these materials simultaneously to single-molecule properties related to charge-transfer events, carefully employing dispersion-corrected density functional theory methods to accurately extract the key molecular parameters governing this phenomenon at the nanoscale. This study confirms the great deal of interest around these compounds, since controlled functionalization of model molecules (i.e., pentacene) allows to efficiently tune the corresponding charge mobilities, and the capacity of modern quantum-chemical methods to predict it after rationalizing the underlying structure-property relationships.     

Effect of solvation on ion binding to imidazole and methylimidazole

Quantum chemical [MP2(FULL)/6-311++G-(d,p)] calculations are done on the binding of hydrated Li(+), Na(+), K(+), Mg(2+), Cu(+), and Zn(2+) metal ions with biologically relevant heteroaromatics such as imidazole and methylimidazole. The computed interaction energies are found to be in good agreement with the available experimental data. The effect of hydration on hydrogen bonding has been studied in detail and it shows that the hydrogen bond strength between H(2)O···H-N(1) substantially increases in the presence of metal ions. The present study quantifies the cooperativity between M···imidazole (M = Li(+), Na(+), K(+), Mg(2+), Cu(+), and Zn(2+)) and N(1)-H···OH(2) interactions. Topological atoms in molecules (AIM) analysis and charge analysis support the variation in hydrogen-bonding strength and the variation in M···imidazole binding strength. Effect of hydration on N(1)-H stretching frequency is studied, and it shows a clear shift in the stretching frequency after sequential hydration of metal ion as well as the N(1) of imidazole. The present study provides a detailed account on the biologically important M-histidine motif interaction with metal ions, where histidine is modeled by imidazole and methylimidazole.     

Electron transport in silver-semiconductor nanocomposite films exhibiting multicolor photochromism

In the multicolor photochromism of TiO2 nanoporous films loaded with photocatalytically deposited Ag nanoparticles, visible light-induced electron transfer from Ag to oxygen molecules plays an essential role. Here we examined the effect of TiO2 on the electron transfer. We found that not only photocatalytically deposited Ag, but also electrodeposited Ag and commercially available Ag nanoparticles in a nanoporous TiO2 film exhibit the multicolor photochromism. The electrodeposited Ag exhibits the multicolor photochromism also in a nanoporous ZnO film, but not in nanoporous indium-tin oxide (ITO) and SiO2 matrices. Photoelectrochemical measurements for the Ag-TiO2 nanocomposite elucidated that some of the photo-excited electrons on Ag are transferred to oxygen molecules via TiO2 and non-excited Ag. Thus, an n-type semiconductor plays an important role in the charge separation between the excited electrons and Ag+. Non-excited Ag on TiO2 also plays an important role in the charge separation and/or catalysis of oxygen reduction. Replacement of the non-excited Ag with Pt accelerated the electron transport from the photo-excited Ag to oxygen molecules and the photochromic behavior.     

掺杂剂对聚乙炔中电荷密度波的影响

用CNDO／2方法研究了各种掺杂剂对聚乙炔中电荷密度波的影响，在掺杂剂附近的碳原子上出现较大的电荷密度，且p型比n型掺杂剂的影响更大，讨论了电荷波与导电性的关系。     

Effect of structural factors on the basicities and electronic spectra of betaine aldehydes of azoles and ylids of malonic ester and dimedone

Betaine aldehydes of thiazole and imidazole containing substituted pyridinium and isoquinolinium cations were synthesized and their basicities were determined. The effect of the type of charge separation (betaine and ylid) and the nature of the heteroatoms and substituents in the onium and anionoid parts of the molecules on their electronic spectra and basicities was studied; the principles established are presented in the form of linear dependences.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 2, pp. 246–251, February, 1990.     

Simulation of liquid imidazole using a high-rank quantum topological electrostatic potential

Rigid body molecular dynamics simulations were carried out on pure liquid imidazole at four different temperatures and at 1 atm. Imidazole, which is important both in life science and materials science, is one of the simplest molecules to possess both a lone pair and a π system. These two features are known to benefit from multipolar electrostatics. Here the electrostatic interaction is governed by atomic multipole moments obtained from topologically partitioned ab initio electron densities. The non-electrostatic terms are modeled with Lennard-Jones parameters adjusted to fit the experimental liquid density. All σ values are incrementally increased by one single scaling factor. We report on how the presence of multipolar electrostatics influences the local structure, dynamics and thermodynamics of the liquid compared to electrostatics by atomic point charges. The point charge force field exaggerates the number of π-stacked dimers in the liquid, and underestimates the number of hydrogen-bonded dimers. The effect of the temperature on the local structure of liquid imidazole was analysed using radial and spatial distribution functions.     

Charge transfer driven by electron correlation: a non-Dyson propagator approach

A hole charge created in a molecular system, for instance, by ionization, can migrate through the system solely driven by electron correlation. This charge transfer due to electron correlation is referred to as charge migration. We introduce in this work a new ab initio method analyzing charge migration due to electron correlation in molecules. This method, a third-order "non-Dyson" propagator approach, aims in the long run, in particular, at the calculation of charge migration in relatively large molecules such as oligopeptides. First results of the new non-Dyson method are compared with a previously used propagator approach.