Directed Self‐Assembly of DNA Tiles into Complex Nanocages

Tile‐based self‐assembly is a powerful method in DNA nanotechnology and has produced a wide range of well‐defined nanostructures. But the resulting structures are relatively simple. Increasing the structural complexity and the scope of the accessible structures is an outstanding challenge in molecular self‐assembly. A strategy to partially address this problem by introducing flexibility into assembling DNA tiles and employing directing agents to control the self‐assembly process is presented. To demonstrate this strategy, a range of DNA nanocages have been rationally designed and constructed. Many of them can not be assembled otherwise. All of the resulting structures have been thoroughly characterized by gel electrophoresis and cryogenic electron microscopy. This strategy greatly expands the scope of accessible DNA nanostructures and would facilitate technological applications such as nanoguest encapsulation, drug delivery, and nanoparticle organization.     

Programmed‐Assembly System Using DNA Jigsaw Pieces

A novel method for assembling multiple DNA origami structures has been developed by using designed 2D DNA origami rectangles, so‐called “DNA jigsaw pieces” that have sequence‐programmed connectors. Shape and sequence complementarity were introduced to the concavity and convex connectors in the DNA rectangles for selective connection with the help of nonselective π‐stacking interactions between the side edges of the DNA jigsaw piece structures. Single DNA jigsaw piece units were assembled into unidirectional nanostructures with the correct alignment and uniform orientation. Three and five different DNA jigsaw pieces were assembled into predesigned and ordered nanostructures in a programmed fashion. Finally, three‐, four‐, and five‐letter words have been displayed by using this programmed DNA jigsaw piece system.     

A Signal‐Passing DNA‐Strand‐Exchange Mechanism for Active Self‐Assembly of DNA Nanostructures

DNA nanostructured tiles play an active role in their own self‐assembly in the system described herein whereby they initiate a binding event that produces a cascading assembly process. We present DNA tiles that have a simple but powerful property: they respond to a binding event at one end of the tile by passing a signal across the tile to activate a binding site at the other end. This action allows sequential, virtually irreversible self‐assembly of tiles and enables local communication during the self‐assembly process. This localized signal‐passing mechanism provides a new element of control for autonomous self‐assembly of DNA nanostructures.     

AFM Study of the Self‐Assembly Behavior of Hexa‐Armed Star Polymers with a Discotic Triphenylene Core

The six‐armed polystyrenes and poly(methyl methacrylate)s with a triphenylene core showed different self‐assembling patterns, isolated cylinders for polySt on mica and highly ordered cylindrical pores for polyMMA on a silicon wafer. With a decrease of polymer concentration in tetrahydrofuran (THF), the size and height of cylinders decreased for polySt, but for polyMMA, the size and depth of the cylindrical pores increased. Slow evaporation of the solvent and a low molecular weight favored the formation of regular patterns.

AFM images of self‐assembling patterns of polySt 1a on mica (A) and of polyMMA 2a on silicon wafer (B).     

Flow‐Enabled Self‐Assembly of Large‐Scale Aligned Nanowires

One‐dimensional nanowires enable the realization of optical and electronic nanodevices that may find applications in energy conversion and storage systems. Herein, large‐scale aligned DNA nanowires were crafted by flow‐enabled self‐assembly (FESA). The highly oriented and continuous DNA nanowires were then capitalized on either as a template to form metallic nanowires by exposing DNA nanowires that had been preloaded with metal salts to an oxygen plasma or as a scaffold to direct the positioning and alignment of metal nanoparticles and nanorods. The FESA strategy is simple and easy to implement and thus a promising new method for the low‐cost synthesis of large‐scale one‐dimensional nanostructures for nanodevices.     

Proton‐Coupled Self‐Assembly of a Porphyrin‐Naphthalenediimide Dyad

The construction of an n–p heterojunction through the self‐assembly of a dyad based on tetraphenylporphyrin (TPP) and 1,4,5,8‐naphthalenedimide (NDI) ( 1 ) is described. Proton transfer from the lysine head group of 1 to the porphyrin ring occurs concomitantly with self‐assembly into 1D nanorods in CHCl₃. TEM and AFM studies showed that the nanorods are formed by the lateral and vertical fusion of multilameller vesicles into networks and hollow ribbons, respectively. These intermediate structures transitioned to nanorods over the course of 4–6 days. Time‐resolved spectroscopy revealed that photoinduced charge separation occurs with rate constants that depend on the nature of the aggregation.     

DNA‐Grafted Supramolecular Polymers: Helical Ribbon Structures Formed by Self‐Assembly of Pyrene–DNA Chimeric Oligomers

The controlled arraying of DNA strands on adaptive polymeric platforms remains a challenge. Here, the noncovalent synthesis of DNA‐grafted supramolecular polymers from short chimeric oligomers is presented. The oligomers are composed of an oligopyrenotide strand attached to the 5′‐end of an oligodeoxynucleotide. The supramolecular polymerization of these oligomers in an aqueous medium leads to the formation of one‐dimensional (1D) helical ribbon structures. Atomic force and transmission electron microscopy show rod‐like polymers of several hundred nanometers in length. DNA‐grafted polymers of the type described herein will serve as models for the development of structurally and functionally diverse supramolecular platforms with applications in materials science and diagnostics.     

Supramolecular Self‐Assembly of Polymer‐Functionalized Carbon Nanotubes on Surfaces

Summary: Supramolecular self‐assembly of poly(methyl methacrylate)‐grafted multiwalled carbon nanotubes (MWNT‐g‐PMMA) was reported herein. The MWNT‐g‐PMMA (85 wt.‐% PMMA) dispersed in tetrahydrofuran could self‐assemble into suprastructures on surfaces such as gold, mica, silicon, quartz, or carbon films. With decreasing concentration of the MWNT‐g‐PMMA from 3 to 0.1 mg · mL⁻¹, the assembled structures changed from cellular and basketwork‐like forms to multilayer cellular networks and individual needles. SEM, AFM, and TEM measurements confirmed the morphology of the assembled suprastructures, and revealed the assembly mechanism. Phase separation during evaporation of the solvent drives the MWNT‐g‐PMMA nanohybrids to assemble and form the suprastructures, and the rigid MWNTs stabilize the structures.

SEM images of self‐assembled suprastructures of basketwork (a), cellular network (b), and needles (c) from the THF solution of the PMMA‐grafted MWNTs on gold surface.     

Supramolecular Nanoscaled Self‐Assembly of Bifunctional Cyclodextrin and Trifunctional Melamine Precursors

A new type of guest–core supramolecular networks via inclusion complexation of nanoscaled building blocks such as bifunctional cyclodextrin (CD) derivatives and trifunctional melamine derivatives were prepared. By using AFM and an adoption of the cryo‐TEM technique under high acceleration voltage the nanoscale supramolecular network structure, nexus units, and CD molecules could be visualized. In addition to the 2‐D ¹H NMR rotating frame Overhauser effect spectroscopy (ROESY) experiments, theoretical studies on the molecular docking of the CDs and the melamine derivative have been conducted to elucidate the thermodynamic properties by the two‐layered integrated molecular orbital and molecular mechanics (ONIOM) method, which combines both quantum mechanics and molecular mechanics (QM/MM) calculations.

     

Complexing DNA Origami Frameworks through Sequential Self‐Assembly Based on Directed Docking

Ordered DNA origami arrays have the potential to compartmentalize space into distinct periodic domains that can incorporate a variety of nanoscale objects. Herein, we used the cavities of a preassembled 2D DNA origami framework to incorporate square‐shaped DNA origami structures (SQ‐origamis). The framework was self‐assembled on a lipid bilayer membrane from cross‐shaped DNA origami structures (CR‐origamis) and subsequently exposed to the SQ‐origamis. High‐speed AFM revealed the dynamic adsorption/desorption behavior of the SQ‐origamis, which resulted in continuous changing of their arrangements in the framework. These dynamic SQ‐origamis were trapped in the cavities by increasing the Mg²⁺ concentration or by introducing sticky‐ended cohesions between extended staples, both from the SQ‐ and CR‐origamis, which enabled the directed docking of the SQ‐origamis. Our study offers a platform to create supramolecular structures or systems consisting of multiple DNA origami components.     

Self‐Assembly of a Mononuclear [FeIII(L)(EtOH)2] Complex Bearing an n‐Dodecyl Chain on Solid Highly Oriented Pyrolytic Graphite Surfaces

The synthesis and structures of the N‐[(2‐hydroxy‐3‐methyl‐5‐dodecylphenyl)methyl]‐N‐(carboxymethyl)glycine disodium salt (H L ) ligand and its neutral mononuclear complex [Fe^III( L )(EtOH)₂] ( 1 ) are reported. Structural and electronic properties of 1 were investigated by using scanning tunneling microscopy (STM) and current imaging tunneling spectroscopy (CITS) techniques. These studies reveal that molecules of 1 form well‐ordered self‐assemblies when deposited on a highly oriented pyrolytic graphite (HOPG) surface. At low concentrations, single or double chains (i.e., nanowires) of the complex were observed, whereas at high concentration the complex forms crystals and densely packed one‐dimensional structures. In STM topographies, the dimensions of assemblies of 1 found on the surface are consistent with dimensions obtained from X‐ray crystallography, which indicates the strong similarities between the crystal form and surface assembled states. Double chains are attributed to hydrogen‐bonding interactions and the molecules align preferentially along graphite defects. In the CITS image of complex 1 a strong tunneling current contrast at the positions of the metal ions was observed. These data were interpreted and reveal that the bonds coordinating the metal ions are weaker than those of the surrounding ligands; therefore the energy levels next to the Fermi energy of the molecule should be dominated by metal‐ion orbitals.