电喷雾电离质谱测定细胞色素b5及其定点突变蛋白

本文利用电喷雾电离质谱技术对胰蛋白酶酶解的细胞色素b5蛋白Tb5及脂肪酶酶解的细胞色素b5蛋白Lb5及它们的定点突变蛋白共八个样品的分子量进行精确测定, 证实定点突变的试验是成功的。     

表面带负电荷氨基酸残基的突变对细胞色素b5与细胞色素c结合和识别的影响

利用核磁共振方法研究表面带不同负电荷氨基酸残基突变后的细胞色素b₅与细胞色素c的结合与识别.结果表明,静电作用在细胞色素b₅与细胞色素c的结合过程中有着重要的贡献,而且这些静电贡献在一定程度上具有累加性,E48的贡献略大于E44.同时还证明Browniandynamicssimulations优化出的Glu48-Lys13,Glu56-Lys₈₇,Asp60-Lys86和heme6-propionate-Tml₇₂(细胞色素b₅的残基排在前面)的结合方式在溶液中的确存在.细胞色素b₅突变体(E48,E56/A,D60/A)及[Cr(oxalate)₃]^3-对细胞色素c的表面结合竞争实验表明,细胞色素c表面结合区Site仍然同细胞色素b₅突变体(E48,E56/A,D60/A)有结合作用,只是结合强度上相对于野生细胞色素b₅同细胞色素c的结合有所降低.这表明除上述的Brownian dynamics simulations模型外,尚有其它如Salemme模型等的结合方式,这也揭示出细胞色素b₅和细胞色素c之间的结合是比较动态的.     

细胞色素b5突变体(E44A/E48A/E56A/D60A)的溶液结构研究

电子传递反应是光合作用和生物氧化等一系列重要生物过程的基本反应[1],为阐明细胞色素b5和c的静电结合模型,1993年Northrup等[3]用Brownian动态模拟预言的这两个蛋白结合模型有两种几何形态,根据以下模型设计了许多实验,但对两种模型都至关重要的细胞色素b5血红素暴霞棱周围的4个残基E44,48,56T D60对蛋白质复合物的稳定性以及在蛋白质识别中的作用仍然不清楚,为了阐明这4个带负电的残基对细胞色素b5结构的影响,正确地揭示蛋白质相互作用的本质和机理,本文对牛肝微粒体细胞色素b5胰蛋白酶切割后水溶性部分的突变体(E44A/E48A/E56A/D60A)深液结构进行了研究.     

细胞色素b5突变体V45H NMR初步研究

通过分析在H2O和D2O中采集,DQF-COSY,TOCSY和NOESY等二维核磁共振波谱鉴定了细胞色素b5定点突变体V45H(残基Val^45突变为His^45)的大多数氨基酸残基的质子自旋系统,通过解析NOESY谱中的dNN(i,i+1),dαN(i,i+1),dαN(i,i+2),dαN(i,i+3),dαβ(i,i+3)和dβN(i,i+1)等NOE相关,完成了其序列特异性归属以及主链和侧链质子共振信号的全归属。突变体V45H的二级结构分析表明残基Val^45突变为His^45对分子的整体折叠影响不大。但是,与野生型细胞色素b5相比较,突变体V45H主链酰胺质子的化学位移指数提示突变使其血红素疏水腔的微环境受到扰动。以上实验结果为进一步测定V45H的溶液结构和分析残基Val^45在蛋白质中的作用提供了基础。     

表面带负电荷氨基酸残基的突变对细胞色素bs与细胞色素c结合和识别的影响

利用核磁共振方法研究表面带不同负电荷氨基酸残基突变后的细胞色素b5与细胞色素c的结合与识别，结果表明，静电作用在细胞色素b5与细胞色素c的结合过程中有着重要的贡献，而且这些静电贡献在一定程度上具有 加性，E48的贡献略大于E44。同时还证明Brownian dyanmics simulations优化出的Glu48-Lys13,Clu56-Lys87,Asp60-Lys86和heme 6-propionate-Tml72（细胞色素b5的残基排在前面）的结合方式在溶液中的确存在，细胞色素b5突变体9E48，E56／A，D60／A）及[Cr(oxalate)3]^3－对细胞色素c的表面竞争实验表明，细胞色素c表面结合区SiteⅢ仍然同细胞色素b5突变体9E48，E56／A，D60／A）有结合作用，只是结合强度上相对于野生细胞色素b5同细胞色素c的结合有所降低，这表明除上述的Browni-an dynamics simulations模型外，尚有其它如Salemme模型等的结合方式，这也揭示出细胞色素b5和细胞色素c之间的结合是比较动态的。     

细胞色素b5-蛋白质相互作用研究

蛋白质-蛋白质相互作用在生命过程中发挥至关重要的作用,特别是血红素类蛋白。细胞色素b5(Cyt b5)是血红素蛋白的一个典型代表,在生物体内通过多种蛋白质-蛋白质相互作用来执行其生物功能。目前所揭示的与Cyt b5相关的蛋白质相互作用包括:细胞色素b5-细胞色素b5还原酶,细胞色素b5-细胞色素P450,细胞色素b5-细胞色素c,细胞色素b5-肌红蛋白或血红蛋白,细胞色素b5-融合蛋白(谷胱甘肽S-转移酶GST和绿色荧光蛋白GFP)和细胞色素b5-转运蛋白(蔗糖转运蛋白SUT1和山梨醇转运蛋白SOT6)等。同一蛋白能与众多不同蛋白相互作用的事实,使我们认识到某些特定蛋白的生物学重要性。另一方面,研究同一蛋白与不同蛋白质间的相互作用将会进一步加深我们对蛋白质结构与功能关系的理解,以及指导新颖蛋白的理性设计与最终应用。     

细胞色素b5突变体P40V血红素微环境核磁共振研究

细胞色素b5是一个具有多种重要生理功能的低自旋金属蛋白, 作为呼吸链系统的主要电子传递体之一受到了广泛的重视. 为了研究细胞色素b5表面疏水斑区Pro⁴⁰在细胞色素b5结构与功能上的重要性, 本文利用定点突变技术把细胞色素b5中Pro⁴⁰突变为Val⁴⁰, 并采用1D与2D ¹H NMR的方法对其进行分析, 探讨了Pro⁴⁰突变为Val⁴⁰对细胞色素b5血红素微环境的影响.     

细胞色素c突变研究进展

在简述细胞色素c的生物功能和结构特征的基础上,综述了细胞色素c突变研究的进展,重点论述了对血红素辅基(heme)的轴向配体Met80、heme所在腔的保守氨基酸残基Tyr67以及蛋白表面的保守氨基酸残基Phe82的突变研究,并对一些突变体蛋白表现出来的特殊性质给予解释。     

细胞色素b5蛋白的提取和纯化——推荐一个综合化学教学实验

介绍一个关于蛋白质提取、纯化及其性质研究的教学实验内容,讨论了该实验在本科生化学实验教学中的意义和实践效果。     

Influences of the Hydrophobicity of the Heme－binding Pocket on the Properties and Functions of Cytochrome b5 Mutants

The mutation sites of the four mutants F35Y, P40V, V45E and V45Y of cytochrome b5 are located at the edge of the heme-binding pocket. The solvent accessible areas of the “pocket inte-rior“ of the four mutants and the wild-type cytochrome b5 have been calculated based on their crystal structures at high resolu-tion. The change in the hydrophobicity of the heme-binding pocket resulting from the mutation can be quantitatively de-scribed using the difference of the solvent accessible area of the “pocket interior“ of each mutant from that of the wild-type cy-tochrome b5. The influences of the hydrophobicity of the heme-binding pocket on the protein stability and redox potential are discussed.     

Structures of Cytochrome b_5 Mutated at the Charged Surface-Residues and Their Interactions with Cytochrome c

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W544F定点突变提高苏云金杆菌Cry1Ac蛋白的稳定性

W544是Cry1Ac蛋白上独特于其它Cry类蛋白的一个氨基酸, 它与F578和F604一起组成一个“螺旋桨状”的疏水簇, 通过疏水相互作用维持蛋白的三维结构稳定. 本研究通过定点突变将W544保守地替换为苯丙氨酸, SDS-PAGE分析结果表明其纯化的原毒素对紫外照射、胰蛋白酶处理和室温存贮的稳定性相对于野生Cry1Ac都有一定程度的提高; 经原子力显微镜观察, 发现W544F产生的晶体两个顶点间的垂直距离比野生型Cry1Ac约长0.6 μm, 且晶体表面不及野生型光滑; 此外, W544F与野生Cry1Ac的杀虫活性相似, 但经过紫外光照射9 h后, 其保留的杀虫活性比野生型高4倍以上. W544F突变较好地解决了Cry1Ac毒素蛋白田间应用不持久的问题, 具有重要的应用价值.     

Proline-40 is Essential to Maintaining Cytochrome b_5''''s Stability and Its Electron Transfer with Cytochrome c

ＩｎｔｒｏｄｕｃｔｉｏｎＣｙｔｏｃｈｒｏｍｅｂ5(Ｃｙｔｂ5)ｉｓａｍｅｍｂｒａｎｅ ｂｏｕｎｄｐｒｏ ｔｅｉｎ .Ｉｔｃａｎｂｅｐｒｏｔｅｏｌｙｚｅｄｔｏｙｉｅｌｄａｓｏｌｕｂｌｅ ,ｈｙｄｒｏｐｈｉｌｉｃｄｏｍａｉｎｃｏｎｔａｉｎｉｎｇａｎｏｎ ｃｏｖａｌｅｎｔｌｙｂｏｕｎｄｈｅｍｅｇｒｏｕｐ .Ｃｙｔｂ5ｉｓｉｎｖｏｌｖｅｄｉｎｅｌｅｃｔｒｏｎｔｒａｎｓｆｅｒｗｉｔｈａｖａｒｉｅｔｙｏｆｐｒｏｔｅｉｎｓ,ｓｕｃｈａｓｃｙｔｏｃｈｒｏｍｅｃ (Ｃｙｔｃ) ,1 3 ｍｅｔｍｙｏ ｇｌｏｂｉｎ ,2 ｍｅｔｈｅｍｏｇｌｏ…     

Electronic and Functional Structure of Copper in Plant Cu/Zn Superoxide Dismutase with Combined Site-directed Mutagenesis and Electron Paramagnetic Resonance

Arabidopsis thaliana copper-zinc superoxide dismutase 1 (AtSOD1) is a typical metalloenzyme conferring cellular protection against the excessive accumulation of toxic reactive oxygen species, and is therefore considered as a critical protein. However, the structure and function of the vital amino acids around the active site of AtSOD1 remain poorly understood. Herein, the coordinated geometry of the catalytic center in AtSOD1 was reconstructed by electron paramagnetic resonance (EPR) technique, and it was found to be composed of copper and four histidine (H) residues using site-directed mutagenesis. Analysis of the mutants showed that H45 and H62 play essential roles in the catalytic reaction, and H119 plays an accessary role in facilitating substrate or proton transfer. The results indicated that the redox change of the Cu ion and the overall enzymatic activity of the protein were sustained by the H45-Cu-H62 core structure. In contrast, the residue H47 showed nearly no effect on the SOD catalytic activity. These data should contribute to a deeper understanding of the catalytic mechanism of the enzyme, and provide a new approach for the effective molecular modification of copper/zinc SODs to facilitate further research in this field.     

Influences of the Hydrophobicity of the Heme-binding Pocket on the Properties and Functions of Cytochrome b_5 Mutants

IntroductionElectrontransferreactionsarethekeystepsinphoto synthesis ,respirationandmanyotherbiochemicalprocess es.1Cytochromeb5isaredoxproteinexistingwidelyinnature ,whichactsasanelectron carrierduringvariouselectrontransferprocessesinthebiologicalsystem .2Cytochromeb5isamembraneproteinwithmolecularweightofapproximately 16kDa ,ofwhichthehydrophobicC terminaldomainanchorscytochromeb5tothemem brane ,andthehydrophilicN terminaldomaincontainshemeprostheticgroupandexhibitsthebiologicalfunctionsof…     

Correlations Between Amino Acids at Different Sites in Local Sequences of Protein Fragments with Given Structural Patterns

Ample evidence suggests that the local structures of peptide fragments in native proteins are to some extent encoded by their local sequences. Detecting such local correlations is important but it is still an open question what would be the most appropriate method. This is partly because conventional sequence analyses treat amino acid preferences at each site of a protein sequence independently, while it is often the inter-site interactions that bring about local sequence-structure correlations. Here a new scheme is introduced to capture the correlation between amino acid preferences at different sites for different local structure types. A library of nine-residue fragments is constructed, and the fragments are divided into clusters based on their local structures. For each local structure cluster or type, chi-square tests are used to identify correlated preferences of amino acid combinations at pairs of sites. A score function is constructed including both the single site amino acid preferences and the dual-site amino acid combination preferences, which can be used to identify whether a sequence fragment would have a strong tendency to form a particular local structure in native proteins. The results show that, given a local structure pattern, dual-site amino acid combinations contain different information from single site amino acid preferences. Representative examples show that many of the statistically identified correlations agree with previously-proposed heuristic rules about local sequence-structure correlations, or are consistent with physical-chemical interactions required to stabilize particular local structures. Results also show that such dual-site correlations in the score function significantly improves the Z-score matching a sequence fragment to its native local structure relative to nonnative local structures, and certain local structure types are highly predictable from the local sequence alone if inter-site correlations are considered.     

细胞色素C在糖及醇修饰金电极上的直接电化学

细胞色素C在生物体内能进行可逆的氧化还原反应，但它知不能直接在金属电极上进行可逆的电化学反应．因此在早期细胞色素（：的电化学研究中，人们往往借助干一类称为媒介体山的分子，这给细胞色素C的电化学反应研究带来很大的不便．IO77年，hill等人间发现在4／一联毗陡存在下     

两种ZSM-5沸石的晶体结构及其与吸附、扩散和反应性能的关系

用x-射线粉末衍射法研究了两种ZSM-5沸石的晶体结构。两者同属Pnma空间群,晶胞参数分别为:5001—a=20.118(?),b=19.923(?),c=13.410(?);5020—a=20.048(?),b=19.884(?),c=13.352(?)。两者基本结构形貌相近,但与5001相比,5020的骨架结构内存在更大的“应力”,因而较易遭到破坏,两种样品的孔道开口直径分别为:5001-正弦形通道5.080—5.650(?),平均5.367(?),直通道5.207—5.390(?),平均5.307(?);5020—正弦形通道5.111—5.655(?),平均5.368(?),直通道4.993—5.404(?),平均5.226(?)。两者正弦形通道开口尺寸和形状十分接近,而直通道开口尺寸和形状有一定差异,这种孔道结构上的差异是二者性能差别的一个不可忽视的原因。     

A Mechanistic Understanding of the Distinct Regio- and Chemoselectivity of Multifunctional P450s by Structural Comparison of IkaD and CftA Complexed with Common Substrates

Regio- and chemoselective C−H activation at multi-positions of a single molecule is fascinating but chemically challenging. The homologous cytochrome P450 enzymes IkaD and CftA catalyze multiple C−H oxidations on the same polycyclic tetramate macrolactam (PoTeM) ikarugamycin, with distinct regio- and chemoselectivity. Herein we provide mechanistic understanding of their functional differences by solving crystal structures of IkaD and CftA in complex with ikarugamycin and unnatural substrates. Distinct conformations of the F/G region in IkaD and CftA are found to differentiate the orientation of PoTeM substrates, by causing different binding patterns with polar moieties to determine site selection, oxidation order, and chemoselectivity. Fine-tuning the polar subpocket altered the regioselectivity of IkaD, indicating that substrate re-orientation by mutating residues distal to the oxidation site could serve as an important method in future engineering of P450 enzymes.