Dissociation and multiple ionization energies for five polycyclic aromatic hydrocarbon molecules

We have performed density functional theory calculations for a range of neutral, singly, and multiply charged polycyclic aromatic hydrocarbons (PAHs), and their fragmentation products for H-, H(+)-, C(2)H(2)-, and C(2)H(2)(+)-emissions. The adiabatic and vertical ionization energies follow linear dependencies as functions of charge state for all five intact PAHs (naphthalene, biphenylene, anthracene, pyrene, and coronene). First estimates of the total ionization and fragmentation cross sections in ion-PAH collisions display markedly different size dependencies for pericondensed and catacondensed PAH species, reflecting differences in their first ionization energies. The dissociation energies show that the PAH(q+)-molecules are thermodynamically stable for q ≤?2 (naphthalene, biphenylene, and anthracene), q?≤?3 (pyrene), and q?≤?4 (coronene). PAHs in charge states above these limits may also survive experimental time scales due to the presence of reaction barriers as deduced from explorations of the potential energy surface regions for H(+)-emissions from all five PAHs and for C(2)H(2)(+)-emission from naphthalene--the smallest PAH.     

Unimolecular dissociation of protonated trans-1,4-diphenyl-2-butene-1,4-dione in the gas phase: rearrangement versus simple cleavage

Fragmentation mechanisms of trans-1,4-diphenyl-2-butene-1,4-dione were studied using a variety of mass spectrometric techniques. The major fragmentation pathways occur by various rearrangements by loss of H(2)O, CO, H(2)O and CO, and CO(2). The other fragmentation pathways via simple alpha cleavages were also observed but accounted for the minor dissociation channels in both a two-dimensional (2-D) linear ion trap and a quadrupole time-of-flight (Q-TOF) mass spectrometer. The elimination of CO(2) (rather than CH(3)CHO or C(3)H(8)), which was confirmed by an exact mass measurement using the Q-TOF instrument, represented a major fragmentation pathway in the 2-D linear ion trap mass spectrometer. However, the elimination of H(2)O and CO becomes more competitive in the beam-type Q-TOF instrument. The loss of CO is observed in both the MS(2) experiment of m/z 237 and the MS(3) experiment of m/z 219 but via the different transition states. The data suggest that the olefinic double bond in protonated trans-1,4-diphenyl-2-butene-1,4-dione plays a key role in stabilizing the rearrangement transition states and increasing the bond dissociation (cleavage) energy to give favorable rearrangement fragmentation pathways.     

Structure of cationized arginine (arg.m, m = h, li, na, k, rb, and cs) in the gas phase: further evidence for zwitterionic arginine

The gas-phase structures of cationized arginine, Arg.M(+), M = Li, Na, K, Rb, and Cs, were studied both by hybrid method density functional theory calculations and experimentally using low-energy collisionally activated and thermal radiative dissociation. Calculations at the B3LYP/LACVP++** level of theory show that the salt-bridge structures in which the arginine is a zwitterion (protonated side chain, deprotonated C-terminus) become more stable than the charge-solvated structures with increasing metal ion size. The difference in energy between the most stable charge-solvated structure and salt-bridge structure of Arg.M(+) increases from -0.7 kcal/mol for Arg.Li(+) to +3.3 kcal/mol for Arg.Cs(+). The stabilities of the salt-bridge and charge-solvated structures reverse between M = Li and Na. These calculations are in good agreement with the results of dissociation experiments. The low-energy dissociation pathways depend on the cation size. Arginine complexed with small cations (Li and Na) loses H(2)O, while arginine complexed with larger cations (K, Rb, and Cs) loses NH(3). Loss of H(2)O must come from a charge-solvated ion, whereas the loss of NH(3) can come from the protonated side chain of a salt-bridge structure. The results of dissociation experiments using several cationized arginine derivatives are consistent with the existence of these two distinct structures. In particular, arginine methyl esters, which cannot form salt bridges, dissociate by loss of methanol, analogous to loss of H(2)O from Arg.M(+); no loss of NH(3) is observed. Although dissociation experiments probe gas-phase structure indirectly, the observed fragmentation pathways are in good agreement with the calculated lowest energy isomers. The combination of the results from experiment and theory provides strong evidence that the structure of arginine-alkali metal ion complexes in the gas phase changes from a charge-solvated structure to a salt-bridge structure as the size of the metal ion increases.     

Competitive benzyl cation transfer and proton transfer: collision‐induced mass spectrometric fragmentation of protonated N,N‐dibenzylaniline

Collision‐induced dissociation of protonated N ,N ‐dibenzylaniline was investigated by electrospray tandem mass spectrometry. Various fragmentation pathways were dominated by benzyl cation and proton transfer. Benzyl cation transfers from the initial site (nitrogen) to benzylic phenyl or aniline phenyl ring. The benzyl cations transfer to the two different sites, and both result in the benzene loss combined with 1,3‐H shift. In addition, after the benzyl cation transfers to the benzylic phenyl ring, 1,2‐H shift and 1,4‐H shift proceed competitively to trigger the diphenylmethane loss and aniline loss, respectively. Deuterium labeling experiments, substituent labeling experiments and density functional theory calculations were performed to support the proposed benzyl cation and proton transfer mechanism. Overall, this study enriches the knowledge of fragmentation mechanisms of protonated N ‐benzyl compounds. Copyright © 2017 John Wiley & Sons, Ltd.     

Formation of C4H4(•+) from the pyridine radical cation: a theoretical mechanistic and kinetic study

The potential energy surface (PES) for the formation of C(4)H(4)(?+) from the pyridine radical cation by loss of HCN was determined from quantum chemical calculations using the G3//B3LYP method. The complete reaction pathways for the formation of the low-energy C(4)H(4)(?+) isomers, radical cations of methylenecyclopropene (MCP(?+)), vinylacteylene (VA(?+)), cyclobutadiene, and butatriene were obtained. Based on the PESs, a Rice-Ramsperger-Kassel-Marcus model calculation was performed to investigate the dissociation kinetics. The calculated dissociation rate constants agreed with the previous experimental data. It was predicted that a mixture of MCP(?+) and VA(?+) was formed by loss of HCN. The formation of MCP(?+) was more favored near the dissociation threshold and at high energies, whereas the formation of VA(?+) was more favored at the low energies corresponding to the ion lifetime of microseconds.     

Fragmentation of singly charged adenine induced by neutral fluorine beam impact at 3 keV

The fragmentation scheme of singly charged adenine molecule (H(5)C(5)N(5)(+)) has been studied via neutral fluorine impact at 3 keV. By analyzing in correlation the kinetic energy loss of the scattered projectile F(-) produced in single charge transfer process and the mass of the charged fragments, the excitation energy distribution of the parent adenine molecular ions has been determined for each of the main dissociation channels. Several fragmentation pathways unrevealed in standard mass spectra or in appearance energy measurements are investigated. Regarding the well-known hydrogen cyanide (HCN) loss sequence, we demonstrate that although the loss of a HCN is the dominant decay channel for the parent H(5)C(5)N(5)(+) (m = 135), the decay of the first daughter ion H(4)C(4)N(4)(+) (m = 108) involves not only the HNC (m = 27) loss but also the symmetric breakdown into two dimers of HCN.     

Collisions of slow polyatomic ions with surfaces: dissociation and chemical reactions of C2H2+*, C2H3+, C2H4+*, C2H5+, and their deuterated variants C2D2+* and C2D4+* on room-temperature and heated carbon surfaces

Interaction of C2Hn+ (n = 2-5) hydrocarbon ions and some of their isotopic variants with room-temperature and heated (600 degrees C) highly oriented pyrolytic graphite (HOPG) surfaces was investigated over the range of incident energies 11-46 eV and an incident angle of 60 degrees with respect to the surface normal. The work is an extension of our earlier research on surface interactions of CHn+ (n = 3-5) ions. Mass spectra, translational energy distributions, and angular distributions of product ions were measured. Collisions with the HOPG surface heated to 600 degrees C showed only partial or substantial dissociation of the projectile ions; translational energy distributions of the product ions peaked at about 50% of the incident energy. Interactions with the HOPG surface at room temperature showed both surface-induced dissociation of the projectiles and, in the case of radical cation projectiles C2H2+* and C2H4+*, chemical reactions with the hydrocarbons on the surface. These reactions were (i) H-atom transfer to the projectile, formation of protonated projectiles, and their subsequent fragmentation and (ii) formation of a carbon chain build-up product in reactions of the projectile ion with a terminal CH3-group of the surface hydrocarbons and subsequent fragmentation of the product ion to C3H3+. The product ions were formed in inelastic collisions in which the translational energy of the surface-excited projectile peaked at about 32% of the incident energy. Angular distributions of reaction products showed peaking at subspecular angles close to 68 degrees (heated surfaces) and 72 degrees (room-temperature surfaces). The absolute survival probability at the incident angle of 60 degrees was about 0.1% for C2H2+*, close to 1% for C2H4+* and C2H5+, and about 3-6% for C2H3+.     

Trends in the reactions of gaseous phenyl pnictogen radical cations C6H5EH2*+ (E = N, P, As)

In context of an analysis of the effect of the central atom E of gaseous radical cations of phenyl pnictogens C(6)H(5)EH(2), E = N (1), P (2), and As (3), the mass spectrometric reactions of phenyl phosphane 2 have been re-investigated by D-labeling and by using methods of tandem mass spectrometry. The 70 eV mass spectrum of 2 shows the base peak for ion [M-2H](*+) and significant peaks for ions [M-H](+), [M-(2C,3H)](+), [M-PH] (*+), and [M-(C,P,2H)](+). Metastable 2(*+) fragments exclusively by loss of H(2), and the investigation of deuterated 2-d(2) shows that excessive H/D migrations occur before fragmentation. Other significant fragment ions in the mass spectrum of 2 arise by losses of C(2)H(2,) P, or HCP from the ion [M-H](+). This mass spectrometric behavior puts the radical cation 2(*+) in between the fragmentation reactions of aniline radical cation 1(*+) (loss of H and subsequent losses of C(2)H(2,) or HCN) and phenyl arsane radical cation 3(*+) (elimination of H(2) and loss of As from ion [M-H](+)). The fragmentation mechanisms of the radical cations 1(*+) -3(*+) and of related ions were analyzed by calculations of the enthalpy of relevant species at the stationary points of the minimum enthalpy reaction pathways using the DFT hybrid functionals UBHLYP/6-311+G(2d,p)//UBHLYP/6-311+G(d). The results show that, in contrast to ionized aniline 1(*+), the reactions of the derivatives 2(*+) and 3(*+) of the heavier main group elements P and As are characterized by an easy elimination of H(2)via a reductive elimination of group C(6)H(5)-E (E = P, As) and by a special stability of bicyclic isomers of 2(*+) and 3(*+). Thus, while 1(*+) rearranges by ring expansion and formation an 7-aza-tropylium cation by loss of H., the increased stability of bicyclic intermediates in the rearrangement of 2(*+) and in particular of 3(*+) results in separate rearrangement pathways. The origin of these effects is the more extended and diffuse nature of the 3p and 4p AO of P and As.     

Collision induced dissociation of doubly-charged ions: Coulomb explosion vs. neutral loss in [Ca(urea)](2+) gas phase unimolecular reactivity via chemical dynamics simulations

In this paper we report different theoretical approaches to study the gas-phase unimolecular dissociation of the doubly-charged cation [Ca(urea)](2+), in order to rationalize recent experimental findings. Quantum mechanical plus molecular mechanical (QM/MM) direct chemical dynamics simulations were used to investigate collision induced dissociation (CID) and rotational-vibrational energy transfer for Ar + [Ca(urea)](2+) collisions. For the picosecond time-domain of the simulations, both neutral loss and Coulomb explosion reactions were found and the differences in their mechanisms elucidated. The loss of neutral urea subsequent to collision with Ar occurs via a shattering mechanism, while the formation of two singly-charged cations follows statistical (or almost statistical) dynamics. Vibrational-rotational energy transfer efficiencies obtained for trajectories that do not dissociate during the trajectory integration were used in conjunction with RRKM rate constants to approximate dissociation pathways assuming complete intramolecular vibrational energy redistribution (IVR) and statistical dynamics. This statistical limit predicts, as expected, that at long time the most stable species on the potential energy surface (PES) dominate. These results, coupled with experimental CID from which both neutral loss and Coulomb explosion products were obtained, show that the gas phase dissociation of this ion occurs by multiple mechanisms leading to different products and that reactivity on the complicated PES is dynamically complex.     

Simulating electron transfer attachment to a positively charged model peptide

Ab initio electronic structure methods, including stabilization method tools for handling electronically metastable states, are used to treat a model system designed to probe the electron-transfer event characterizing electron-transfer dissociation (ETD) mass spectroscopic studies of peptides. The model system consists of a cation H(3)C-(C=O)NH-CH(2)-CH(2)-NH(3)(+), containing a protonated amine site and an amide site, that undergoes collisions with a CH(3)(-) anion. Cross-sections for electron transfer from CH(3)(-) to the protonated amine site are shown to exceed those for transfer to the Coulomb-stabilized amide site by 2 orders of magnitude. Moreover, it is shown that the fates of the amine-attached and amide-attached species are similar in that both eventually lead to the same carbon-centered radical species H(3)C-((*)C-OH)NH-CH(2)-CH(2)-NH(2), although the reaction pathways by which the two species produce this radical are somewhat different. The implications for understanding peptide fragmentation patterns under ETD conditions are also discussed in light of this work's findings.     

Gas-phase fragmentation of long-lived cysteine radical cations formed via no loss from protonated S-nitrosocysteine

In this work, we describe two different methods for generating protonated S-nitrosocysteine in the gas phase. The first method involves a gas-phase reaction of protonated cysteine with t-butylnitrite, while the second method uses a solution-based transnitrosylation reaction of cysteine with S-nitrosoglutathione followed by transfer of the resulting S-nitrosocysteine into the gas phase by electrospray ionization mass spectrometry (ESI-MS). Independent of the way it was formed, protonated S-nitrosocysteine readily fragments via bond homolysis to form a long-lived radical cation of cysteine (Cys^•+), which fragments under collision-induced dissociation (CID) conditions via losses in the following relative abundance order: •COOH ≫ CH₂S > •CH₂SH-H₂S. Deuterium labeling experiments were performed to study the mechanisms leading to these pathways. DFT calculations were also used to probe aspects of the fragmentation of protonated S-nitrosocysteine and the radical cation of cysteine. NO loss is found to be the lowest energy channel for the former ion, while the initially formed distonic Cys^•+ with a sulfur radical site undergoes proton and/or H atom transfer reactions that precede the losses of CH₂S, •COOH, •CH₂SH, and H₂S.     

Modeling of the gas-phase ion chemistry of protonated arginine

Arginine is often involved at the C-terminus of peptides obtained from tryptic digests of proteins. The very basic guanidine group of the side-chain of arginine has a large effect on the backbone fragmentation of protonated peptides. Furthermore, arginine exhibits specific fragmentation reactions involving its side-chain. Various tautomerization states, conformers and side-chain dissociation channels of protonated arginine were studied using theoretical methods. The guanidine loss of protonated arginine is proved to be an S(N)2 substitution on the delta-carbon of the side-chain, starting from species containing the N(epsilon)H-C(+)(N(eta)H(2))(N(eta')H(2)) or -N(epsilon) (+)H(2)-C(N(eta)H)(N(eta')H(2)) moieties and leads to formation to either protonated guanidine or protonated proline. In the corresponding transition structures the proline moiety is protonated. Under low-energy collision conditions the extra proton transfers to the guanidine moiety, leading to the formation of C(+)(NH(2))(3). On the other hand, the lifetime of the fragmenting species under high-energy collision conditions is shorter, resulting in enhanced formation of protonated proline and its dissociation products. The first step of ammonia loss is the leaving of a preformed NH(3) from tautomers containing the -N(epsilon)H-C(N(eta)H(3) (+))(N(eta')H) or -N(epsilon)-C(N(eta)H(3) (+))(N(eta')H(2)) moieties. The resulting protonated carbodiimide group can be stabilized by intramolecular nucleophilic attack, leading to ring formation. Overall, reactions involved in the ammonia loss from protonated arginine can be considered as an S(N)1 substitution on the central zeta-carbon of the guanidine group.     

Role of 2-oxo and 2-thioxo modifications on the fragmentation reactions of the histidine radical cation

The fragmentation reactions of the radical cations, M(·+), of histidine, 2-oxo-histidine and 2-thioxo-histidine were examined using a combination of experiments performed on a linear ion trap and density functional theory (DFT) calculations at the UB3-LYP/6-311++G(d,p) level of theory. Low-energy collision-induced dissociation (CID) on [Cu(II)(terpy)(M)](2+) complexes, formed via electrospray ionisation, produced the radical cations in sufficient yield to examine their unimolecular chemistry via an additional stage of CID. The CID spectrum of the radical cation of histidine is dominated by loss of water with the next most abundant ion arising from the combined loss of H(2)O and CO. In contrast, the CID spectra of the radical cations of 2-oxo-histidine and 2-thioxo-histidine are dominated by the combined loss of CO(2) and NH=CH(2). The observed differences are rationalised via DFT calculations which reveal that the barrier associated with loss of CO(2) from the histidine radical cation is higher than that for loss of H(2)O. In contrast, the introduction of an oxygen or sulfur atom into the side chain of histidine results in a reversal of the order of these barrier heights, thus making CO(2) loss the preferred pathway.     

Fragmentation pathways of organoarsenical compounds by electrospray ion trap multiple mass spectrometry (MS6)

With its detection limit well below 30 pg microl(-1) LC-MS-MS has become a sensitive and thus popular analytical technique for organoarsenical compounds. Collision induced dissociation (CID) is a valuable tool for speciation and facilitates a positive identification of the species detected. However, it is not straightforward to understand the fragmentation pathways of organoarsenical compounds when only CID-MS-MS data is available. In the present paper we have investigated multiple mass spectrometry (MSn, n=1, 2, 3, 4, 5, 6) with electrospray CID fragmentation for a number of organoarsenical compounds likely to occur in the environment. The investigated compounds were tetramethylarsonium, trimethylarsinoxide, monomethylarsonic acid, dimethylarsinic acid, arsenobetaine, arsenocholine, and dimethylarsinoylethanol. By CID of (protonated) organoarsenical cations mostly even-electron fragments are produced after neutral loss processes such as elimination of H2, H2O, CH4, C2H2, C2H4, C2H6, HCHO, CH3OH, C2H5OH, C2H4O, and CH2CO. However, abundant odd-electron fragments are also formed after elimination of radical species. Evidence for reduction of As(V) to As(III) as a driving force in the odd-electron ion formation is obtained.     

Serine-phosphoric acid cluster ions studied by electrospray ionization and tandem mass spectrometry

More than 310 kinds of cluster ions of S(m) P(n) H(k) (k+) are observed in a single ESI mass spectrum of a mixed solution of serine and phosphoric acid. Some typical cluster ions are selected, activated by collision in a FT ICR cell, and the dissociation pathways were deduced in detail. For large singly protonated ions, the collisions cause the ejection of subunits of serine or phosphoric acid subsequently producing the ions of S(2) P(4) H(1) (1+) , which can be further dissociated by the loss of phosphoric acid molecules in turn and form the protonated serine dimer and monomer. However, for the doubly protonated ions, the dissociation pathways change from the loss of a protonated serine dimer for the ions of S(7) P(9) H(2) (2+) to the neutral loss of H(3) PO(4) for the ions of S(7) P(12) H(2) (2+) or the neutral loss of serine or H(3) PO(4) for the larger clusters, indicating the effect of cluster sizes on the process of dissociation. The structure of S(2) P(4) H(1) (1+) is suggested based on B3LYP/6-31G(d,p) calculations. The diversity and structural orderliness of the hetero-cluster ions are mainly attributed to the network of hydrogen bonds inside the cluster ions and the extraordinary amphotericity of the components.     

Homolytic cleavages in pyridinium ions,an excited state process

The favored fragmentation pathway for protonated and alkylated pyridinium cations of the general formula p-XC(6)H(4)CH(2)CH(2)CH=CH Py(+)R (R=H, Me; Py=pyridine) is a C-C homolytic cleavage. The tendency to form radicals is higher for alkylated pyridinium cations than for the protonated ones that can also afford closed-shell products. Theoretical calculations show that the singlet-triplet gap for transient structures with an elongated benzylic C-C bond is very low and the formation of radicals may result from mixing of these states. In addition to the notable substituent effect on the fragmentation efficiency of the cations under study, calculated results show a clear substituent effect on the singlet-triplet transitions. We also observe that triphenylphosphonium cations behave notably different. Thus, the pyridinium system that contains a p-chloro benzyl moiety loses a benzyl radical readily while the analogous triphenylphosphonium cation is very stable under the same conditions.     

Theoretical study of HCN(+) + C2H2 reaction

A detailed theoretical investigation for the ion-molecule reaction of HCN (+) with C 2H 2 is performed at the B3LYP/6-311G(d,p) and CCSD(T)/6-311++G(3df,2pd) (single-point) levels. Possible energetically allowed reaction pathways leading to various low-lying dissociation products are probed. It is shown that eight dissociation products P 1 (H 2C 3N (+)+H), P 2 (CN+C 2H 3 (+)), P 3 (HC 3N (+)+H 2), P 4 (HCCCNH (+)+H), P 5 (H 2NCCC (+)+H), P 6 (HCNCCH (+)+H), P 7 (C 2H 2 (+)+HCN), and P 8 (C 2H 2 (+)+HNC) are both thermodynamically and kinetically accessible. Among the eight dissociation products, P 1 is the most abundant product. P 7 and P 3 are the second and third feasible products but much less competitive than P 1 , followed by the almost negligible product P 2 . Other products, P 4 (HCCCNH (+)+H), P 5 (HCNCCH (+)+H), P 6 (H 2NCCC (+)+H), and P 8 (C 2H 2 (+)+HNC) may become feasible at high temperatures. Because the intermediates and transition states involved in the reaction HCN (+) + C 2H 2 are all lower than the reactant in energy, the title reaction is expected to be rapid, as is consistent with the measured large rate constant at room temperature. The present calculation results may provide a useful guide for understanding the mechanism of HCN (+) toward other pi-bonded molecules.     

Energy-variable collision-induced dissociation study of 1,3,5-trisubstituted 2-pyrazolines by electrospray mass spectrometry

The pathways of the ([M+H](+)) ions generated from electrosprayed solutions of nine 1,3,5-trisubstituted 2-pyrazoline derivatives were studied using energy-variable collision-induced dissociation (CID) and pseudo-MS(3) (in-source CID combined with MS/MS) methods. It was shown that under CID conditions several structurally important product ions such as the 2,4-substituted azete and 1,2-substituted aziridine ions were formed. The compositions of the product ions were unambiguously supported by accurate mass measurement (mass accuracy was within +/- 8 ppm). The fragmentation pathways of 1,3,5-trisubstituted 2-pyrazolines were established by means of pseudo-MS(3). It was found that a substituent at the N-1 position greatly affects the fragmentation pathways of the 2-pyrazoline derivatives. The 1-acetyl- and 1-propionyl-2-pyrazoline derivatives dissociate mainly through formation of a pyrazolium cation, while in the case of 1-phenyl-2-pyrazoline derivatives product ions arising from the consecutive fragmentation of 2,4-substituted azete and 1,2-substituted aziridine ions dominate. Another interesting finding is the formation of a radical cation from the 2,4-substituted azete by loss of a methyl radical. The fragmentation yield as a function of the collision energy for each of the 1,3,5-trisubstituted 2-pyrazolines was determined. Based on the fragmentation yield versus collision energy curves the relative fragmentation stabilities for the 1,3,5-trisubstituted 2-pyrazoline derivatives were also evaluated.     

Sulfonamide bond cleavage in benzenesulfonamides and rearrangement of the resulting p‐aminophenylsulfonyl cations: application to a 2‐pyrimidinyloxybenzylaminobenzenesulfonamide herbicide

The gas‐phase fragmentation/rearrangement reactions of compound 1, [2‐(4,6‐dimethoxypyrimidin‐2‐yloxy)‐benzyl]‐[4‐(piperidine‐1‐sulfonyl)phenyl]amine, have been examined by Fourier transform ion cyclotron resonance mass spectrometry (FTICR‐MS). The analyses reveal that under sustained off‐resonance irradiation collision‐induced dissociation (SORI‐CID) conditions in the FTICR cell, protonated 1 undergoes two competitive pathways initiated by different protonation positions. The first pathway is initiated by protonation on the amino group and yields only one fragment ion due to loss of the entire benzenesulfonamide moiety. In the second pathway, protonation of the sulfonamide group leads to cleavage of a sulfonamide bond with loss of the neutral piperidine, followed by loss of SO via a sulfonyl cation rearrangement. An intramolecular S_NAr mechanism is proposed to rationalize the rearrangement of the p‐aminophenylsulfonyl cation and the resulting SO loss. To test the generality of this process, SORI‐CID spectra of protonated sulfamethoxazole and of the p‐aminophenylsulfonyl cation (SBN) were obtained. For the SBN ion, SORI‐CID experiments as well as density functional theory (B3LYP) calculations show that rearrangement, assigned as a S_NAr reaction of the sulfonyl cation group, can account for the observed SO loss process. Candidate transition state structures were optimized at the B3LYP/6‐31+G (d, p) level of theory using the Gaussian98 molecular modeling package. The computational results show that the barrier for SO loss from SBN is much lower than that for SO₂ loss, which satisfactorily rationalizes the SORI‐CID experimental results for SBN. Moreover, it is proposed that a fragment ion at m/z 196 in the MS/MS spectrum of protonated 1 is formed via the ion resulting from SO loss via a second intramolecular S_NAr mechanism. Copyright © 2005 John Wiley & Sons, Ltd.