Charge-transfer complexes of meso-substituted porphines

Charge-transfer (CT) complexes of 5,10,15,20-tetramethyl-21H,23H-porphine [H₂(tmp)] and 5,10,15,20-tetraphenyl-21H,23H-porphine [H₂(tpp)] have been prepared with TCNQ-type (TCNQ = 7,7,8,8-tetracyanoquinodimethane) acceptors. The complexes crystallize in a mixed-stacked structure. The electronic state of the complexes has been investigated by combining structural geometry information of the acceptors with vibrational spectroscopy data. The complexes were found to possess neutral ground states. The difference between the donor oxidation potential and the acceptor reduction potential (ΔE) also supports this designation of their electronic states. The CT absorption energy shows a linear correlation with ΔE, which is expected for CT complexes in their neutral ground states. The frontier orbitals of the porphyrin donor that participate in the CT interactions have been examined by calculating the overlap integral between the donor occupied molecular orbitals and acceptor LUMO in the complexes. In the H₂(tmp) and H₂(tpp) complexes, a_2u- and a_1u-type porphyrin HOMO and next-HOMO, respectively, are suggested to both be contributors to the establishment of π–π* CT interactions and formation of the complex.     

Spectroscopic properties of cyclophane/anthracene and cyclophane/9-fluorenone complexes in dichloromethane

Host/guest interactions of cyclophane/anthracene (C/A) and cyclophane/9-fluorenone (C/F) complexes in dichloromethane, where the cyclophane molecule is the host, are investigated. The stability constants, log K_a, for the C/A and C/F complexes are determined by absorption and fluorescence spectroscopy. For the C/A system, log K_a is 4.2±0.2 as determined from absorption (at 325 nm) and emission (at 382, 403 and 427 nm) spectroscopic data. The analogous measurements yield 3.6±0.2 from absorption (at 309 nm) and emission (at 505 nm) spectroscopic data for the C/F system. Heats of formation of these complexes were determined by measuring the complex association constants at 25, 29 and 32 °C. These results reveal that binding of the anthracene guest by this cyclophane molecule is thermodynamically favored over that for a 9-fluorenone guest. Excited state lifetimes of these systems are also determined.     

ORGANIZATION OF PIGMENT-PROTEIN COMPLEXES INTO MACRODOMAINS IN THE THYLAKOID MEMBRANES OF WILD-TYPE and CHLOROPHYLL fo-LESS MUTANT OF BARLEY AS REVEALED BY CIRCULAR DICHROISM

The organization of pigment-protein complexes into large chiral macrodomains was investigated in wild-type and chlorophyll b-less mutant thylakoid membranes of barley. The variations in the anomalous circular dichroism bands and in the angular-dependence of circular intensity differential scattering showed that in wild-type chloroplasts, the formation of macrodomains was governed by interactions of the light-harvesting chlorophyll alb complexes (LHCII). Two external factors could be identified which regulate the parameters of the anomalous circular dichroism signal: (i) electrostatic screening by divalent cations under conditions that favor membrane stacking and (ii) the osmotic pressure of the medium, which is suggested to affect the lateral interactions between complexes and influence the packing-density of particles. These two factors governed preferentially the negative and the positive anomalous circular dichroism signals, respectively. In the chlorina f-2 mutant thylakoid membranes, deficient in most chlorophyll b binding proteins, the formation of macrodomains which gave rise to the anomalous circular dichroism signals was still regulated by these same external factors. However, in the absence of major LHCII polypeptides the formation of macrodomains was apparently mediated by other complexes having weaker interaction capabilities. As a consequence, the size of the macrodomains under comparable conditions appeared smaller in the mutant than in the wild-type thylakoid membranes. Circular dichroism is a valuable probe for examining the long-range interactions between pigment-protein complexes which participate in the formation and stabilization of membrane ultrastruc-ture. A functional role of macrodomains in long-range energy migration processes is proposed.     

Ab initio calculations of group IVA tetrachloride complexes: IX. Special features of the energy characteristics of the complexes

Quantum-chemical calculations of systems Cl₄M L and Cl₄M 2L (M = Si, Ge) with full geometry optimization and with a fixed M L distance, as well as calculations of the individual components of the complexes are performed by the RHF/6-31G(d) and B3LYP/6-311+G(2d,p) methods. It is shown that in the crystal state the molecular form may differ from that most favored by energy. The total energy of trans-octahedral complexes of GeCl₄ with organic ligands is lower than the sum of the energies of their constituent components, while that of analogous SiCl₄ complexes may be either lower or higher than the sum of the energies of their constituent components. Even though trigonal-bipyramidal complexes of MCl₄ with organic ligands are commonly energetically unfavorable, they still can form. The formation of MCl₄ complexes is affected substantially by intermolecular interactions in crystal.     

FT-IR study of the conformation and proton acceptor ability of N-tertiobutoxycarbonylsarcosine N′-methylamide and N-tertiobutoxycarbonylsarcosine N′,N′-dimethylacetamide

Two model dipeptides, N-tertiobutoxycarbonylsarcosine N′-methylamide (BSMA) and N-tertiobutoxycarbonylsarcosine N′,N′-dimethylamide (BSDA) are investigated by FT-IR spectrometry. The conformation of BSMA is very sensitive to the environment. In solvents of weak polarity (carbon tetrachloride, cyclohexane), BSMA accomodates the extended and seven-membered ring conformation, but in 1,2-dichloroethane, the C₇ conformers are greatly destabilized. Hydrogen bonding between BSMA or BSDA and phenols is studied in carbon tetrachloride. The thermodynamic data (equilibrium constants and enthalpies of complex formation) show that the BSMA complexes are stronger than the BSDA complexes. The spectroscopic data suggest that for BSMA, complex formation occurs at the O atom of the amide function while for BSDA about 50% of the complexes are formed on the O atom of the urethane group. The differences between the two sarcosine dipeptides are discussed in terms of cooperative and steric effects. It can be concluded that the global polarity of the medium exerts a greater influence on the conformation of the C₇ dipeptides than the specific interactions taking place on a given site of the molecule.     

Mutual interplay between pnicogen–π and tetrel bond in PF<Subscript>3</Subscript>⊥X–Pyr…SiH<Subscript>3</Subscript>CN complexes: NMR,SAPT, AIM,NBO, and MEP analysis

The mutual interplay between pnicogen–π and tetrel bond in the formation of PF₃⊥X–Pyr…SiH₃CN ternary complexes has been investigated via a computational chemistry at MP2/aug-cc-pVDZ level of theory. We proved by computational NMR data the effect of electron-withdrawing and electron-donating substituents on ^1tJ(N-Si) across ¹⁵N...³⁵Si tetrel bonds was investigated at M06-2X/aug-cc-pVDZ levels of theory in PF₃⊥CN–Pyr…SiH₃CN complex. The nature of the interactions has been studied by means of symmetry-adapted perturbation theory (SAPT) and molecular electrostatic potentials (MEP). The electrostatic interaction played a major role in the change of tetrel bond interaction strength in the X–Pyr…SiH₃CN binary systems, whereas the change of pnicogen–π strength in the PF₃⊥X–Pyr complexes was caused jointly by the dispersion interactions. Energy decomposition indicates that the percentage of the electrostatic term in the tetrel bond system constitutes in the total attractive binding energies, while the percentage of the dispersion term in the pnicogen bonding constitutes in the attractive binding energies. In addition, atoms in molecules (AIM) and natural bond orbital (NBO) analyses were also performed to unveil the mechanism of these interactions in the title complexes.     

Estimating the energy of intramolecular hydrogen bonds in chitosan oligomers

The effect the number of chitosan monomer units CTS_n (n = 1–5), the protonation of chitosan dimers, and the interaction between CTS_n (n = 1–3) and acetate ions have on the energy of intramolecular hydrogen bonds is investigated by means of QTAIM analysis and solving the vibrational problem within the cluster-continuum model. It is established that the number of H-bonds in CTS_n is 2n ? 1 and the total energy of H-bonds grows by ~20 kJ/mol. It is concluded that the hydrogen bonds between CTS and acetate ions play a major role in the stabilization of polyelectrolyte complexes in dilute acetic acid solutions of CTS.     

Thermodynamics of the hydrogenation of olefins catalyzed by Rh(I) and Ir(I) complexes

The homogeneous hydrogenation of cyclohexene catalyzed by Rh(I) and Ir(I) complexes of the terdentate ligands (L) HN(CH₂CH₂Aφ₂)₂ (A = P, As) was investigated in the temperature range 20 - 50°C. Thermodynamic parameters corresponding to the formation of the dihydrido complexes ML(H)₂Cl (M = Ir(I), Rh(I)) and the olefin complexes MLCl(olefin) were computed. The activation parameters corresponding to the rate constant were also calculated. An inverse relationship is found between the enthalpy of formation ΔH⁰ of the dihydrido complexes and the enthalpy of activation ΔH^≠ of the hydrogenation step. This relationship establishes the involvement of the dihydrido complexes as the active intermediates in olefin coordination and hydrogen transfer. The stereochemistry of the terdentate complexes in dihydride formation is discussed. It is concluded that the enthalpy of formation ΔH⁰ of the dihydrido complexes of terdentate ligands is very favourable, as there is no change in the configuration of the ligand in oxidative addition reaction. The significance of the steric factors in the hydrogenation step is discussed.     

Experimental and theoretical studies on inversion dynamics of dichloro(l-difluoromethionine-N,S)platinum(II) and dichloro(l-trifluoromethionine-N,S)platinum(II) complexes

Fluorinated analogues of methionine such as l-S-(difluoromethyl)homocysteine (l-difluoromethionine; DFM) and l-S-(trifluoromethyl)homocysteine (l-trifluoromethionine; TFM) have been demonstrated to be interesting analogues for incorporation into peptides and proteins. The presence of the fluorine nucleus adjacent to the sulfur atom in the side chain not only serves to alter the nucleophilicity and electron density of the sulfur atom but it can function as an important NMR spectroscopic (¹⁹F) probe. Additional information on the properties of these fluorinated amino acid analogues was obtained by studying their interactions with dipotassium tetrachloroplatinate (K₂PtCl₄). The resulting complexes, dichloro(l-difluoromethionine-N,S)platinum(II) and dichloro(l-trifluoromethionine-N,S)platinum(II) were investigated with respect to their sulfur inversion rates utilizing dynamic NMR methods. Inversion barriers for the DFM- and TFM-platinum complexes were experimentally determined to be 16.4 ± 0.2 and 18 ± 1 kcal/mol, respectively. Density functional calculations at the B3LYP/SDD level were also performed to model the structures and energies of the ground and transition states for these complexes.     

A graphic model for calculating the properties of alkylsilanes, based on the additivity of energy contributions

A 18-constant additive scheme for calculating the physicochemical properties of alkylsilanes is obtained, based on the transferability of subgraphs in molecular graphs of the homologic SiC _n H_{2n + 4} series of alkylsilanes. The model considers multiple nonvalence interactions through no more than one atom and pair nonvalence interactions through no more than three skeletal atoms along a molecular chain. A linear dependence is established within the classification of the structural elements in a molecule. The enthalpies of formation Δ_f H° (g, 298 K) for alkylsilanes SiC _n H_{2n + 4} not studied experimentally were calculated numerically by considering different approximations.     

Mechanism for the formation of bubble domains

Abstract

The mechanism for the formation and stabilization of acoustic bubble domains is investigated experimentally within the framework of the Akahane and Tako model which is based on the assumption of the formation of a system of defects in the layer of a cholestric liquid crystal, these defects pin the bubble domains. The theory takes no account of the interaction between bubble domains, this being valid in the case of a low density of domain packing. The correlation between the experimental results and theory is quite satisfactory, especially in the region of d/P ₀ < 1.5 where the bubble domain packing density is very low (where d is the thickness of the cholestric layer and P ₀ is the pitch of the helix).     

Conformational preferences of fluorocyclohexane and 1-fluoro-1-silacyclohexane molecules: ab initio study and NBO analysis

The molecular structure of the axial and equatorial conformers of fluorocyclohexane and 1-fluoro-1-silacyclohexane, H₂C(CH₂CH₂)₂XH–F (X = C or Si), as well as the thermodynamic equilibrium between these species were investigated by means of quantum chemical calculations up to MP2/aug-cc-pVTZ level of theory. According to MP2 data, these compounds consist of a mixture of conformers with chair conformation and C _s symmetry differing in the axial and equatorial position of the C–F/Si–F bonds (axial = 42/56 mol%, equatorial = 58/44 mol%) at T = 298 K. This corresponds to a free energy difference of A = (G _ax ? G _eq) = 0.19/?0.13 kcal mol^?1 for X = C/Si. NBO analysis revealed that the axial conformer of 1-fluoro-1-silacyclohexane is an example of stabilization of the form that is unfavorable in terms of conjugation effects; stabilization is achieved mainly due to steric interactions. The equatorial conformer of fluorocyclohexane is an example of stabilization of the form that is unfavorable in terms of electrostatic interactions; stabilization is achieved due to steric and conjugation effects.     

Structure and mechanism formation of polyelectrolyte complex obtained from PSS/PAH system: effect of molar mixing ratio, base–acid conditions, and ionic strength

Colloidal dispersions of polyelectrolyte complexes were prepared in aqueous solutions. We have used mixtures containing the strongly charged anionic polyelectrolyte sodium polystyrene sulfonate (PSS) and the weak cationic polyelectrolyte polyallylamine hydrochloride (PAH). Both polymers have the same molecular weight. The complexes were obtained by adding drop by drop a solution of the anionic polyelectrolyte to excess cationic polyelectrolyte. In these conditions, sodium polystyrene sulfonate and polyallylamine hydrochloride self-assembled in nanometer-range complexes; the self-assembly is driven by electrostatic interactions, as well as by entropy changes due to counterion release. The electrostatic interactions were controlled in several ways: by changing the C _PSS/C _PAH concentration ratio, by modifying the pH (and thus the protonation degree of polyallylamine hydrochloride), and by adding sodium chloride (screened interactions). Dynamic light scattering experiments demonstrated that the hydrodynamics radius of the polyelectrolyte complex increases, changing from soluble to insoluble complex formation, when some physicochemical parameters are increased: the concentration ratio between polyelectrolytes, the sodium chloride concentration, and pH. Zeta potential measurements, as a function of the C _PSS/C _PAH concentration ratio, as well as of pH and ionic strength, allow us to state that the resulting particles have a structure constituted by a neutral core surrounded by a positively charged shell. The polyelectrolyte complexes have globular shapes, as observed by electron microscopy.     

Molecular complexes of iodine with metal acetylacetonates

The ability of metal acetylacetonates to act as electron donors and form molecular complexes with I₂ was studied by examining the electronic, vibrational, and NMR spectra of the complexes. The specific compounds used in the study were Al(acac)₃ Sc(acac)₃ Zr(acac)₄, and Th(acac)₄. The electronic spectra of mixtures of the metal acetylacetonates with I₂ in CHCl₃ had, in addition to the absorption peaks characteristic of the free components, two peaks that were due to the charge transfer complexes. For each complex, the highest wavelength peak (near 360 nm) was assigned to the blue shifted I₂ band, while the lower peak (between 270 nm and 305 nm) was attributed to the intermolecular charge transfer. In the i.r. spectra of each complex, the major effect of complexation was to cause the I₂ stretching frequency to appear between 145 cm⁻¹ and 160 cm⁻¹. The positions of the absorption peaks in both the electronic and vibrational spectra led to the conclusion that in these complexes, I₂ had received a large amount of charge from the donors. Complex formation had little effect on the NMR spectra of the donors. Association constants of 1:1 complexes were determined from the concentration dependence of the absorbance of the blue shifted I₂ bands. Values of ΔHdg and ΔS°₂₉₈ for the complex formation were obtained from the temperature variation of the association constants. The data indicate that the complexes are extremely stable species. Both the stability of the complexes and the high degree of charge transfer were rationalized by considering a model for the intermolecular interactions that involved two M(acac) rings simultaneously transferring charge from one donor to an I₂ molecule.     

Donor—acceptor interactions of substituted benzenes with molecular chlorine and carbon disulfide

CNDO molecular orbital calculations have been performed to analyze donor—acceptor interactions between molecular chlorine and benzene, toluene, mesitylene and hexamethylbenzene and the, as yet, unreported chlorine—hexafluorobenzene and carbon disulfide—benzene pairs. The stabilization energy and the dipole moment and its derivative (?p/?R_CICI) calculated for the benzene—chlorine complex are in good agreement with the estimated experimental values. The trends in the experimental stabilization energies and the Cl-Cl vibrational frequencies with increasing methyl substitution appear to be well reproduced by the calculations. The charge transferred from the benzene donor is polarized toward the outer chlorine atom or sulfur atom. For hexafluorobenzene-chlorine the direction of electronic charge polarization is reversed from that of the benzene and methylbenzene complexes. The calculated results are discussed within the framework of Muliiken's simplified resonance theory for complexes.     

ESR studies on the intermolecular interactions of the mononitrosyl chelate complexes of iron

Using ESR the exchange of ligands was studied between mononitrosyl chelate complexes of iron and chelate complexes of nickel with the following ligands: dithiocarbamate (dtc), dithiophosphate (dtp), dithiocarbonate (xant), 8-quinolinethiolate, 8-hydroxyquinoline, acetylacetonate and o-hydroxy- benzylideneaniline. For some mixed-ligand complexes the exchange of the covalency of the metal—ligand bond was evaluated. The interaction of the mononitrosyl complexes with Lewis acids (I₂ and Br₂) and bases (pyridine, DMFA and DMSO) was studied in the cases of Fe(NO)(dtc)₂, Fe(NO)(dtp)₂ and Fe(NO)(xant)₂. In both of the latter cases the interactions with Lewis acids and bases led to the formation of paramagnetic dinitrosyl complexes, while with Fe(NO)(dtc)₂ hexacoordinated mononitrosyl complexes were formed. A reaction pathway is suggested and discussed for the formation of the dinitrosyl complexes and their composition.     

Influence of Substitution on the Supramolecular Chemistry of Cycloparaphenylene-Fullerene Complexes

We present a comprehensive host-guest study of four substituted and unsubstituted [10]cycloparaphenylenes with the fullerenes C₆₀ and C₇₀. Within this study, the influence on the complexation behavior was investigated experimentally and computationally. Due to the increased steric demand the substitution on the nanohoop results in an energetic penalty, which could be partially compensated by additional substituent-fullerene interactions. These attractive interactions are intensified in the C₇₀ complexes and with an increased degree of substitution. For the computational investigation conformer ensembles were taken into account, providing reliable structures with Boltzmann weighted energies. An analysis of the noncovalent interactions elucidated the origin of the enhanced substituent-C₇₀ interaction. The ellipsoid fullerene C₇₀ can be considered as a π-extended version of C₆₀, which is able to increase the attractive van der Waals interactions within these supramolecular complexes.     

Structural Characterization,Antimicrobial Activity and BSA/DNA Binding Affinity of New Silver(I) Complexes with Thianthrene and 1,8-Naphthyridine

Three new silver(I) complexes [Ag(NO₃)(tia)(H₂O)]_n (Ag1), [Ag(CF₃SO₃)(1,8-naph)]_n (Ag2) and [Ag₂(1,8-naph)₂(H₂O)_1.2](PF₆)₂ (Ag3), where tia is thianthrene and 1,8-naph is 1,8-naphthyridine, were synthesized and structurally characterized by different spectroscopic and electrochemical methods and their crystal structures were determined by single-crystal X-ray diffraction analysis. Their antimicrobial potential was evaluated against four bacterial and three Candida species, and the obtained results revealed that these complexes showed significant activity toward the Gram-positive Staphylococcus aureus, Gram-negative Pseudomonas aeruginosa and the investigated Candida species with minimal inhibitory concentration (MIC) values in the range 1.56–7.81 μg/mL. On the other hand, tia and 1,8-naph ligands were not active against the investigated strains, suggesting that their complexation with Ag(I) ion results in the formation of antimicrobial compounds. Moreover, low toxicity of the complexes was detected by in vivo model Caenorhabditis elegans. The interaction of the complexes with calf thymus DNA (ct-DNA) and bovine serum albumin (BSA) was studied to evaluate their binding affinity towards these biomolecules for possible insights into the mode of antimicrobial activity. The binding affinity of Ag1–3 to BSA was higher than that for DNA, indicating that proteins could be more favorable binding sites for these complexes in comparison to the nucleic acids.     

Nature and Strength of Weak O⋅⋅⋅O Interactions in Nitryl Halide Dimers

The use of real space functions and molecular graphs has pushed some chemists to wonder: Are interactions between negatively charged oxygen atoms possible? In this contribution we analyze whether there is a real interaction between oxygen atoms in nitryl halide dimers (XNO₂)₂ (X=F, Cl, Br and I) and in tetranitromethane and derivatives. Based on ab-initio and density functional theories (DFT) methods, we show these complexes are weakly stabilized. Energy decomposition analyses based on local molecular orbitals (LMOEDA) and interacting quantum atoms (IQA) reveal both dispersion and exchange play a crucial role in the stabilization of these complexes. Electron charge density and IQA analyses indicate that the oxygen atoms are connected by privileged exchange channels. In addition, electrostatic interactions between O and N atoms are also vital for the stabilization of the complexes. Finally, a reasonable explanation is given for the dynamic behavior of nitryl groups in tetranitromethane and derivatives.     

Solution Equilibria and Thermodynamic Studies of Complexation of Divalent Transition Metal Ions with Some Triazoles and Biologically Important Aliphatic Dicarboxylic Acids in Aqueous Media

The formation of binary and ternary complexes of the divalent transition metal ions Cu^II, Ni^II, Zn^II, and Co^II with some triazoles [1,2,4-triazole (TRZ), 3-mercapto-1,2,4-triazole, and 3-amino-1,2,4-triazole], and the biologically important aliphatic dicarboxylic acids adipic, succinic, malic, malonic, maleic, tartaric, and oxalic acid, was investigated in aqueous solutions using the potentiometric technique at 25 °C and I = 0.10 mol·dm^?3 NaNO₃. The formation of 1:1 and 1:2 binary complexes and 1:1:1 ternary complexes was inferred from the corresponding titration curves. The formation of ternary complexes occurs in a stepwise manner with the carboxylic acids acting as primary ligands. The ionization constants (pK _a) of the investigated ligands were redetermined and used for determining the stability constants of the binary and ternary complexes formed in solution. The order of stability of the ternary complexes was investigated in terms of the nature of the triazole, carboxylic acid and metal ion used. The ?log₁₀ K values, percent relative stabilization, and log₁₀ X for the ternary complexes have been evaluated and discussed. The concentration distributions of the various species formed in solution were evaluated. The ionization constants of TRZ and malic acid and stability constants of their binary and ternary complexes with Cu^II, Ni^II, and Co^II metal ions were studied at four different temperatures (15, 25, 35, and 45 °C) and the corresponding thermodynamic parameters have been evaluated and discussed. The complexation behavior of ternary complexes was ascertained using conductivity measurements. In addition, the formation of ternary complexes in solution has been confirmed by using UV–visible spectrophotometry.