A new urea gelator: incorporation of intra- and intermolecular hydrogen bonding for stable 1D self-assembly

A new bisurea gelator derived from 2,6-diaminopyridine has been developed. It efficiently gelates common organic and liquid crystalline (LC) solvents by forming elongated self-assembled fibres in solvents. X-Ray crystallography and 1H NMR measurements reveal that two urea groups in pyridine-based bisurea compounds form different hydrogen bonding patterns. One of two urea units is involved in intramolecular hydrogen bonding with the pyridyl nitrogen, while the other urea unit forms bifurcated intermolecular hydrogen bonding. This hydrogen-bonded structure is key for the fibrous self-assembly along with the efficient gelation. In addition, LC gels based on the pyridine-based gelator exhibit good electrooptic properties. These results indicate that the pyridine-based bisurea compound is a good gelator not only effective in gelation but also useful as a component of functional soft materials.     

Molecular organic crystals: from barely porous to really porous

Holey suitable crystals: A trisbenzimidazolone molecule self-assembles by hydrogen bonding to form a permanently porous crystal with an apparent surface area, SA(BET) , of 2796?m(2) g(-1) , demonstrating that extrinsic, intermolecular porosity is a viable strategy for highly porous materials.     

Revisiting the electronic excited-state hydrogen bonding dynamics of coumarin chromophore in alcohols: Undoubtedly strengthened not cleaved

In the present work, the electronic excited-state hydrogen bonding dynamics of coumarin chromophore in alcohols is revisited. The time-dependent density functional theory (TDDFT) method has been performed to investigate the intermolecular hydrogen bonding between Coumarin 151 (C151) and methanol (MeOH) solvent in the electronic excited state. Three types of intermolecular hydrogen bonds can be formed in the hydrogen-bonded C151–(MeOH)₃ complex. We have demonstrated again that intermolecular hydrogen bonds between C151 and methanol molecules can be significantly strengthened upon photoexcitation to the electronically excited state of C151 chromophore. Our results are consistent with the intermolecular hydrogen bond strengthening in the electronically excited state of Coumarin 102 in alcoholic solvents, which has been demonstrated for the first time by Zhao et al. At the same time, the electronic excited-state hydrogen bond cleavage mechanism of photoexcited coumarin chromophores in alcohols proposed in some other studies about the hydrogen bonding dynamics is undoubtedly excluded. Hence, we believe that the two contrary dynamic mechanisms for intermolecular hydrogen bonding in electronically excited states of coumarin chromophores in alcohols are clarified here.     

Analysis of the structures,energetics, and vibrational frequencies for the hydrogen-bonded interaction of nucleic acid bases with Carmustine pharmaceutical agent: a detailed computational approach

In the present study, it is attempted to scrutinize the hydrogen bonding interaction between Carmustine drug and DNA pyrimidine bases by means of density functional theory calculations regarding their geometries, binding energies, vibrational frequencies, and topological features of the electron density in the gas phase and the water solution. Based on the density functional theory results, it is found that the process of intermolecular interaction between Carmustine drug and nucleobases is exothermic and all of the optimized configurations are stable. Furthermore, the negative stability energy represented by a polarizable continuum model shows the significant increase in the solubility of the nucleobase after hydrogen bonding intermolecular interaction in the presence of water solvent. It is also found that the intermolecular hydrogen bonds between drug and the nucleobases play the significant role in the stability of the physisorption configurations. Hydrogen bond energies for hydrogen-bonded complexes are obtained from Espinosa method and the atoms-in-molecules theory are also applied to get a more precise insight into the nature of the intermolecular hydrogen bond interactions.     

Hydrogen-bonded donor--acceptor compounds for organic ferroelectric materials

Organic ferroelectrics are multifunctional candidates for future organic electronic and optical devices. In spite of their potential, only a few organic compounds are known to exhibit a ferroelectric transition. The conventional approach to ferroelectrics, in general, relies on the use of asymmetric dipolar molecules and/or substituents. Recently, distinct design strategies have been developed using the molecular compounds of binary- or multi-components, combined with "non-covalent" forces: charge-transfer interactions and/or hydrogen bonding. This article focuses on the supramolecular systems of hydrogen-bonded acid and base molecules. Ferroelectricity and a significant dielectric response, as well as an antiferroelectric ordering induced by proton transfer, are demonstrated in the hydrogen-bonded chains composed of 2,5-dihydroxy-p-benzoquinone derivatives and nitrogen-containing aromatic bases.     

组装合成超分子液晶聚合物动态功能材料

从电荷转移相互作用。离子相互作用及氢键组装三个方面综述了通过分子自组装合成超分子液晶聚合物近年来的最新研究成果。总结 阴谋家类体系作为动态功能材料在器件化及应用方面所取得的重要进展，并展望了这一领域今后的发展方向。     

Dithienophosphole‐Based Phosphinamides with Intriguing Self‐Assembly Behavior

A new, highly adaptable type of phosphinamide‐based hydrogen bonding is representatively demonstrated in π‐conjugated phosphole materials. The rotational flexibility of these intermolecular P=O?H?N hydrogen bonds is demonstrated by X‐ray crystallography and variable‐concentration NMR spectroscopy. In addition to crystalline compounds, phosphinamide hydrogen bonding was successfully introduced into the self‐assembly of soft crystals, liquid crystals, and organogels, thus highlighting the high general value of this type of interaction for the formation of organic soft materials.     

Preorganizing linear (self-complementary) quadruple hydrogen-bonding arrays using intramolecular hydrogen bonding as the sole force

[structures: see text] In this article we describe a rational approach for prefixing multiple cooperative binding sites in an ideal spatial arrangement on a structurally rigid backbone, constrained exclusively by intramolecular hydrogen bonding. The idea is exemplified by the ability of the self-assembling constructs 1a-e and 2a,b to form hydrogen-bonded dimers, whose structural preorganization has been solely effected by intramolecular hydrogen bonding. The readily accessible amidinourea backbone has been used as a common platform for the construction of a variety of such self-assembling systems. ESI mass spectrometry and single-crystal X-ray diffraction studies have been particularly effective in investigating the self-assembling propensities of these systems. Remarkably, most the H-bonded dimers reported herein undergo an unusual mode of self-assembly, using intermolecular four-membered ring hydrogen-bonded interaction, affording extended supramolecular networks.     

Functional materials: from hard to soft porous frameworks

This Review aims to give an overview of recent research in the area of porous, organic-inorganic and purely organic, functional materials. Possibilities for introducing organic groups that exhibit chemical and/or physical functions into porous materials will be described, with a focus on the incorporation of such functional groups as a supporting part of the pore walls. The number of organic groups in the network can be increased such that porous, purely organic materials are obtained.     

Designing Hydrogen‐Bonded Organic Frameworks (HOFs) with Permanent Porosity

Designing organic components that can be used to construct porous materials enables the preparation of tailored functionalized materials. Research into porous materials has seen a resurgence in the past decade as a result of finding of self‐standing porous molecular crystals (PMCs). Particularly, a number of crystalline systems with permanent porosity that are formed by self‐assembly through hydrogen bonding (H‐bonding) have been developed. Such systems are called hydrogen‐bonded organic frameworks (HOFs). Herein we systematically describe H‐bonding patterns (supramolecular synthons) and molecular structures (tectons) that have been used to achieve thermal and chemical durability, a large surface area, and functions, such as selective gas sorption and separation, which can provide design principles for constructing HOFs with permanent porosity.     

Hydrogen-Bonded Organic Frameworks: Structural Design and Emerging Applications

Constructing well-organized organic frameworks with tailor-made functionalities potentially boost multi-domain applications. Hydrogen bonding (H-bonding) is a category of general and weak intermolecular interactions when compared with covalent bonding or metal-ligand coordination. Porous frameworks mainly assembled by H-bonding (named hydrogen-bonded organic frameworks, HOFs) are intrinsically capable of decomposing and regenerating, a distinctive advantage to improve their processability while expanding the applicability. This paper summarizes the basic building concepts of HOFs, including feasible hydrogen bonded motifs, effective molecular structures, and their emerging applications.     

Low Molecular Weight Gelators for Organic Fluids: Gelation Using a Family of Cyclo(dipeptide)s

Simple cyclo(dipeptide)s consisting of diverse amino acids are able to cause physical gelation in a wide variety of organic fluids, including edible oils, glyceryl esters, alcohols, and aromatic molecules. Minimum gel concentrations, FTIR spectroscopy, NMR spectroscopy, and electron micrograph are used to characterize gel phenomenon. The intermolecular hydrogen bonding between N-H and C=O in cyclo(dipeptide)s plays an important role in gelation. FTIR and X-ray diffraction data suggest that the aggregate responsible for gel is an assembly of hydrogen-bonded molecular ladders, which are initially formed from numerous molecules through intermolecular hydrogen bonding. The ladder-like aggregates are intertwined and interlocked, and finally immobilize organic fluids. The gelation ability is discussed in connection with the three-component solubility parameters of solvents. Copyright 2000 Academic Press.     

Dipeptide-induced chirality organization

This review describes an outline of dipeptide-induced chirality organization by using molecular scaffolds. A variety of ferrocene-dipeptide conjugates as bioorganometallics are designed to induce chirality-organized structures of peptides. The ferrocene serves as a reliable organometallic scaffold with a central reverse-turn unit for the construction of protein secondary structures via intramolecular hydrogen bondings, wherein the attached dipeptide strands are constrained within the appropriate dimensions. Another interesting feature of ferrocene-dipeptide conjugates is their strong tendency to self-assemble through contribution of available hydrogen bonding sites for helical architectures in solid states. Symmetrical introduction of two dipeptide chains into a urea molecular scaffold is performed to induce the formation of the chiral hydrogen-bonded duplex, wherein each hydrogen-bonded duplex is connected by continuous intermolecular hydrogen bonds to form a double helix-like arrangement.     

Two-dimensional molecular sieves: structure design by computer simulations

Nanoporous molecular networks formed spontaneously by organic molecules adsorbed on solid substrates are promising materials for future nanotechnological applications related to separation and catalysis. With their unique ordered structure comprising nanocavities of a regular shape planar networks can be treated as 2D analogs of bulk nanoporous materials. In this report we demonstrate how the Monte Carlo simulation method can be effectively used to predict morphology of self-assembled porous molecular architectures based on structural properties of a building block. The simulated results refer to the assemblies created by cross-shaped organic molecules which are stabilized by different intermolecular interactions, including hydrogen bonding and van der Waals interactions. It is demonstrated that tuning of size and aspect ratio of the building block enables the creation of largely diversified extended structures comprising pores of a square and rectangular shape. Our theoretical predictions can be helpful in custom design of functional adsorbed overlayers for controlled deposition, sensing and separation of guest molecules.     

A TD-DFT study on the hydrogen bonding of three esculetin complexes in electronically excited states: strengthening and weakening

Time-dependent density functional theory (TD-DFT) method was used to study the excited-state hydrogen bonding of three esculetin complexes formed with aprotic solvents. The geometric structures, molecular orbitals (MOs), electronic spectra and the infrared (IR) spectra of the three doubly hydrogen-bonded complexes formed by esculetin and aprotic solvents dimethylsulfoxide (DMSO), tetrahyrofuran (THF) and acetonitrile (ACN) in both ground state S(0) and the first singlet excited state S(1) were calculated by the combined DFT and TD-DFT methods with the COSMO solvation model. Two intermolecular hydrogen bonds can be formed between esculetin and the aprotic solvent in each hydrogen-bonded complex. Based on the calculated bond lengths of the hydrogen bonds and the groups involved in the formation of the intermolecular hydrogen bonds in different electronic states, it is demonstrated that one of the two hydrogen bonds formed in each hydrogen-bonded complex is strengthened while the other one is weakened upon photoexcitation. Furthermore, it is found that the strength of the intermolecular hydrogen bonds formed in the three complexes becomes weaker as the solvents change from DMSO, via THF, to ACN, which is suggested to be due to the decrease of the hydrogen bond accepting (HBA) ability of the solvents. The spectral shifts of the calculated IR spectra further confirm the strengthening and weakening of the intermolecular hydrogen bonds upon the electronic excitation. The variations of the intermolecular hydrogen bond strengths in both S(0) and S(1) states are proposed to be the main reasons for the gradual spectral shifts in the absorption and fluorescence spectra both theoretically and experimentally.     

Ultrafast hydrogen bond strengthening of the photoexcited fluorenone in alcohols for facilitating the fluorescence quenching

The time-dependent density functional theory (TDDFT) method was performed to investigate the excited-state hydrogen-bonding dynamics of fluorenone (FN) in hydrogen donating methanol (MeOH) solvent. The infrared spectra of the hydrogen-bonded FN-MeOH complex in both the ground state and the electronically excited states are calculated using the TDDFT method, since the ultrafast hydrogen-bonding dynamics can be investigated by monitoring the vibrational absorption spectra of some hydrogen-bonded groups in different electronic states. We demonstrated that the intermolecular hydrogen bond C=O...H-O between fluorenone and methanol molecules is significantly strengthened in the electronically excited-state upon photoexcitation of the hydrogen-bonded FM-MeOH complex. The hydrogen bond strengthening in electronically excited states can be used to explain well all the spectral features of fluorenone chromophore in alcoholic solvents. Furthermore, the radiationless deactivation via internal conversion (IC) can be facilitated by the hydrogen bond strengthening in the excited state. At the same time, quantum yields of the excited-state deactivation via fluorescence are correspondingly decreased. Therefore, the total fluorescence of fluorenone in polar protic solvents can be drastically quenched by hydrogen bonding.     

Tuning the physisorption of molecular hydrogen: binding to aromatic,hetero-aromatic and metal-organic framework materials

We present a study on the binding properties of molecular hydrogen to several polar aromatic molecules and to a model for the metal-oxide corner of the metal organic framework materials recently investigated as promising supports for hydrogen storage. Density functional theory employing the Perdew Wang exchange-correlation functional and second order Møller-Plesset calculations are used to determine the equilibrium structures of complexes with molecular hydrogen and their stability. It is found that for most hetero-aromatics the edge sites for molecular hydrogen physisorption have stabilities comparable to the top sites. The DFT predicted binding energies compare favorably with those estimated at MP2 level, and get closer to the MP2 results for increased electrostatic contributions (induced by the polar aromatics) to the intermolecular interaction. Vibrational frequencies are also computed at the DFT level, and infrared activities of the H₂ stretching frequency are compared for the various complexes. Pyrrole, pyridine and n-oxide pyridine are predicted to form the more stable complexes among one-ring aromatics. The computed binding energies to metal-organic framework materials are in good agreement with experimental observations. It is suggested that replacement of the organic linker in MOF materials with some of the more efficient aromatics investigated here might contribute to enhance the H₂ storage properties of mixed inorganic–organic materials.     

New hydrogen-bonded comblike polyimides with mesogenic side chains for stable orientation and fast switching of liquid crystals

ABSTRACT

New supramolecular comblike polyimides with mesogenic side chains for stable homeotropic orientation and fast electro-optical switching of liquid crystals (LCs) have been prepared through selective intermolecular hydrogen bonding between 4-(4-heptylphenyl)benzoic acid (4HPB) and host polyimide. A low concentration of 4HPB as the mesogenic guest molecule was hydrogen-bonded to polyimide backbone leading to the self-assembled comblike polyimide with enhanced homeotropic orientation properties. The electro-optical characteristics of the LC device containing hydrogen-bonded comblike polyimide exhibited better performance than those of LC cell with conventional polyimide. Because the conventional covalent approach for preparation of polyimides requires considerable synthetic efforts to achieve new functionality in polyimide materials, the proposed noncovalent method is a simple one and highly cost effective. Our controlled methodology should find wide application for the fabrication of functional alignment materials requiring high orientation ability.     

Amidinium sulfonate hydrogen-bonded organic framework with fluorescence amplification function for sensitive aniline detection

Although the construction of specific functional crystalline materials is still challenging, the multi-component molecular assembly has become a key solution for the design of functional materials. Here, we report a hydrogen-bonded organic framework (HOF) material FJU-360 constructed from disodium 6?hydroxy-5-[(4-sulfophenyl)azo]-2-naphthalenesulfonate (SSY) and terephthalimidamide. The charge-assisted hydrogen bonding between amidinium and sulfonate makes FJU-360 produce much stronger fluorescence than SSY, and can be used as a luminescence sensor to rapidly quench aniline through luminescence quenching. FJU-360 is sensitive and highly selective for the detection of aniline, and the detection limit reached 3.2 nmol/L, which is the lowest value reported currently. The mechanism of aniline response was analyzed through the aniline@FJU-360 single crystal structure, and the luminescence mechanism was clarified through density function theory calculations. This work is an important step towards the rational synthesis and assembly of sensing materials.     

Hydrogen bonding structure and stability of alpha-chitin studied by 13C solid-state NMR

The structure and stability of hydrogen bonds in alpha-chitin were investigated by (13)C solid-state NMR measurements at different temperatures. Splitting of the carbonyl carbon signal for alpha-chitin was interpreted as two types of hydrogen bonding; the peaks at 173.5 and 175.8 ppm were assigned, respectively, to a carbonyl carbon hydrogen bonded exclusively to the NH group and a carbonyl carbon hydrogen-bonded to both NH and C(6)-OH groups. Approximately 60% of carbonyl groups exclusively contributed to the intermolecular hydrogen bonding and ca. 40% of them to the combination of intermolecular and intramolecular hydrogen bonding. Internal rotation around the C(5)-C(6) bond was detected at 55 degrees C.