Crystal Structure and Density Functional Theory Studies of （p-Methoxyphenyl） Thiosemicarbazide

1 INTRODUCTION Recently, the discoveries of antitumor effects ofinorganic complexes, especially of metal complexes,and their applications for curing cancer diseaseshave received increasing attention[1]. As a ligandwith potential S and N donors, thiosem…     

Density Functional Theory Study on the Adsorption of HCNH and CNH2 on Cu（100） Surface

The HCNH and CNH2 adsorption on different coordination sites of Cu（100） was theoretically studied considering the cluster approach. The present calculations show that the bridge site is the most favorite for CNH2 perpendicularly adsorbed on the Cu（100） surface via the C atom. For HCNH absorbed on the Cu（100） surface, the parallel adsorption mode with the C and N atoms nearly directly above the adjacent top sites of Cu（100） surface is the most favored. Both CNH2 and HCNH are strongly bound to the Cu（100） surface with CNH2 which is lightly stable （2.51 kJ·mol^-1）, indicating that both species may be co-adsorbed on the Cu（100） surface.     

Density Functional Theory Study on La Complex with Schiff-base as Building Block

1 INTRODUCTION Recently, there has been a growing interest[1~5] inlanthanon complexes because of their abundant stru-ctural characters and important biologic activities.The complexes are extensively used as coordinationand stabilization agents[6, 7] for the measures of me-tallic ions, antibacterial and anticancer drugs[8], cata-lysts for vitamin B6 in amination and oxidation re-actions[9], biological models of N2, O2 carriers andaminophenol asymmertry synthesis and preparationof nonprote…     

Density Functional Theory Study on the Structural and Electronic Properties of Ge（SiO_2）_n Clusters

The geometry,stability,binding energy and electronic properties of(SiO2)n and Ge(SiO2)n clusters(n = 7) have been investigated by Density functional theory(DFT).The results show that the lowest energy structures of Ge(SiO2)n are obtained by adding one Ge on the end site of the O atom or the Si near end site of the O atom in(SiO2)n.The chemical activation of Ge-(SiO2)n is improved compared with(SiO2)n.The calculated second-order difference of energies and fragmentation energies show that the Ge(SiO2)n clusters with n = 2 or 5 are stable.     

Density Functional Theory and MP2 Calculations of the Transition States and Reaction Paths on Coupling Reaction of Methane through Plasma

The two possible reaction paths of producing ethane on coupling reaction of methane through plasma were theoretically investigated by B3LYP and MP2 methods with 6-311G^* respectively and further compared with the previous results calculated from B3LYP/6-31G^*. The new investigated results consistently confirmed the previous conclusion. And the influences of the calculation methods and basis sets on the calculated results were also discussed.     

Thermodynamic Model for the Solubility of TcO2⋅xH2O in Aqueous Oxalate Systems

The room temperature solubility of amorphous, hydrous technetium(IV) oxide (TcO₂⋅xH₂O) was studied across a broad range of pH values extending from 1.5 to 12 and in oxalate concentrations from dilute (10⁻⁶ mol⋅kg⁻¹) to complete saturation with respect to sodium bioxalate at lower pH values, and to saturation with respect to sodium oxalate at higher pH values. The solubility was measured to very long equilibration times (i.e., as long a 1000 days or longer). The thermodynamic modeling results show that the dominant species in solution must have at least one more hydroxyl moiety present in the complex than proposed by previous investigators (e.g., TcO(OH)Ox⁻ rather than TcO(Ox)(aq)). Inclusion of the single previously unidentified species TcO(OH)Ox⁻ in our aqueous thermodynamic model explains a wider range of observed solubility data for TcO₂⋅xH₂O(am) in the presence of oxalate and over a broad range of pH values. Inclusion of this species is also supported by the recently proposed thermodynamic data for the TcO(OH)⁺ hydrolysis species that indicates that this species is stable at pH values as low as one.     

A Density Functional Theory Study on the Adsorption of CN on Ni(111) Surface

1 INTRODUCTION Cyanide, CN, is an important free-radical mole-cule of one carbon chemistry, organic chemistry, free-radical chemistry and cosmochemistry. And the im-portant industrial processes, such as the Andrussovreaction, depend on the reactivity of CN bond[1]. Thechemistry of cyanide is also important in the surfacechemistry of a number of C- and N-containing sys-tems[1, . During the past decade, the adsorption of 2]CN and CN-containing molecules on transition metalsurfa…     

Labeling and Probing the Silica Surface Using Mechanochemistry and 17O NMR Spectroscopy**

In recent years, there has been increasing interest in developing cost-efficient, fast, and user-friendly ¹⁷O enrichment protocols to help to understand the structure and reactivity of materials by using ¹⁷O NMR spectroscopy. Here, we show for the first time how ball milling (BM) can be used to selectively and efficiently enrich the surface of fumed silica, which is widely used at industrial scale. Short milling times (up to 15 min) allowed modulation of the enrichment level (up to ca. 5 %) without significantly changing the nature of the material. High-precision ¹⁷O compositions were measured at different milling times by using large-geometry secondary-ion mass spectrometry (LG-SIMS). High-resolution ¹⁷O NMR analyses (including at 35.2 T) allowed clear identification of the signals from siloxane (Si−O−Si) and silanols (Si−OH), while DNP analyses, performed by using direct ¹⁷O polarization and indirect ¹⁷O{¹H} CP excitation, agreed with selective labeling of the surface. Information on the distribution of Si−OH environments at the surface was obtained from 2D ¹H−¹⁷O D-HMQC correlations. Finally, the surface-labeled silica was reacted with titania and using ¹⁷O DNP, their common interface was probed and Si−O−Ti bonds identified.     

A Density Functional Theory Study on the Adsorption of CN on Ni（Ⅲ） Surface

The interaction of cyanide (CN) with different sites on Ni(111) surface is studied by using density functional theory (DPT). Ni19 cluster is used to simulate the surface. The present calculations show that the end-on bonded (through C atom) configuration is much more preferable than the side-on bonded CN or other configurations on the same adsorption site. For all adsorption modes, adsorption energies at the top, bridge, and three-fold sites on Ni(111) are comparable, with the bridge site of the end-on bonded CN (through C atom) more favorable than other adsorption sites. CN vibrational frequencies are red-shifted at all cases, except that the end-on CN bonded(through C atom) on the top site is blue-shifted. The bonding of CN on the Ni(111) surface is largely ionic.     

Density Functional Theory Study of Water Diffusion and Clustering on Pd（111）

1 INTRODUCTION The interaction of water molecules with metal sur- faces plays a vital role in a number of important pro- cesses, such as corrosion, heterogeneous catalysis, electrochemical processes in aqueous solutions, hydrogen production, etc.[1] The structure and pro- perties of water adsorbed on well-defined metal sur- faces have been the subject of numerous experi- mental and theoretical investigations. There have been a number of experimental studies of water on metal surfaces throu…     

Structure of AcMet-Gly and Its Interaction with Palladium(II) Tetraaqua Complex Studied by Electrospray Mass Spectrometry and Density Functional Theory

Introduction Palladium(II) complexes, as a promising artificial metallopeptidase, have been extensively studied for se-lective cleavage of methionine and histidine-containing dipeptides,1-11 oligopeptides12-16 and proteins.16-20 Dipeptides AcMet-aa and AcHis-aa, in which the amino-terminus is protected by acetylation and aa is an amino acid residue, are usually cleaved at the Met-aa and His-aa bond with a modest but significant turn-over.6,7,9 In oligopeptides which contain Met or His or b…     

Structure of AcMet-Gly and Its Interaction with Palladium（Ⅱ） Tetraaqua Complex Studied by Electrospray Mass Spectrometry and Density Functional Theory

The structure of dipepide AcMet‐Gly was determined by X‐ray crystallographic analysis. It possesses mono‐clinic, space group P2₁ (No. 4). with cell dimensions of α=0.8571(2) nm, b=0.5871(2) nm, c= 1.197(3) nm, β= 99.290(10)°. V=0.5944(15) nm³, Z=2, μ=2.74 cm^?1. Mononuclear chelates, described as [Pd(X)(S,N,O‐AcMet‐Gly)]^?, in which Pd(II) is coordinated by thioether, deprotonated amide nitrogen, carbonyl oxygen of me‐thionine and X (AcMetGly or other ligands present in aqueous solution or in mobile phase solution), were detected 5 min after mixing AcMet‐Gly with [Pd(H₂O)₄]^2‐ at room temperature using electrospray ionization mass spectrometry. The geometry of [Pd(H₂O)(S,N,O‐AcMet‐Gly)]^? is optimized at density functional B3LYP/LanL2DZ level. The fused five‐ and six‐membered chelate is responsible for cleavage of Met‐Gly bond. This is the first time to provide a direct evidence for Pd(II)‐mediated cleavage of dipeptides via external solvent attack.     

Electronic Structures of O2 Molecules Chemisorbed on a（8,0） SWNT with Different Oxygen Contents：A Density Functional Theory Study

We report a theoretical study on the electronic structures of O2 chemisorbed on a(8,0) SWNT with different oxygen contents of 6.25,12.5 and 25%,respectively.On the basis of DFT calculations,we find that eight O2 molecules chemisorbed on the(8,0) SWNT aligned in the middle row of the circumference of the tube in proportional spacing way,is seen to become metallic,and a significant increase in conductivity is expected.There are different electronic structures of the functionalized systems related to different oxygen contents or O2 molecules' chemisorbed positions.     

Studies on the Oxazaborolidine-catalyzed Enantioselective Reduction of 3-Morpholin-4-yl-1-phenyl-1-propanone with Density Functional Theory

Density functional theory (DFT) has been applied to study the enantioselective reduction of 3-morpholin-4-yl-l-phenyl-l-propanone with borane catalyzed by (S)-4-benzyl-5,5-diphenyl-l,3,2-oxazaborolidine at the B3LYP/6-31G* level. All molecular species involved in the four reaction steps have been fully optimized and the structural parameters are provided, and the micro process of reaction was also investigated. The catalyst-alkoxyborane adduct formed in step Ⅲ exhibits a B-O-B-N tetra-atomic ring. Reaction coordination calculations show that BH3 can react with 3-morpholin-4-yl-l-phenyl-l-propanone spontaneously, resulting in the need of 2 tool BH3 in the reaction.     

Study of H2O and HOCH2CH2OH Adsorption on the Relaxation Surface of β-Si3N4(0001) by Density Functional Theory

Density functional theory (DFT) B3LYP method is used to theoretically investigate the adsorption conformations of H2O and glycol on the relaxation surface of β-Si3N4(0001) with cluster models. For H2O, the most stable structure is that adsorbed through the H atom lying above a N(3) site of the relaxation surface of β-Si3N4(0001); while for glycol, it is the one adsorbed via the H atom lying above the center of Si(2) and N(3) of the same relaxation surface. The adsorption energy, adsorption bond and transfer electrons of the two adsorbed substances prove that glycol is easy to be adsorbed on the relaxation surface of β-Si3N4(0001).     

A Density Functional Theory Study on Electronic Structure and Second—order Nonlinear Optical Properties of Some Push—Pull Molecules

Time-dependent density-functional theory(TDDFT)has been applied to calculate the electronic structure and second-order nonlinear optical(NLO) properties of some organic molecules.The two-dimensional(2-D)charge transfer charateristics of calculated molecules were studied and compared with corresponding experimental results.All the theoretical results agree well with the measurement.For 2-D molecule with two-fold symmetry,the dominant charge transfer is off-diagonal,while for three-fold symmetry 2-D molecule,the dominant charge transfer is not only between branches and central group but also among branches.     

Study of H2O and HOCH2CH2OH Adsorption on the Relaxation Surface of β-Si3N4（0001） by Density Functional Theory

Density functional theory （DFT） B3LYP method is used to theoretically investigate the adsorption conformations of H2O and glycol on the relaxation surface of β-Si3N4（0001） with cluster models. For H2O, the most stable structure is that adsorbed through the H atom lying above a N（3） site of the relaxation surface of β-Si3N4（0001）; while for glycol, it is the one adsorbed via the H atom lying above the center of Si（2） and N（3） of the same relaxation surface. The adsorption energy, adsorption bond and transfer electrons of the two adsorbed substances prove that glycol is easy to be adsorbed on the relaxation surface of β-Si3N4（0001）.     

The reHISS Three-Range Exchange Functional with an Optimal Variation of Hartree–Fock and Its Use in the reHISSB-D Density Functional Theory Method

In the present study, we have reparametrized the HISS exchange functional. The new “reHISS” exchange provides a balance between short- and mid-range Hartree–Fock exchange (HFX) and a large total HFX coverage, with a fast convergence to zero HFX in the long range. The five parameters in this functional (according to equations 3 and 4 in the main text) are c_SR = 0.15, c_MR = 2.5279, c_LR = 0, ω_SR = 0.27, and ω_LR = 0.2192. The combination of reHISS exchange with a reparametrized B97c-type correlation functional (Chan et al., J. Comput. Chem. 2017 , 38, 2307) and a D2 dispersion term (s₆ = 0.6) gives the reHISSB-D method. We find it to be more accurate than related screened-exchange methods and, importantly, its accuracy is more uniform across different properties. Fundamentally, our analysis suggests that the good performance of the reHISS exchange is related to it capturing a near-optimal proportion of HFX in the range of interelectronic distance that is important for many chemical properties, and we propose this range to be approximately 1–4Å. © 2018 Wiley Periodicals, Inc.     

Density Functional Study on the Reaction Mechanism for the Reaction of Ni^＋ with Ethane

The mechanism of the reaction of Ni^ (^2D) with ethane in the gas-phase was studied by using density functional theory.Both the B3LYP and BLYP functionals with standard all-electron basis sets are used to give the detailed information of the potential energy surface (PES) of [Ni,C2,H6]^ . The mechanisms forming the products CH4 and H2 in the reaction of Ni^ with ethane are proposed.The reductive eliminations of CH4 and H2 are typical addition-elimination reactions.Each of the two reactions consists of two elementary steps:C-C or C-H bond activations to form inserted species followed by isomerizations to from product-like intermediate.The rate determining steps for the elimination reactions of forming CH4 and H2 are the isomerization of the inserted species rather than C-C or C-H bond activations .The elimination reaction of forming H2 was found to be thermodynamically favored compared to that of CH4.     

Density Functional Study of the C Atom Adsorption on the α-Fe2O3 （001） Surface

The adsorption of C atoms on the α-Fe2O3(001) surface was studied based on density function theory(DFT) ,in which the exchange-correlation potential was chosen as the PBE(Perdew,Burke and Ernzerhof) generalized gradient approximation(GGA) with a plane wave basis set. Upon the optimization on different adsorption sites with coverage of 1/20 and 1/5 ML,it was found that the adsorption of C atoms on the α-Fe2O3(001) surface was chemical adsorption. The coverage can affect the adsorption behavior greatly. Under low coverage,the most stable adsorption geometry lied on the bridged site with the adsorption energy of about 3.22 eV;however,under high coverage,it located at the top site with the energy change of 8.79 eV. Strong chemical reaction has occurred between the C and O atoms at this site. The density of states and population analysis showed that the s,p orbitals of C and p orbital of O give the most contribution to the adsorption bonding. During the adsorption process,O atom shares the electrons with C,and C can only affect the outermost and subsurface layers of α-Fe2O3;the third layer can not be affected obviously.