Structure of N,N′,N″-tris(carboxymethyl)-1,3,5-benzenetricarboxamide trihydrate

The title compound, C₁₅H₁₅N₃O₉·3H₂O, crystallizes in the centrosymmetric space group R with a = 13.642(5), b = 13.642(5), c = 18.692(5) Å, D _calc = 1.440 g cm³, and z = 6. An extensive three-dimensional hydrogen bonded network is observed. The network arises from 15 hydrogen bonds per asymmetric unit. Six identical N—H···O hydrogen bonds are formed between two triacid molecules, which results in the face-to-face dimerization of the two triacid molecules. The dimers form extended sheets through hydrogen bond interaction with water molecules. The sheets are held together by hydrogen bonds via the water molecules. The planes of the benzenoid ring are parallel to each other.     

Synthesis and Crystal Structure of 3-Quinuclidinyl α-(Cyclopentyl-1-ene)-α-hydroxy-α-phenylacetate

Abstract The title compound 3-quinuclidinyl α-(cyclopentyl-1-ene)-α-hydroxy-α-phenylacetate was obtained by the reaction of methyl α-(cyclopentyl-1-ene)-α-hydroxy-α-phenylacetate with 3-quinuclidinol in n-heptane. Its structure was characterized by ¹H, ¹³C NMR, MS and X-ray single-crystal diffraction techniques: C₂₀H₂₅NO₃, M _r = 327.41, orthorhombic, space group P2₁2₁2₁ with a = 8.547(2), b = 11.428(4), c = 18.288(5) ?, V = 1786.3(9) ?³, Z = 4. The title compound comprises a tertiary α-hydroxy acid and a bicyclo[2.2.2]octan moiety. The crystal structure shows the presence of the intermolecular O(1)–H(1)···N(1) hydrogen bonds. Index Abstract The title compound, 3-quinuclidinyl α-(cyclopentyl-1-ene)-α-hydroxy-α-phenylacetate was obtained by the reaction of methyl α-(cyclopentyl-1-ene)-α-hydroxy-α-phenylacetate with 3-quinuclidinol in n-heptane and its crystal structure determined. The title compound comprises a tertiary α-hydroxy acid and a bicyclo[2.2.2]octan moiety. The crystal structure shows the presence of the intermolecular O(1)–H(1)···N(1) hydrogen bonds.      

Structure and spectroscopic properties of the 1∶2 complex of 3,5-dimethylpyridine with 3,5-dinitrobenzoic acid and its deuterated analog

The structure of the nondeuterated and deuterated complexes of 3,5-dimethylpyridine with 3,5-dinitrobenzoic acid in a stoichiometric ratio 12 have been determined by X-ray diffraction methods. The crystals of the nondeuterated complex are triclinic, space groupP¯1 witha=9.409(9),b=10.813(7),c=12.310(7)Å,a=95.75(5),=108.17(7), =91.46(7)° andZ=2. The crystals of the deuterated complex are monoclinic, space groupP2₁/c, witha=11.680(6),b=8.451(4),c=24.382(9)Å,=102.94(4)° andZ=4. Both structures have been solved by direct methods and refined toR=0.035 for 2235 and toR=0.044 for 1938 independent reflections for nondeuterated and deuterated crystal, respectively. The structures consist of 3,5-dimethylpyridinium cations and hydrogen (or deuterium) bis(3,5-dinitrobenzoate) anions. The N(1)⁺-H(N1)O(1)^–, O(7)-H(7)O(2), N(1)⁺-D(1)O(l)^– and O(7)-D(7)O(2) bond lengths are 2.644(4), 2.499(3), 2.739(5), and 2.526(5)Å, respectively. The IR spectra of both complexes within the proton (or deuteron) absorption range have been studied.     

Structure of 1-(2′-tosyloxyethoxy)-8-tosyloxy-9,10-anthraquinone

The title compound crystallizes in the monoclinic space group, P2₁/c;a=12.938(1),b=11.041(1),c=19.285(2) Å, =104.314(8)°,Z=4. Refinement based on 1660 unique observed reflections converged toR=0.054. The anthraquinone moiety is distorted due to intramolecular steric hindrance from the tosylate groups.     

Structure of 9-oxa-2,3-(4′-methoxy)-benzo bicyclo[4,3,0]non-1(6)-ene-7,8-dione: C13H10O4

The crystal and molecular structure of the title compound: C₁₃H₁₀O₄,M _r=230.22, determined by single crystal X-ray diffraction is reported. Crystals are monoclinic, space groupP2_l/c,a=3.991(3),b=21.381(4),c=12.289(4)Å,b=91.15(1)°,V=1048(1)Å₃,z=4,D _x=1.46Mg m^–3, (MoK)=0.7107 Å,m=0.87 mm^–1,F(000)=480,T=298 K. The structure was solved by direct methods and the finalR value is 0.071 (wR=0.055) for 795 independent observed reflections. The cyclohexadienic moiety of the molecule adopt a twist conformation.     

Molecular complexes of sulfonamides. 3. Structure of 5-methoxysulfadiazine (form II) and its 1∶1 complex with acetylsalicylic acid

The X-ray structure of the biologically most active polymorph (Form II) of 5-methoxysulfadiazine (1) and that of the 11 complex between this sulfonamide and acetylsalicylic acid (2) are reported. The polymorph1 is monoclinic, space groupP2₁/c witha=13.086(2) Å,b=5.583(1) Å,c=17.222(3) Å, =99.98(1)°,Z=4 and occurs as centrosymmetric hydrogen bonded (N–H...N) dimers in the crystal. This arrangement differs from that observed in other polymorphs of the drug. Complex2 is triclinic, ,a=8.102(1)Å,b=12.033(1) Å,c=12.170(2) Å, =111.67(1)°, =93.77(1)°, =103.82(1)°,Z=2. Complexation involves linear intermolecular hydrogen bonds, N–H...O=C and N...O–H, between the amide group and pyrimidinyl N atom of the sulfonamide and the carboxylic group of the acetylsalicylic acid. On complexation to form2, neither molecular component undergoes any major structural change.     

Synthesis and Structure of 1-Chlorosulfonyl-2-(4′-Nitrophenoxy)-5-Methylbenzene

Abstract  Diphenyl ethers are structural elements found in medicinally useful antibiotics such as vancomycin as well as in biological toxins in the environment such as dioxins. The purpose of this paper is to report the synthesis and characterization of the previously unreported 1-chlorosulfonyl-2-(4′-nitrophenoxy)-5-methylbenzene, a trisubstituted diphenyl ether derivative. ¹H NMR (CDCl₃) δ 2.45 (3H, methyl₅, s), 7.07 (1H, H₄, d, J ~8.27 Hz), 7.13 (2H, H_2′, H_6′, d, J ~9.0 Hz), 7.54 (1H, H₃, d, J ~8.28 Hz), 7.87 (1H, H₆, s), 8.22 (2H, H_3′, H_5′, J ~9 Hz); ¹³C NMR (CDCl₃) δ 20.7, 118.2, 121.9, 126.0, 129.8, 135.2, 135.8, 137.8, 143.8, 150.3, 161.4. An X-ray analysis has provided valuable insight into the effect of steric factors on the three dimensional shape of this compound which serves as a useful advanced intermediate in the synthesis of these biologically active molecules. A multistep synthesis of this molecule has been designed by retrosynthetic analysis as part of an ongoing program aimed at a function-oriented, multi-step economical synthesis of vancomycin lead antibiotics. Crystals are triclinic, space group P-1, a = 7.6537(15), b = 8.976(2), c = 11.050(2) ?, α = 67.645(11), β = 79.735(11), γ = 87.798(10)°, V = 690.5(2) ?³, Z = 2. Graphical Abstract  The synthesis and characterization of the previously unreported trisubstituted diphenyl ether derivative are reported. The phenyl rings form a dihedral angle of 64.49(4)° and the chlorosulfonyl group has a C–C–S–Cl torsion angle of 62.95(11)°.      

Structure of 1-ethyl-2-(2′-chloro-4′-nitrostyryl)benzimidazole

The title compound C₁₇H₁₄ClN₃O₂ (et-4-nsbiz) is monoclinic, witha=12.240(2),b=12.144(4),c=10.544(4)Å,=100.09(2)°,V=1543(1)ų,Z=4,D _x =1.411 g cm^–3, (MoK)=0.71073Å,=2.57 cm^–1,F(000)=680,M _r =327.77,T=298K. The structure was solved by heavy atom and Fourier methods and refined toR=0.049 for 1503 unique observed reflections in space groupP2₁/c. Except for the ethyl group, the molecule is almost planar, with a dihedral angle of 9.5(5)° between the benzimidazole and phenyl rings. The dihedral angle between the ethyl group and the benzimidazole ring to which it is attached is 91.5(2)°.     

Crystal Structure of Ozagrel Fumarate dihydrate (Ozagrel = (E)-3-[4-(1H-imidiazol-1-ylmethyl)phenyl]-2-propenic acid)

Abstract  

Ozagrel, (E)-3-[4-(1H-imidiazol-1-ylmethyl)phenyl]-2-propenic acid, crystallizes with fumaric acid in absolute ethanol to give the dihydrous fumarate salt, [(C₁₃H₁₃N₂O₂)₂]²⁺ [C₄H₂O₄]²⁻·2H₂O, which crystallizes in the monoclinic space group P2(1)/n with a = 4.7981(19), b = 11.101(6), c = 26.930(11) Å, β = 90.567(16)°, V = 1434.3(11) Å³, Z = 4, C₁₅H₁₆N₂O₅, M _r  = 304.30, D _c  = 1.409 g/cm³. In the crystal structure, fumaric acid transfers two protons to imidazole ring N atoms of ozagrel. And the resulting carboxylate anions are simultaneously hydrogen-boned to carboxylic group and imidazole ring of ozagrel to give rise to a 2D layer structure. Hydrogen-bonding interactions between water and fumarate dianion result in a 3D structure.     

Molecular structure of P-(2,4,6-tri-tert-buthylphenyl)-phenylmethylene(phenylsulfonylimino)-σ3λ5-phosphorane

The crystal and molecular structure of P-(2,4,6-tri-tert-buthylphenyl)-phenylmethylene (phenylsulfonylimino)-³⁵-phosphorane, 2,4,6-Bu^t ₃-C₆H₂-P(=CHPh)(=N--SO₂Ph), has been determined. Crystal data: triclinic, , a = 9.472(5), b = 11.427(5), c = 13.684(5) Å, = 90.61(3), = 101.21(4), = 97.02(4)°, V = 1441.1 ų, Z = 2, D _c = 1.20 g cm^–3. The observed in 1 noticeable elongation of the P=N bond 1.563(3) Å and shortening of the P=C bond 1.617(3)Å have been discussed in terms of the electron withdrawing ability of substituents on the basis of ab initio (HF/6–31+G**) calculations of the model systems.     

Structure of sodium bis(pentadecatungstodiphosphato)diaquatetrazincate hydrate (16∶1∶50)

Crystals of Na₁₆[Zn₄(H₂O)₂(-P₂W₁₅O₅₆)₂]·50H₂O are triclinic, , witha+14.670(5),b+14.661(5),c+19.817(3)Å, =84.95(3), =81.51(3), =65.73(3)^o. Least-squares refinement converged atR+0.053 for 5906 independent data withl>3(I). The centrosymmetric anion consists of two -P₂W₁₅O ₅₆ ^12– ligands attached to a planar group of four Zn²⁺, two of which also carry water molecules. The distortions in the ZnO₆ octahedra and in the W₁₅ framework of the ligands are smaller than the corresponding distortions in the otherwise similar [Cu₄(H₂O)₂(P₂W₁₅O₅₆)₂]^16– anion.     

Structure of lithium (picrate) (2,2′-bipyridyl)

The title compound C₁₆H₁₀N₅O₇Li is triclinic, witha=14.51(1),b=6.90(2),c=9.10(1) Å,=101.5(1),=67.1(2), =105.6°(1),Z=2 and space groupP¯1. Data were measured by photographic methods. The structure was solved by direct methods, and refined by full matrix least-squares. The refinement, based on 1337 reflections, gave the rather highR value of 0.11 because of poor quality data. The complex is dimeric. The coordination around the cation is distorted square-pyramidal. Two coordination sites are occupied by the nitrogen atoms of the bipyridyl ligand, two by the phenolic oxygen and oxygen ofo-nitro group, and the fifth coordination site is occupied by the phenolic oxygen belonging to the symmetry-related molecule (1–x,–y,1–z). Both oxygens act as bridges to form the dimer. The bridging is unsymmetrical, with Li-O (phenolic)=1.84(2) Å and Li¹-O (phenolic)=2.16(2) Å (whereI=1–x,–y, 1–Z).     

Structure and conformation of the monohydrate of N-t-boctyrosyl-proline (Boc-Tyr-Pro·H2O)

The structure and conformation of the monohydrate of N-t-boc-tyrosyl-proline (Boc-Tyr-Pro·H₂O) (C₁₉H₂₆O₆N₂·H₂O) has been investigated with X-ray crystallographic and spectroscopic methods. Boc-Tyr-Pro crystallized in an extendedtrans conformation in the space group P2₁2₁2₁ with cell dimensionsa=8.566(1),b=9.996(1),c=24.734(1). The conformation of Boc-Tyr-Pro reflex -helix type prolines. Three intermolecular hydrogen bonds are observed. Crystal water is involved in two hydrogen bonds (to the hydroxyl group of the C-terminal of the proline residue; to the carbonyl group of the t-Boc functionality) while the hydroxyl group of the tyrosyl residue (to the carbonyl group of the amide bond) is involved in one hydrogen bond. The puckering mode of the pyrrolidine ring of the proline residue is similar to what has been previously observed for other proline-containing peptides.Cis-trans isomerism is observed in the NMR spectra of Boc-Tyr-Pro with a predominance for the extended side chain for the tyrosyl residue.     

Crystal structure of 4-phenyl-3,5-dioxacyclohexyl-1, 1′-cyclopentane-2′,3″-(1,5,8,11-tetraoxacyclotridecane)

The structure of the title compound is determined by X-ray diffraction (DAR-UMB diffractometer, θ-θ/2θ scan mode, MoK _α radiation, direct method). The crystal is monoclinic, a = 24.582(6) Å, b = 22.812(8) Å, c = 8.647(3) Å, γ = 60.64(2)°, ρ _calcd = 1.232 g/cm³ space group A2/a, and Z = 8 for C₂₂H₃₂O₆. The molecule consists of four fragments: 13-crown-4 (A), 1,3-dioxane (B), a five-membered ring (C) acting as a bridge between fragments A and B, and a phenyl ring (D). Introduction of the bulky ring C as a bridge into the molecule results in significant deviations (up to ±0.014 Å) of the ether O atoms from planarity. The conformation of the macrocyclic fragment is [3433] according to the Dale notation. The C—H?O 1,4-interactions, which are energetically favorable occur in the propylene part of 13-crown-4: the C(2)?O(5) and C(4)?O(1) distances are 2.82 Å. The molecules in the structure form planar networks parallel to the xy plane. The intermolecular contacts correspond to the van der Waals interactions.     

Synthesis of 1 - (4-Alkoxy or Alkyl- Benzoyloxy-Phenyl) - 2- (4′- Pentylphenyl) - Ethanes. Influence of the Central Group on the Mesomorphic Properties

An homologous series of mesomorphic compounds, the I-(4-alkoxy or alkyl-benzoyloxyphényl)-2-(4′-pentylphenyl)-ethanes, has been synthesized. The compounds with R = alkyl have low-melting points and wide mesomorphic ranges, for example from 33.5°C to 106.5C. The compounds with R = alkoxy exhibit a smectic polymorphism; for example a compound of this series is successively smectic B, F and C. The influence of the central linkage when the ethane group is replaced by an ester, single bond, ethylene, azomethine, azo, methylenecetone or cetone groups, is discussed.     

On the stereochemistry of lignin model compounds of the arylglycerol-β-aryl ether type: Crystal structure oferythro-1-(4-hydroxy-3,5-dimethoxyphenyl)-2-(4-hydroxymethyl-2,6-dimethoxyphenoxy)-1,3-propanediol,C20H26O9

The crystal structure of erythro-1-(4-hydroxy-3,5-dimethoxyphenyl)-2-(4-hydroxymethyl-2,6-dimethoxyphenoxy)-1,3-propanediol, C₂₀H₂₆O₉, has been determined from single-crystal X-ray diffraction data. The compound crystallizes in the triclinic space groupP¯1 witha=8.705(6),b=8.893(5),c=13.211(8) Å,=106.23(5),=93.71(5), =82.97(5)° andZ=2. The structure was solved by direct methods. Full matrix least-squares refinement of 366 structural parameters gaveR=0.039 for 1402 observed [I>3a(I)] reflexions. The molecules are held together by van der Waals forces and moderately strong hydrogen bonds. Average bond distances: C(sp ²)-O 1.370(6) Å and C(sp ³)-O 1.426(14) Å.     

Peculiarities of the Electron Structure of Pseudobinary Alloys (GeTe)m–(Sb2Te3)n

Crystallography Reports - The electron band structure of GeTe, Sb2Te3, GeSb2Te4, and Ge2Sb2Te5 compounds has been calculated by the electron density functional method using the WIEN2k software...