有倾向性重连产生的反匹配网络

在具有网络结构的系统中度关联属性对于动力学行为具有重要的影响, 所以产生适当度关联网络的方法对于大量网络系统的研究具有重要的作用. 尽管产生正匹配网络的方法已经得到很好的验证, 但是产生反匹配网络的方法还没有被系统的讨论过. 重新连接网络中的边是产生度关联网络的一个常用方法. 这里我们研究使用重连方法产生反匹配无标度网络的有效性. 我们的研究表明, 有倾向的重连可以增强网络的反匹配属性. 但是有倾向重连不能使皮尔森度相关系数下降到-1, 而是存在一个依赖于网络参数的最小值. 我们研究了网络的主要参数对于网络度相关系数的影响, 包括网络尺寸, 网络的连接密度和网络节点的度差异程度. 研究表明在网络尺寸大的情况下和节点度差异性强的情况下, 重连的效果较差. 我们研究了真实Internet网络, 发现模型产生的网络经过重连不能达到真实网络的度关联系数.     

蛋白质相互作用网络特征的理论再现

无标度性、小世界性、功能模块结构及度负关联性是大量生物网络共同的特征. 为了理解生物网络无标度性、小世界性和度负关联性的形成机制, 研究者已经提出了各种各样基于复制和变异的网络增长模型. 在本文中,我们从生物学的角度通过引入偏爱小复制原则及变异和非均匀的异源二聚作用构建了一个简单的蛋白质相互作用网络演化模型.数值模拟结果表明,该演化模型几乎可以再现现在实测结果所公认的蛋白质相互作用网络的性质：无标度性、小世界性、度负关联性和功能模块结构. 我们的演化模型对理解蛋白质相互作用网络演化过程中的可能机制提供了一定的帮助. 关键词： 蛋白质相互作用网络 偏爱小 非均匀的异源二聚作用 功能模块结构     

Self-similarity, small-world, scale-free scaling, disassortativity, and robustness in hierarchical lattices

In this paper, firstly, we study analytically the topological features of a family of hierarchical lattices (HLs) from the view point of complex networks. We derive some basic properties of HLs controlled by a parameter q: scale-free degree distribution with exponent γ=2+ln 2/(ln q), null clustering coefficient, power-law behavior of grid coefficient, exponential growth of average path length (non-small-world), fractal scaling with dimension d_B=ln (2q)/(ln 2), and disassortativity. Our results show that scale-free networks are not always small-world, and support the conjecture that self-similar scale-free networks are not assortative. Secondly, we define a deterministic family of graphs called small-world hierarchical lattices (SWHLs). Our construction preserves the structure of hierarchical lattices, including its degree distribution, fractal architecture, clustering coefficient, while the small-world phenomenon arises. Finally, the dynamical processes of intentional attacks and collective synchronization are studied and the comparisons between HLs and Barabási-Albert (BA) networks as well as SWHLs are shown. We find that the self-similar property of HLs and SWHLs significantly increases the robustness of such networks against targeted damage on hubs, as compared to the very vulnerable non fractal BA networks, and that HLs have poorer synchronizability than their counterparts SWHLs and BA networks. We show that degree distribution of scale-free networks does not suffice to characterize their synchronizability, and that networks with smaller average path length are not always easier to synchronize.     

度关联无标度网络上的有倾向随机行走

有倾向随机行走是研究网络上数据包路由策略的有效方法. 由于许多真实技术网络包括互联网都具有负的度关联特征, 因此本文研究这种网络上的有倾向随机行走性质. 研究表明: 在负关联网络上粒子可以在连接度较大的节点上均匀分布, 而连接度小的节点上粒子较少; 负关联网络上随机行走的速度比非关联网络更快; 找到了负关联网络上的最佳倾向性系数, 在此情况下负关联网络上随机行走的速度远快于非关联网络. 负关联网络既可以利用度小的节点容纳粒子, 又可以利用度大的节点快速传输, 这是负关联网络上高行走效率产生的机制.     

Emergence of fractal scale-free networks from stochastic evolution on the Cayley tree

An unexpected recognition of fractal topology in some real-world scale-free networks has evoked again an interest in the mechanisms stimulating their evolution. To explain this phenomenon a few models of a deterministic construction as well as a probabilistic growth controlled by a tunable parameter have been proposed so far. A quite different approach based on the fully stochastic evolution of the fractal scale-free networks presented in this Letter counterpoises these former ideas. It is argued that the diffusive evolution of the network on the Cayley tree shapes its fractality, self-similarity and the branching number criticality without any control parameter. The last attribute of the scale-free network is an intrinsic property of the skeleton, a special type of spanning tree which determines its fractality.     

Rank-based model for weighted network with hierarchical organization and disassortative mixing

In this paper, we study a rank-based model for weighted network. The evolution rule of the network is based on the ranking of node strength, which couples the topological growth and the weight dynamics. Analytically and by simulations, we demonstrate that the generated networks recover the scale-free distributions of degree and strength in the whole region of the growth dynamics parameter (α>0). Moreover, this network evolution mechanism can also produce scale-free property of weight, which adds deeper comprehension of the networks growth in the presence of incomplete information. We also characterize the clustering and correlation properties of this class of networks. It is showed that at α=1 a structural phase transition occurs, and for α>1 the generated network simultaneously exhibits hierarchical organization and disassortative degree correlation, which is consistent with a wide range of biological networks.     

Pair correlations in scale-free networks

Correlation between nodes is found to be a common and important property in many complex networks. Here we investigate degree correlations of the Barabasi－Albert (BA) scale-free model with both analytical results and simulations, and find two neighbouring regions, a disassortative one for low degrees and a neutral one for high degrees. The average degree of the neighbours of a randomly picked node is expected to diverge in the limit of infinite network size. As a generalization of the concept of correlation, we also study the correlations of other scalar properties, including age and clustering coefficient. Finally we propose a correlation measurement in bipartite networks.     

Self-organized scale-free networks generated via Merging-and-Creation dynamics with preferential attachment

We study a self-organized scale-free network model generated using the Merging-and-Creation dynamics with preferential attachment. We show analytically that the introduction of preferential attachment has minimal impact on the steady-state degree distribution. However, we find also that the preferential attachment gives rise to a hierarchical modular structure and degree disassortativity, commonly found in technological networks.     

Role of fractal dimension in random walks on scale-free networks

Fractal dimension is central to understanding dynamical processes occurring on networks; however, the relation between fractal dimension and random walks on fractal scale-free networks has been rarely addressed, despite the fact that such networks are ubiquitous in real-life world. In this paper, we study the trapping problem on two families of networks. The first is deterministic, often called (x,y)-flowers; the other is random, which is a combination of (1,3)-flower and (2,4)-flower and thus called hybrid networks. The two network families display rich behavior as observed in various real systems, as well as some unique topological properties not shared by other networks. We derive analytically the average trapping time for random walks on both the (x,y)-flowers and the hybrid networks with an immobile trap positioned at an initial node, i.e., a hub node with the highest degree in the networks. Based on these analytical formulae, we show how the average trapping time scales with the network size. Comparing the obtained results, we further uncover that fractal dimension plays a decisive role in the behavior of average trapping time on fractal scale-free networks, i.e., the average trapping time decreases with an increasing fractal dimension.     

A packet routing strategy using neural networks on scale-free networks

We propose a dynamic packet routing strategy by using neural networks on scale-free networks. In this strategy, in order to determine the nodes to which the packets should be transmitted, we use path lengths to the destinations of the packets, and adjust the connection weights of the neural networks attached to the nodes from local information and the path lengths. The performances of this strategy on scale-free networks which have the same degree distribution and different degree correlations are compared to one another. Our numerical simulations confirm that this routing strategy is more effective than the shortest path based strategy on scale-free networks with any degree correlations and that the performance of our strategy on assortative scale-free networks is better than that on disassortative and uncorrelated scale-free networks.     

Impact of degree heterogeneity on the behavior of trapping in Koch networks

Previous work shows that the mean first-passage time (MFPT) for random walks to a given hub node (node with maximum degree) in uncorrelated random scale-free networks is closely related to the exponent γ of power-law degree distribution P(k) ～ k(-γ), which describes the extent of heterogeneity of scale-free network structure. However, extensive empirical research indicates that real networked systems also display ubiquitous degree correlations. In this paper, we address the trapping issue on the Koch networks, which is a special random walk with one trap fixed at a hub node. The Koch networks are power-law with the characteristic exponent γ in the range between 2 and 3, they are either assortative or disassortative. We calculate exactly the MFPT that is the average of first-passage time from all other nodes to the trap. The obtained explicit solution shows that in large networks the MFPT varies lineally with node number N, which is obviously independent of γ and is sharp contrast to the scaling behavior of MFPT observed for uncorrelated random scale-free networks, where γ influences qualitatively the MFPT of trapping problem.     

From unweighted to weighted networks with local information

In this paper, we analyze an evolving model with local information which can generate a class of networks by choosing different values of the parameter p. The model introduced exhibits the transition from unweighted networks to weighted networks because the distribution of the edge weight can be widely tuned. With the increase in the local information, the degree correlation of the network transforms from assortative to disassortative. We also study the distribution of the degree, strength and edge weight, which all show crossover between exponential and scale-free. Finally, an application of the proposed model to the study of the synchronization is considered. It is concluded that the synchronizability is enhanced when the heterogeneity of the edge weight is reduced.     

Absence of epidemic threshold in scale-free networks with degree correlations

Random scale-free networks have the peculiar property of being prone to the spreading of infections. Here we provide for the susceptible-infected-susceptible model an exact result showing that a scale-free degree distribution with diverging second moment is a sufficient condition to have null epidemic threshold in unstructured networks with either assortative or disassortative mixing. Degree correlations result therefore irrelevant for the epidemic spreading picture in these scale-free networks. The present result is related to the divergence of the average nearest neighbor's degree, enforced by the degree detailed balance condition.     

Experimental evidence for the interplay between individual wealth and transaction network

We conduct a market experiment with human agents in order to explore the structure of transaction networks and to study the dynamics of wealth accumulation. The experiment is carried out on our platform for 97 days with 2,095 effective participants and 16,936 times of transactions. From these data, the hybrid distribution (log-normal bulk and power-law tail) in the wealth is observed and we demonstrate that the transaction networks in our market are always scale-free and disassortative even for those with the size of the order of few hundred. We further discover that the individual wealth is correlated with its degree by a power-law function which allows us to relate the exponent of the transaction network degree distribution to the Pareto index in wealth distribution.     

Incompatibility networks as models of scale-free small-world graphs

We make a mapping from Sierpinski fractals to a new class of networks, the incompatibility networks, which are scale-free, small-world, disassortative, and maximal planar graphs. Some relevant characteristics of the networks such as degree distribution, clustering coefficient, average path length, and degree correlations are computed analytically and found to be peculiarly rich. The method of network representation can be applied to some real-life systems making it possible to study the complexity of real networked systems within the framework of complex network theory.     

一种基于随机行走和策略连接的网络演化模型

本文提出了一个基于随机行走和策略选择的复杂网络局域演化模型RAPA. 新节点加入系统不需要全局知识,而是通过随机行走构造局域世界;然后依据概率采用随机连接,"扶贫"连接或"亲富"连接策略,从局域世界中选择节点增加连接边;最终自组织演化具有幂律特点的复杂网络. 初步的解析计算和仿真实验都表明,RAPA模型不仅重现了具有小世界特性、整体上的无标度特性,还可以演化出小变量饱和以及指数截断等现象,同时也具有明显的聚类特性,并能够构造出同配或异配等不同混合模式的网络. 关键词： 复杂网络 模型 随机行走 策略连接     

Monomer-dimer model on a scale-free small-world network

The explicit determination of the number of monomer-dimer arrangements on a network is a theoretical challenge, and exact solutions to monomer-dimer problem are available only for few limiting graphs with a single monomer on the boundary, e.g., rectangular lattice and quartic lattice; however, analytical research (even numerical result) for monomer-dimer problem on scale-free small-world networks is still missing despite the fact that a vast variety of real systems display simultaneously scale-free and small-world structures. In this paper, we address the monomer-dimer problem defined on a scale-free small-world network and obtain the exact formula for the number of all possible monomer-dimer arrangements on the network, based on which we also determine the asymptotic growth constant of the number of monomer-dimer arrangements in the network. We show that the obtained asymptotic growth constant is much less than its counterparts corresponding to two-dimensional lattice and Sierpinski fractal having the same average degree as the studied network, which indicates from another aspect that scale-free networks have a fundamentally distinct architecture as opposed to regular lattices and fractals without power-law behavior.     

Effect of node deleting on network structure

The ever-increasing knowledge of the structure of various real-world networks has uncovered their complex multi-mechanism-governed evolution processes. Therefore, a better understanding of the structure and evolution of these networked complex systems requires us to describe such processes in a more detailed and realistic manner. In this paper, we introduce a new type of network growth rule which comprises addition and deletion of nodes, and propose an evolving network model to investigate the effect of node deleting on network structure. It is found that, with the introduction of node deleting, network structure is significantly transformed. In particular, degree distribution of the network undergoes a transition from scale-free to exponential forms as the intensity of node deleting increases. At the same time, nontrivial disassortative degree correlation develops spontaneously as a natural result of network evolution in the model. We also demonstrate that node deleting introduced in the model does not destroy the connectedness of a growing network so long as the increasing rate of edges is not excessively small. In addition, it is found that node deleting will weaken but not eliminate the small-world effect of a growing network, and generally it will decrease the clustering coefficient in a network.     

Jamming in complex networks with degree correlation

We study the effects of the degree-degree correlations on the pressure congestion J when we apply a dynamical process on scale free complex networks using the gradient network approach. We find that the pressure congestion for disassortative (assortative) networks is lower (bigger) than the one for uncorrelated networks which allow us to affirm that disassortative networks enhance transport through them. This result agree with the fact that many real world transportation networks naturally evolve to this kind of correlation. We explain our results showing that for the disassortative case the clusters in the gradient network turn out to be as much elongated as possible, reducing the pressure congestion J and observing the opposite behavior for the assortative case. Finally we apply our model to real world networks, and the results agree with our theoretical model.     

Multifractal analysis of complex networks

Complex networks have recently attracted much attention in diverse areas of science and technology.Many networks such as the WWW and biological networks are known to display spatial heterogeneity which can be characterized by their fractal dimensions.Multifractal analysis is a useful way to systematically describe the spatial heterogeneity of both theoretical and experimental fractal patterns.In this paper,we introduce a new box-covering algorithm for multifractal analysis of complex networks.This algorithm is used to calculate the generalized fractal dimensions D q of some theoretical networks,namely scale-free networks,small world networks,and random networks,and one kind of real network,namely protein-protein interaction networks of different species.Our numerical results indicate the existence of multifractality in scale-free networks and protein-protein interaction networks,while the multifractal behavior is not clear-cut for small world networks and random networks.The possible variation of D q due to changes in the parametersof the theoretical network models is also discussed.