Synthesis,psychotropic and anticancer activity of 2,2‐dimethyl‐5‐[5′‐trialkylgermyl(silyl)‐2′‐hetarylidene]‐1,3‐dioxane‐4,6‐diones and their analogues

A series of 2,2‐dimethyl‐5‐(5′‐R‐hetarylidene)‐1,3‐dioxane‐4,6‐diones has been synthesized for examing a structure–activity relationship. Furyl and thienyl derivatives of Meldrum's acid possess neurotropic activity comprising both depriming and activating components. Comparison of acute toxicity of carbon, silicon and germanium analogues in the furan series of the compounds has demonstrated that the germanium derivative is 11.5 times less toxic than the carbon analogue and four times less toxic than the silicon derivative. 2,2‐Dimethyl‐5‐(5′‐triethylsilyl‐2′‐thenylidene)‐1,3‐dioxane‐4,6‐dione has moderate toxicity with the highest neurotropic and cytotoxic activity Copyright © 2003 John Wiley & Sons, Ltd.     

2‐{[(4‐Methylphenyl)sulfonyl]amino}phenyl 4‐methylbenzenesulfonate

The title compound, C₂₀H₁₉NO₅S₂, crystallizes as an almost 2:1 mixture of two molecular orientations (described as Orient‐A and Orient‐B). The consequences of these two orientations is the formation of three types of N—H...O hydrogen‐bonded dimers in which the (Orient‐A + Orient‐A) dimers are likely to be the most stable, while the mixed (Orient‐A + Orient‐B) dimers are more frequent. Extra interactions in the form of C—H...O and C—H...π interactions act to further stabilize these dimers and probably allow the less energetically favourable (Orient‐A + Orient‐B) and (Orient‐B + Orient‐B) hydrogen‐bonded dimers to exist by preventing their conversion to (Orient‐A + Orient‐A)‐only hydrogen‐bonded dimers during the crystal‐growth process.     

Mechanism of the Reaction of Amines with 5‐[(Aryl‐ or Alkylamino)hydroxymethylene]‐2,2‐dimethyl‐1,3‐dioxane‐4,6‐diones in the Presence of Chlorotrimethylsilane (Me3SiCl)

Addition of chlorotrimethylsilane (Me₃SiCl) to the mixture of a carbamoyl‐substituted Meldrum's acid, i.e., a 5‐[(arylamino)hydroxymethylene]‐2,2‐dimethyl‐1,3‐dioxane‐4,6‐dione of type 1 and a secondary amine as nucleophile strongly accelerated the rate of their reaction. The reason for this phenomenon observed, during our previous research, remained, however, unclear. To elucidate the mechanism of this reaction, we assumed and verified three possible pathways for the action of Me₃SiCl (cf. Scheme 2): The acceleration of the reaction is caused i) by formation of a O‐trimethylsilylated Meldrum's acid of type 2 , ii) by the silylated amine 3 , or iii) by the presence of HCl liberated from Me₃SiCl. The performed experiments revealed that the faster course of reaction is caused by the formation of N‐trimethylsilylated amines of type 3 .     

(E)‐Methyl 2‐[(2‐fluorophenyl)aminomethylene]‐3‐oxobutanoate: X‐ray and density functional theory (DFT) study

The title compound, C₁₂H₁₂FNO₃, a potential precursor for fluoroquinoline synthesis, is essentially planar, with the most outlying atoms displaced from the best‐plane fit through all non‐H atoms by 0.163 (2) and 0.118 (2) Å. Molecules are arranged in layers oriented parallel to the (011) plane. The arrangement of the molecules in the structure is controlled mainly by electrostatic interactions, as the dipole moment of the molecule is 5.2 D. In addition, the molecules are linked by a weak C—H...O hydrogen bond which gives rise to chains with the base vector [1,1,1]. Electron transfer within the molecule is analysed using natural bond orbital (NBO) analysis. Deviations from the ideal molecular geometry are explained by the concept of non‐equivalent hybrid orbitals.     

Supramolecular structures of 5‐[3‐(4‐methyl­phenyl)‐ and 5‐[3‐(4‐chloro­phenyl)‐2‐propenyl­idene]‐2,2‐di­methyl‐1,3‐dioxane‐4,6‐dione

2,2‐Di­methyl‐5‐[3‐(4‐methyl­phenyl)‐2‐propenyl­idene]‐1,3‐di­ox­ane‐4,6‐dione, C₁₆H₁₆O₄, crystallizes in the triclinic space group , with two mol­ecules in the asymmetric unit. These mol­ecules and a centrosymmetrically related pair, linked together by weak C—H?O hydrogen bonds, form a tetramer. 5‐[3‐(4‐Chloro­phenyl)‐2‐propenyl­idene]‐2,2‐di­methyl‐1,3‐dioxane‐4,6‐dione, C₁₅H₁₃ClO₄, also crystallizes in the triclinic space group , with one mol­ecule in the asymmetric unit. Centrosymmetrically related mol­ecules are linked together by weak C—H?O hydrogen bonds to form dimers which are further linked by yet another pair of centrosymmetrically related C—H?O hydrogen bonds to form a tube which runs parallel to the a axis.     

N‐(X‐Methylphenyl)‐2‐{(Z)‐[(2,3,4‐trimethoxyphenyl)methylidene]amino}‐4,5,6,7‐tetrahydro‐1‐benzothiophene‐3‐carboxamide,where X = 2 and 3

The title isomers, viz. the N‐(3‐methylphenyl)‐, (I), and N‐(2‐methylphenyl)‐, (II), derivatives, both C₂₆H₂₈N₂O₄S, adopt an E configuration that places the thiophene and trimethoxyphenyl groups on opposite sides of the C=N double bond, providing a suitable orientation for formation of an intramolecular N—H...N hydrogen bond. However, while the molecule in (I) is close to being planar, the N‐methylphenyl group in (II) is twisted significantly from the plane of the remainder of the molecule. Both crystal structures are essentially layered and there are no intermolecular N—H...O hydrogen bonds. Compound (I) has a significantly higher calculated density than (II) (1.340 cf 1.305 Mg m⁻³), indicating that the molecular packing in the meta isomer is overall more efficient than that in the ortho isomer.     

3‐(4‐Bromophenyl)‐5‐(4‐dimethylaminophenyl)‐1‐phenyl‐2‐pyrazoline: X‐ray and density functional theory (DFT) studies

In the crystal structure of the title compound, C₂₃H₂₂BrN₃, a strong conjugation of the pyrazoline chromophore with the aromatic rings at positions 1 and 3 is observed, as well as a significant shift in the synclinal→synperiplanar direction. The absolute structure was unequivocally determined. In the absence of clasical hydrogen‐bond donors, the structure is stabilized by weak C—H...π interactions. This paper also reports the electronic structure of the title compound using NBO (natural bond order) analysis. The contributions of lone pairs to the relevant bonds were revealed.     

Ethyl 3‐[1‐(5,5‐dimethyl‐2‐oxo‐1,3,2‐dioxaphosphorin‐2‐yl)propan‐2‐ylidene]carbazate: a combined X‐ray and density functional theory (DFT) study

In the title compound, C₁₁H₂₁N₂O₅P, one of the two carbazate N atoms is involved in the C=N double bond and the H atom of the second N atom is engaged in an intramolecular hydrogen bond with an O atom from the dimethylphosphorin‐2‐yl group, which is in an uncommon cis position with respect to the carbamate group. The cohesion of the crystal structure is also reinforced by weak intermolecular hydrogen bonds. Density functional theory (DFT) calculations at the B3LYP/6‐311++g(2d,2p) level revealed the lowest energy structure to have a Z configuration at the C=N bond, which is consistent with the configuration found in the X‐ray crystal structure, as well as a less stable E counterpart which lies 2.0 kcal mol⁻¹ higher in potential energy. Correlations between the experimental and computational studies are discussed.     

Temperature‐Dependent Behavior of the Dual Fluorescence of 2‐(3‐Fluorophenyl)‐2,3‐dihydro‐1H‐benzo[f]isoindole‐1,3‐dione

The fluorescence behavior of 2‐(3‐fluorophenyl)‐2,3‐dihydro‐1H‐benzo[f]isoindole‐1,3‐dione ( 1 ) was studied in solvents of different polarity and viscosity. Dual luminescence is observed and the short‐wavelength emission is found to increase considerably with the solvent polarity. The ratio of the fluorescence quantum yield of the two states emitting, the one (SW*) at short wavelength and the other (LW*) at long wavelength, shows a bell‐shaped dependence on the reciprocal of the temperature in diethyl ether, butyronitrile, and propane‐1,2,3‐triol triacetate (glycerol triacetate; GTA). This has been interpreted as the result of a reversible interconversion between the two states. The enthalpy difference between the SW* and LW* excited states, as deduced from the slope of the ln (Φ/Φ) vs. 1/T curves in the high temperature range, is found to be solvent polarity and solvent viscosity independent as the same value (−7.3 kJ/mol) is obtained in the three above‐mentioned solvents. The independence from polarity is the consequence of a similar difference in dipole moment between the ground‐state and the SW* and LW* excited states (4.5 and 4.9 D, respectively, derived from solvatochromy). The activation energy of the SW*→LW* step deduced from the low temperature measurements in the nonviscous solvents, increases with solvent polarity (11.6 and 17.5 kJ/mol for diethyl ether and butyronitrile, respectively); they are greater than the viscous‐flow activation energy of the solvents indicating that the resolvation of the excited dipole controls the kinetics. In the nonviscous solvents, the LW* state originates from the SW* state, while in the viscous GTA solution, both states are formed simultaneously within the 1‐ps laser pulse.     

Concomitant polymorphs of 1,3‐bis(3‐fluorophenyl)urea

Hydrogen bonding between urea functionalities is a common structural motif employed in crystal‐engineering studies. Crystallization of 1,3‐bis(3‐fluorophenyl)urea, C₁₃H₁₀F₂N₂O, from many solvents yielded concomitant mixtures of at least two polymorphs. In the monoclinic form, one‐dimensional chains of hydrogen‐bonded urea molecules align in an antiparallel orientation, as is typical of many diphenylureas. In the orthorhombic form, one‐dimensional chains of hydrogen‐bonded urea molecules have a parallel orientation rarely observed in symmetrically substituted diphenylureas.     

2‐(4‐Hydroxy­phenyl)‐4,4‐dimethyl‐2‐oxazoline: X‐ray and density functional theory study

In the crystal structure of the title compound, C₁₁H₁₃NO₂, there are strong inter­molecular O—H⋯N hydrogen bonds which, together with weak intra­molecular C—H⋯O hydrogen bonds, lead to the formation of infinite chains of mol­ecules, held together by weak inter­molecular C—H⋯O hydrogen bonds. A theoretical investigation of the hydrogen bonding, based on density functional theory (DFT) employing periodic boundary conditions, is in agreement with the experimental data. The cluster approach shows that the influence of the crystal field and of hydrogen‐bond formation are responsible for the deformation of the 2‐oxazoline ring, which is not planar and adopts a ⁴T₃ (^C3T_C2) conformation.     

Structural and phenomenological study on the cationic curing of mixtures of epoxy resin and 5,5‐dimethyl‐1,3‐dioxane‐2‐one

Ytterbium and lanthanum triflates were used as initiators to cure a mixture of diglycidylether of bisphenol A (DGEBA) and 5,5‐dimethyl‐1,3‐dioxane‐2‐one (DMTMC). The evolution of the curing was studied by differential scanning calorimetry (DSC) and Fourier transform infrared in the attenuated‐total‐reflection mode (FTIR/ATR). FTIR/ATR was used to monitor the competitive reactive processes and to quantify the evolution of the groups involved in the curing process. We observed the formation of a five‐membered cyclic carbonate, which remains unreacted at the chain ends because of an equilibrium process between the spiroortho carbonates that had formed as intermediate species and also the loss of CO₂, which was quantified by thermogravimetry. The kinetics were studied by DSC and analyzed by isoconversional procedures. Thermogravimetric analysis (TGA) and dynamic mechanical thermal analysis (DMTA) experiments were used to evaluate the properties of the thermosets obtained. The phenomenological changes that take place during curing were studied and represented in a time‐temperature‐transformation (TTT) diagram. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 4546–4558, 2006     

Ab initio and semiempirical computational studies on 1‐{(2E)‐2‐[(aminocarbonothioyl)hydrazono]‐2‐(3‐mesityl‐3‐methylcyclobutyl)ethyl}‐pyrrolidine‐2,5‐dione

The molecular geometry, vibrational frequencies, and gauge including atomic orbital (GIAO) ¹H‐ and ¹³C NMR chemical shift values of the title compound in the ground state have been calculated using the Hartree‐Fock (HF) and density functional theory (DFT) methods with 6‐31G(d) basis sets, and compared with the experimental data. The calculated results show that the optimized geometries can well reproduce the crystal structural parameters and the theoretical vibrational frequencies, and ¹H‐ and ¹³C NMR chemical shift values show good agreement with experimental data. To determine conformational flexibility, the molecular energy profile of the title compound was obtained by semiempirical (AM1) calculations with respect to the selected torsion angle, which was varied from ?180° to +180° in steps of 10°. The energetic behavior of the title compound in solvent media was examined using the B3LYP method with the 6‐31G(d) basis set by applying the Onsager and the polarizable continuum model (PCM). The results obtained with these methods reveal that the PCM method provided more stable structure than Qnsager's method. By using TD‐DFT method, electronic absorption spectra of the title compound have been predicted and a good agreement with the TD‐DFT method and the experimental one is determined. The predicted nonlinear optical properties of the title compound are much greater than ones of urea. In addition, the molecular electrostatic potential (MEP), frontier molecular orbitals (FMO) analysis, NBO analysis and thermodynamic properties of the title compound were investigated using theoretical calculations. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

10‐(4‐Fluorophenyl)‐3,3,6,6,9‐pentamethyl‐3,4,6,7,9,10‐hexahydroacridine‐1,8(2H,5H)‐dione and 10‐(4‐fluorophenyl)‐3,3,6,6‐tetramethyl‐9‐­propyl‐3,4,6,7,9,10‐hexahydroacridine‐1,8(2H,5H)‐dione

10‐(4‐Fluoro­phenyl)‐3,3,6,6,9‐penta­methyl‐3,4,6,7,9,10‐hexa­hydro­acridine‐1,8(2H,5H)‐dione, C₂₄H₂₈FNO₂, (I), crystallizes with two crystallographically independent mol­ecules (which differ slightly in conformation), while 10‐(4‐fluoro­phenyl)‐9‐propyl‐3,3,6,6‐tetra­methyl‐3,4,6,7,9,10‐hexa­hydro­acridine‐1,8(2H,5H)‐dione, C₂₆H₃₂FNO₂, (II), crystallizes with one mol­ecule per asymmetric unit. In both structures, the central ring in the acridine moiety is in a sofa conformation, while the outer rings adopt intermediate half‐chair/sofa conformations. The central pyridine ring is orthogonal to the substituted phenyl ring. In both structures, the packing of the crystal is stabilized by C—H?O intermolecular hydrogen bonds.     

(E)‐Methyl 2‐anilinomethylene‐3‐oxobutanoate: X‐ray and density functional theory studies

Molecules of the title compound, C₁₂H₁₃NO₃, are not planar and are stabilized by electrostatic interactions, as the dipole moment of the molecule is 3.76 D. They are also stabilized by intramolecular hydrogen bonds of N...O and C...O types, and by a complicated network of weak intermolecular hydrogen bonds of the C...O type. This paper also reports the theoretical investigation of the hydrogen bonding and electronic structure of the title compound using natural bond orbital (NBO) analysis.     

X‐ray structure and density functional theory studies of an unexpected product: trans‐bis{2‐[(2‐cyanoethyl)iminomethyl]phenolato}copper(II)

The title compound, [Cu(C₁₀H₉N₂O)₂] or [Cu^II(CYMB)₂], (I), was obtained in an attempt to reduce trans‐bis(2‐{[3,5‐bis(trifluoromethyl)phenyl]iminomethyl}phenolato)copper(II), [Cu(TIMB)₂], (II), with bis(pentamethylcyclopentadienyl)cobalt(II) [decamethylcobaltocene, Cp*₂Co, (III)]. The molecular structure of (I) has the Cu^II centre located on an inversion centre of the C2/c space group. A density functional theory (DFT) analysis at the B3LYP/Lanl2dz(CuF);6‐31G**(CHNO) level performed in order to optimize the structures of the free ligands CYMB⁻ and TIMB⁻, and the metal complexes [Cu^I/II(CYMB)₂]^−/0 and [Cu^I/II(TIMB)₂]^−/0, reproduced well the X‐ray diffraction structure and allowed us to infer the insertion of the cyanomethide anion on the 3,5‐bis(trifluoromethyl)phenyl system from an evaluation of the Mulliken atomic charges and the electronic energies.     

NMR and X‐ray structural studies on 3‐benzyl‐8‐bromoadenine

8‐Bromoadenine was benzylated in the presence of base to give a mixture of two regioisomers. One was easily recognized as 9‐benzyl‐8‐bromoadenine, but the other structure could not be determined with absolute certainty by NMR. Therefore, X‐ray crystallography was used to prove that the benzyl group was attached to N‐3. Furthermore, it is shown that the 3‐benzyl adenine derivative exists as the amine tautomer both in the crystalline state as well as in solution (DMSO‐d₆), with restricted rotation around the N⁶? C6 bond. J. Heterocyclic Chem., (2011).     

Luminescence characteristics and X‐ray crystal structure of [Cd(bipy)3][PF6]2 (bipy = 2,2′‐bipyridine)

The photoluminescence characteristics of the [Cd(bipy)₃][PF₆]₂ complex are reported. A moderately large quantum yield (φ) of 1.07 × 10^?2 is exhibited in acetonitrile solution at 298 K. Crystallography shows the dication to have a distorted octahedral geometry and the crystal structure to be stabilized by C? H···π and C? H···F interactions. Copyright © 2005 John Wiley & Sons, Ltd.     

2,2‐Dimethyl‐5‐nitroso‐1,3‐dioxan‐5‐yl benzoate, 2,2‐dimethyl‐5‐nitroso‐1,3‐dioxan‐5‐yl 4‐chlorobenzoate and 5‐nitroso‐1,3‐dioxan‐5‐yl 4‐chlorobenzoate

The crystal structures of 2,2‐dimethyl‐5‐nitroso‐1,3‐dioxan‐5‐yl benzoate, C₁₃H₁₅NO₅, (I), 2,2‐dimethyl‐5‐nitroso‐1,3‐dioxan‐5‐yl 4‐chlorobenzoate, C₁₃H₁₄ClNO₅, (II), and 5‐nitroso‐1,3‐dioxan‐5‐yl 4‐chlorobenzoate, C₁₁H₁₁NO₅, (III), have been determined in order to gain insight into the conformational preference of α‐benzoyloxynitroso. Unfavourable 1,3‐diaxial interactions force (I) and (II) to crystallize in the 2,5 twist‐boat conformation, whereas compound (III), lacking this destabilizing interaction, crystallizes in the chair conformation.