An ice‐like water hexamer with symmetry in the hydrogen‐bonded structure of 2,3,5,6‐tetrafluoro‐1,4‐bis(imidazol‐1‐ylmethyl)benzene dihydrate

An ice‐like hexameric water cluster, stabilized by the flexible bis‐imidazolyl compound 2,3,5,6‐tetrafluoro‐1,4‐bis(imidazol‐1‐ylmethyl)benzene (Fbix), is found in the trigonal R crystal structure of the title compound, C₁₄H₁₀F₄N₄·2H₂O or Fbix·2H₂O. The Fbix molecule lies about an inversion centre with one water molecule in the asymmetric unit in a general position. A cyclic chair‐like hexameric water cluster with symmetry is generated with a hydrogen‐bonded O...O distance within the hexamer of 2.786 (3) Å. The Fbix molecule adopts a trans conformation, where the imidazole ring makes a dihedral angle of 70.24 (11)° with the central tetrafluorinated aromatic ring. Each water hexamer is connected by six Fbix molecules through intermolecular O—H...N hydrogen bonds [N...O = 2.868 (3) Å] to yield a three‐dimensional supramolecular network with primitive cubic (pcu) topology. Large voids in each single pcu network lead to fourfold interpenetrated aggregates of Fbix·2H₂O.     

A novel three‐dimensional framework constructed by 2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole and infinite chains of hydrogen‐bonded water molecules

A novel three‐dimensional framework of 2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole dihydrate, C₁₁H₁₀N₄·2H₂O or L·2H₂O, (I), in which L acts as both hydrogen‐bond acceptor and donor in the supramolecular construction with water, has been obtained by self‐assembly reaction of L with H₂O. The two independent water molecules are hydrogen bonded alternately with each other to form a one‐dimensional infinite zigzag water chain. These water chains are linked by the benzimidazole molecules into a three‐dimensional framework, in which each organic molecule is hydrogen bonded by three water molecules. This study shows that the diversity of hydrogen‐bonded patterns plays a crucial role in the formation of the three‐dimensional framework. More significantly, as water molecules are important in contributing to the conformation, stability, function and dynamics of biomacromolecules, the infinite chains of hydrogen‐bonded water molecules seen in (I) may be a useful model for water in other chemical and biological processes.     

The zwitterionic structure of 2‐hydroxy‐4‐[(2‐hydroxybenzylidene)amino]benzoic acid

The title compound, C₁₄H₁₁NO₄, exists in the solid phase in the zwitterionic form, 2‐{[(4‐carboxy‐3‐hydroxyphenyl)iminiumyl]methyl}phenolate, with the H atom from the phenol group on the 2‐hydroxybenzylidene ring transferred to the imine N atom, resulting in a strong intramolecular N—H...O hydrogen bond between the iminium H atom and the phenolate O atom, forming a six‐membered hydrogen‐bonded ring. In addition, there is an intramolecular O—H...O hydrogen bond between the carboxylic acid group and the adjacent hydroxy group of the other ring, and an intermolecular C—H...O contact involving the phenol group and the C—H group adjacent to the imine bond, connecting the molecules into a two‐dimensional network in the (10) plane. π–π stacking interactions result in a three‐dimensional network. This study is important because it provides crystallographic evidence, supported by IR data, for the iminium zwitterionic form of Schiff bases.<!?tpb=12pt>     

rac‐1‐[(2‐Methoxyethyl)sulfanyl]‐2‐[(2‐methoxyethyl)sulfinyl]benzene and its PdCl2 complex

As an extension of recent findings on the recovery of palladium with dithioether extractants, single crystals of the chelating vicinal thioether sulfoxide ligand rac‐1‐[(2‐methoxyethyl)sulfanyl]‐2‐[(2‐methoxyethyl)sulfinyl]benzene, C₁₂H₁₈O₃S₂, (I), and its square‐planar dichloridopalladium complex, rac‐dichlorido{1‐[(2‐methoxyethyl)sulfanyl]‐2‐[(2‐methoxyethyl)sulfinyl]benzene‐κ²S,S′}palladium(II), [PdCl₂(C₁₂H₁₈O₃S₂)], (II), have been synthesized and their structures analysed. The molecular structure of (II) is the first ever characterized involving a dihalogenide–Pd^II complex in which the palladium is bonded to both a thioether and a sulfoxide functional group. The structural and stereochemical characteristics of the ligand are compared with those of the analogous dithioether compound [Traeger et al. (2012). Eur. J. Inorg. Chem. pp. 2341–2352]. The sulfinyl O atom suppresses the electron‐pushing and mesomeric effect of the S—C...;C—S unit in ligand (I), resulting in bond lengths significantly different than in the dithioether reference compound. In contrast, in complex (II), those bond lengths are nearly the same as in the analogous dithioether complex. As observed previously, there is an interaction between the central Pd^II atom and the O atom that is situated above the plane.     

Ethyl 2‐methoxy‐6‐[(triphenylphosphoranylidene)amino]nicotinate and ethyl 2‐methylsulfanyl‐6‐[(triphenylphosphoranylidene)amino]nicotinate

The molecules of ethyl 2‐methoxy‐6‐[(triphenylphosphoranylidene)amino]nicotinate, C₂₇H₂₅N₂O₃P, (I), and ethyl 2‐methylsulfanyl‐6‐[(triphenylphosphoranylidene)amino]nicotinate, C₂₇H₂₅N₂O₂PS, (II), have almost identical bond lengths and molecular conformations, and both show evidence for polarized electronic structures. However, the crystal structures, as illustrated by the weak hydrogen bonds linking the molecules, are significantly different. The significance of this study lies in the observation that two compounds which are almost identical in constitution, configuration and conformation nonetheless adopt different crystal structures.     

A three‐dimensional hydrogen‐bonded network in bis(4‐hydroxyanilinium) selenate(VI) dihydrate

The title compound, 2C₆H₈NO⁺·SeO₄²⁻·2H₂O, contains 4‐hydroxyanilinium cations, selenate(VI) anions and water molecules. One of the two independent cations is nearly planar (excluding the ammonium H atoms), while the other is markedly nonplanar, with the hydroxy and ammonium groups displaced from the plane of the benzene ring. This results from the antiparallel orientation of the cations, which interact through oppositely polarized ammonium and hydroxy groups. Ionic and hydrogen‐bonding interactions join the oppositely charged units into a three‐dimensional network. This work demonstrates the usefulness of 4‐aminophenol in the crystal engineering of organic–inorganic hybrid compounds.     

2‐Amino‐3‐methyl‐6‐[methyl(phenyl)amino]‐5‐nitropyrimidin‐4(3H)‐one: polarized molecules within hydrogen‐bonded sheets

The pyrimidinone ring in the title compound, C₁₂H₁₃N₅O₃, is effectively planar, despite the presence of five substituents. The bond distances provide evidence for significant polarization of the electronic structure, with charge separation, and the molecules are linked into sheets by a combination of N—H...O and N—H...π(arene) hydrogen bonds. Comparisons are made with the molecular and supramolecular structures of the precursor compound 2‐amino‐6‐[methyl(phenyl)amino]‐5‐nitropyrimidin‐4(3H)‐one.     

A hydrogen‐bonded dimer of 13‐hydroxy‐13‐[(triisopropyl­silyl)­ethynyl]penta­cen‐6(13H)‐one

The title compound, C₃₃H₃₄O₂Si, has been obtained as a product in the synthesis of 6,13‐bis­[(triisopropyl­silyl)ethynyl]‐6,13‐dihydro­penta­cene‐6,13‐diol. The solid‐state structure reveals a dimer, with strong hydrogen bonds holding the two mol­ecules in a face‐to‐face arrangement [O⋯O = 2.746 (2) Å and O—H⋯O = 173 (2)°]. Within each dimer, the penta­cene units are π‐stacked (the distance between the mean least‐squares planes of 22 C atoms is 3.60 Å).     

3‐[(2‐Oxo‐1‐naphthylidene)methyl­amino]­benzoic acid

The title compound, C₁₈H₁₃NO₃, exists as a keto­amino tautomer implying a fairly short N—H?O intramolecular hydrogen bond between the 2‐naphthalenone and amino moieties [N?O 2.531 (3) Å] which is enhanced by the π‐electron delocalization effect. The naphthald­imine and 3‐carboxy­phenyl fragments are inclined at an angle of 4.41 (7)°, so the mol­ecule is almost planar. The mol­ecules are connected by intermolecular O—H?O hydrogen bonds between the carboxy and keto O atoms, forming infinite chains around the twofold screw axes parallel to b .     

Synthesis,structure and cytotoxicity of new 2‐[(3‐aminopropyl)dimethylsilyl]‐5‐furfural diethylacetals and 2‐[(3‐aminopropyl)dimethylsilyl]‐5‐phenylfurans

Novel 2‐[(3‐aminopropyl)dimethylsilyl]‐5‐furfural diethylacetals and 2‐[(3‐aminopropyl)di‐methylsilyl]‐5‐phenylfurans have been synthesized by a hydrosilylation reaction of aliphatic and heterocyclic N‐allylamines in the presence of the Speier's catalyst. The effects of the structure of the amine and nature of organic substituent at the furan ring on the cytotoxicity of the new compounds have been studied. Copyright © 2013 John Wiley & Sons, Ltd.     

A new polymorph of 1,4‐bis(imidazol‐1‐ylmethyl)benzene dihydrate and its hydrogen‐bonded fivefold interpenetrated CdSO4 network

Single crystals of a new polymorph of 1,4‐bis(imidazol‐1‐ylmethyl)benzene dihydrate (bix·2H₂O), C₁₄H₁₄N₄·2H₂O, have been obtained by the hydrothermal method. The asymmetric unit is composed of two independent half‐bix molecules, one on an inversion center and one on a twofold axial site, and two water molecules. The disordered water molecules link into discrete tetrameric water units via two O—H...O hydrogen bonds, forming planar R₄⁴(8) rings. These tetrameric water units and bix molecules are further linked by two O—H...N hydrogen bonds into a three‐dimensional network in which an (106) hydrogen‐bonded ring is observed. These large rings lead to the formation of a fivefold interpenetrated network. If both the tetrameric water units and the bix molecules can be regarded as connected nodes, one single three‐dimensional net can then be rationalized as a CdSO₄ network. This study indicates that topological methodology can be applied in some cases in order to understand the inherent characteristics of some hydrogen‐bonded supramolecular assemblies.     

Three‐dimensional hydrogen‐bonded framework structures in flunarizinium nicotinate and flunarizinediium bis(4‐toluenesulfonate) dihydrate

The structures of two salts of flunarizine, namely 1‐bis[(4‐fluorophenyl)methyl]‐4‐[(2E)‐3‐phenylprop‐2‐en‐1‐yl]piperazine, C₂₆H₂₆F₂N₂, are reported. In flunarizinium nicotinate {systematic name: 4‐bis[(4‐fluorophenyl)methyl]‐1‐[(2E)‐3‐phenylprop‐2‐en‐1‐yl]piperazin‐1‐ium pyridine‐3‐carboxylate}, C₂₆H₂₇F₂N₂⁺·C₆H₄NO₂⁻, (I), the two ionic components are linked by a short charge‐assisted N—H...O hydrogen bond. The ion pairs are linked into a three‐dimensional framework structure by three independent C—H...O hydrogen bonds, augmented by C—H...π(arene) hydrogen bonds and an aromatic π–π stacking interaction. In flunarizinediium bis(4‐toluenesulfonate) dihydrate {systematic name: 1‐[bis(4‐fluorophenyl)methyl]‐4‐[(2E)‐3‐phenylprop‐2‐en‐1‐yl]piperazine‐1,4‐diium bis(4‐methylbenzenesulfonate) dihydrate}, C₂₆H₂₈F₂N₂²⁺·2C₇H₇O₃S⁻·2H₂O, (II), one of the anions is disordered over two sites with occupancies of 0.832 (6) and 0.168 (6). The five independent components are linked into ribbons by two independent N—H...O hydrogen bonds and four independent O—H...O hydrogen bonds, and these ribbons are linked to form a three‐dimensional framework by two independent C—H...O hydrogen bonds, but C—H...π(arene) hydrogen bonds and aromatic π–π stacking interactions are absent from the structure of (II). Comparisons are made with some related structures.     

(Z)‐5‐[(5‐Methyl‐1H‐imidazol‐4‐yl)methylidene]‐2‐sulfanylidene‐1,3‐thiazolidin‐4‐one monohydrate: a three‐dimensional hydrogen‐bonded framework structure

The non‐H atoms in the organic component of the title compound, C₈H₇N₃OS₂·H₂O, are almost coplanar, as the dihedral angle between the two ring planes is only 1.8 (2)°; there is a wide C—C—C angle of 127.8 (3)° at the methine C atom linking the two rings. The molecular components are linked into a three‐dimensional framework structure by two‐centre hydrogen bonds of N—H...O and O—H...N types, together with a three‐centre O—H...(N,S) system. Comparisons are made with some (Z)‐5‐arylmethylidene‐2‐sulfanylidene‐1,3‐thiazolidin‐4‐ones.     

Hydrogen‐bonding controls the solid‐state and enantiomeric comformations of the amino alcohol ligand 2‐[(2‐hydroxyethyl)amino]cyclohexanol

The crystal structure of the title compound, C₈H₁₇NO₂, consists of (R,R) and (S,S) enantiomeric pairs packed in adjacent double layers which are characterized by centrosymmetric hydrogen‐bonded dimers, generated via N—H...O and O—H...O interactions, respectively. Intermolecular interactions, related to acceptor and donor molecule chirality, link the achiral double layers into tubular columns, which consist of a staggered hydrophilic inner core surrounded by a hydrophobic cycloalkyl outer surface and extend in the [011] direction.     

2‐Amino‐4‐chloro‐5‐formyl‐6‐[methyl(2‐methylphenyl)amino]pyrimidine and 2‐amino‐4‐chloro‐5‐formyl‐6‐[(2‐methoxyphenyl)methylamino]pyrimidine are isostructural and form hydrogen‐bonded sheets of R22(8) and R66(32) rings

2‐Amino‐4‐chloro‐5‐formyl‐6‐[methyl(2‐methylphenyl)amino]pyrimidine, C₁₃H₁₃ClN₄O, (I), and 2‐amino‐4‐chloro‐5‐formyl‐6‐[(2‐methoxyphenyl)methylamino]pyrimidine, C₁₃H₁₃ClN₄O₂, (II), are isostructural and essentially isomorphous. Although the pyrimidine rings in each compound are planar, the ring‐substituent atoms show significant displacements from this plane, and the bond distances provide evidence for polarization of the electronic structures. In each compound, a combination of N—H...N and N—H...O hydrogen bonds links the molecules into sheets built from centrosymmetric R₂²(8) and R₆⁶(32) rings. The significance of this study lies in its observation of the isostructural nature of (I) and (II), and in the comparison of their crystal and molecular structures with those of analogous compounds.     

N‐Acetyl‐4‐[(2‐hydroxy­benzyl­idene)amino]benzene­sulfonamide mono­hydrate and N‐acetyl‐4‐[(5‐bromo‐2‐hydroxy­benzyl­idene)amino]benzene­sulfonamide monohydrate

Mol­ecules of the title compounds, C₁₅H₁₄N₂O₄S·H₂O and C₁₅H₁₃BrN₂O₄S·H₂O, adopt an E configuration about the azomethine C=N double bond. In both mol­ecules, the two benzene rings and the azomethine group are practically coplanar, as a result of intra­molecular hydrogen bonds involving the hydroxy O atom and azomethine N atom. The angular disposition of the bonds about the S atom deviates significantly from that of a regular tetra­hedron. In the crystal structures, both compounds form two‐dimensional layers parallel to the (100) plane.     

Pseudo‐crown ether‐like structure by hydrogen‐bonded dimerization: A water complex with bis(2′‐hydroxyethyl) 2,6‐pyridinedicarboxylate in solid,solution, and gas phases

Dedicated to Professor Jerald S. Bradshaw Bis(2′‐hydroxyethyl) 2,6‐pyridinedicarboxylate (1) was prepared and the structure was characterized in solid (fourier transform‐ir and X‐ray analyses), in liquid (¹H and ¹³C nmr titrations), and in the gas‐phase (fast atom bombardment (fab) and electron spray ionization (esi) ms). Two bis(2′‐hydroxyethyl) 2,6‐pyridinedicarboxylate molecules each with an included water molecule are bound together through hydrogen bonding to give a pseudo‐macrocycle in the solid state and in chloroform solution. The fab and esi mass spectra also suggested that ligand 1 forms a dimer in the gas‐phase.     

Tris(2,2′‐bipyridine)iron(II) bis(1,1,3,3‐tetracyano‐2‐ethoxypropenide) dihydrate: chiral hydrogen‐bonded frameworks interpenetrate in three dimensions

In the title compound, [Fe(C₁₀H₈N₂)₃](C₉H₅N₄O)₂·2H₂O, the chiral cations lie across twofold rotation axes in the space group C2/c. The anions and the water molecules are linked by two independent O—H...N hydrogen bonds to form C₂²(8) chains, and these chains are linked by the cations via C—H...N and C—H...O hydrogen bonds to form two interpenetrating three‐dimensional frameworks, each of which contains only one enantiomeric form of the chiral cation.     

2‐[(4‐Hydroxyphenyl)iminomethyl]­thiophene

The molecular structure of the title compound, C₁₁H₉NOS, has three planar moieties, two of which are rings, namely the hydroxy­phenyl and the thio­phene, with an angle of 20.76 (10)° between them. The crystal structure is stabilized by an O—H?N hydrogen bond and by C—H?O intermolecular interactions. The C?O intermolecular contact distance is 3.443 (2) Å.     

2,2′‐[(Disulfanediyl)bis{5‐[(1E)‐(2‐hydroxybenzylidene)amino]‐1,3‐thiazole‐4,2‐diyl}]diphenol: synthesis,crystal structure and calculation of molecular hyperpolarizability

The title Schiff base compound {systematic name: 2‐[5‐[(E )‐(2‐hydroxybenzylidene)amino]‐4‐(2‐{5‐[(E )‐(2‐hydroxybenzylidene)amino]‐2‐(2‐hydroxyphenyl)‐1,3‐thiazol‐4‐yl}disulfanyl)‐1,3‐thiazol‐2‐yl]phenol}, C₃₂H₂₂N₄O₄S₄, incorporating a disulfanediyl (dithio) linkage, was obtained from the condensation reaction between two equivalents of salicylaldehyde and one equivalent of dithiooxamide in dimethylformamide, and was characterized by elemental analysis, IR spectroscopic analysis and single‐crystal X‐ray diffraction. A one‐dimensional chain is formed along the b axis via double intermolecular C—H…S hydrogen bonds. The HOMO (highest occupied molecular orbital) and LUMO (lowest unoccupied molecular orbital) energies and some related molecular parameters were calculated at the B3LYP/6‐311G(d,p) level of theory. The molecular hyperpolarizability was also calculated.