The first 3′:5′‐cyclic nucleotide–amino acid complex: l‐His–cIMP

In the crystal structure of the l ‐His–cIMP complex, i.e.l ‐histidinium inosine 3′:5′‐cyclic phosphate [systematic name: 5‐(2‐amino‐2‐carboxyethyl)‐1H‐imidazol‐3‐ium 7‐hydroxy‐2‐oxo‐6‐(6‐oxo‐6,9‐dihydro‐1H‐purin‐9‐yl)‐4a,6,7,7a‐tetrahydro‐4H‐1,3,5,2λ⁵‐furo[3,2‐d][1,3,2λ⁵]dioxaphosphinin‐2‐olate], C₆H₁₀N₃O₂⁺·C₁₀H₁₀N₄O₇P⁻, the Hoogsteen edge of the hypoxanthine (Hyp) base of cIMP and the Hyp face are engaged in specific amino acid–nucleotide (His...cIMP) recognition, i.e. by abutting edge‐to‐edge and by π–π stacking, respectively. The Watson–Crick edge of Hyp and the cIMP phosphate group play a role in nonspecific His...cIMP contacts. The interactions between the cIMP anions (anti/C3′–endo/trans–gauche/chair conformers) are realized mainly between riboses and phosphate groups. The results for this l ‐His–cIMP complex, compared with those for the previously reported solvated l ‐His–IMP crystal structure, indicate a different nature of amino acid–nucleotide recognition and interactions upon the 3′:5′‐cyclization of the nucleotide phosphate group.     

复合物HNO···H2O2内N-H···O蓝移氢键的理论研究

A theoretical study on the blue-shifted H-bond N-H…O and red-shifted H-bond O-H…O in the complexHNO…H_2O_2 was conducted by employment of both standard and counterpoise-corrected methods to calculate thegeometric structures and vibrational frequencies at the MP2/6-31G(d),MP2/6-31 G(d,p),MP2/6-311 q G(d,p),B3LYP/6-31G(d),B3LYP/6-31 G(d,p) and B3LYP/6-311 G(d,p) levels.In the H-bond N-H…O,the calcu-lated blue shift of N-H stretching frequency is in the vicinity of 120 cm~(-1) and this is indeed the largest theoreticalestimate of a blue shift in the X-H…Y H-bond ever reported in the literature.From the natural bond orbital analy-sis,the red-shifted H-bond O-H…O can be explained on the basis of the dominant role of the hyperconjugation.For the blue-shifted H-bond N-H…O,the hyperconjugation was inhibited due to the existence of significant elec-tron density redistribution effect,and the large blue shift of the N-H stretching frequency was prominently due tothe rehybridization of sp~n N-H hybrid orbital.     

Strong hydrogen‐bonded amino acid dimers in l‐alanine alaninium nitrate

The title compound, C₃H₇NO₂·C₃H₈NO₂⁺·NO₃^?, contains l ‐alanine–alaninium dimers bonded via the carboxyl groups by a strong asymmetric hydrogen bond with an O?O distance of 2.4547 (19) Å. The neutral alanine mol­ecule exists as a zwitterion, where the carboxyl group is dissociated and the amino group is protonated. The alaninium cation has both groups in their acidic form. The alanine mol­ecule and the alaninium cation differ only slightly in their conformation, having an N—C_α—C=O torsion angle close to ?25°. The dimers and the nitrate anion are joined through a three‐dimensional hydrogen‐bond network, in which the full hydrogen‐bonding capabilities of the amino groups of the two alanine moieties are realised.     

Penkvilksite‐2O: Na2TiSi4O11·2H2O

The crystal structure of synthetic penkvilksite‐2O, disodium titanium tetrasilicate dihydrate, Na₂TiSi₄O₁₁·2H₂O, a microporous titanosilicate, confirms the major features of a previous model that had been obtained by order–disorder (OD) theory from the known structure of penkvilksite‐1M. An important difference from the previous model involves the hydrogen bonding of the water molecule which, on the basis of a Raman spectrum and the finding of only one of the two H atoms, is proposed to be disordered about a fixed O–H direction. The structure of penkvilksite‐2O is based on (100) silicate layers linked by isolated TiO₆ octahedra to form a heteropolyhedral framework. The layer is strongly corrugated, based on interlaced spiral chains, and is crossed by two different channels that have an effective channel width of about 3 Å.     

l‐Me­thionyl‐l‐alanine–2‐propanol (1/2)

The crystal structure of the title compound, C₈H₁₆N₂O₃S·2C₃H₈O, is divided into hydro­phobic and hydro­philic layers. Two peptide mol­ecules in the asymmetric unit are related by pseudo‐translational symmetry along the a axis, as are two of the four 2‐propanol mol­ecules. The last two 2‐propanol mol­ecules in the asymmetric unit have different relative orientations and hydrogen‐bond interactions.     

CoCl_2·6H_2O or LaCl_3·7H_2O Catalyzed Biginelli Reaction. One-Pot Synthesis of 3,4-Dihydropyrimidin-2(1 H)-ones

Ｉｎｔｒｏｄｕｃｔｉｏｎ1,4 Ｄｉｈｙｄｒｏｐｙｒｉｄｉｎｅｓｏｆｔｈｅｎｉｆｅｄｉｐｉｎｅｔｙｐｅ (ｅ .ｇ .Ｉ—ＩＩＩ)ａｒｅｔｈｅｍｏｓｔｓｔｕｄｉｅｄｃｌａｓｓｏｆｏｒｇａｎｉｃｃａｌｃｉｕｍｃｈａｎｎｅｌｍｅｄｉｃｉｎｅ ,ｗｈｉｃｈｈａｖｅｂｅｃｏｍｅａｌｍｏｓｔｉｎｄｉｓｐｅｎｓ ａｂｌｅｆｏｒｔｈｅｔｒｅａｔｍｅｎｔｏｆｃａｒｄｉｏｖａｓｃｕｌａｒｄｉｓｅａｓｅｓｓｕｃｈａｓｈｙｐｅｒｔｅｎｓｉｏｎ ,ｃａｒｄｉａｃａｒｒｈｙｔｈｍｉａｓ ,ｏｒａｎｇｉｎａ .1Ｉｎｔｈｅｐａｓｔｄｅｃａｄｅ…     

Das Lanthan‐Dodekahydro‐closo‐Dodekaborat‐Hydrat [La(H2O)9]2[B12H12]3·15 H2O und sein Oxonium‐Chlorid‐Derivat [La(H2O)9](H3O)Cl2[B12H12]·H2O

The Lanthanum Dodecahydro‐closo‐Dodecaborate Hydrate [La(H₂O)₉]₂[B₁₂H₁₂]₃·15 H₂O and its Oxonium‐Chloride Derivative [La(H₂O)₉](H₃O)Cl₂[B₁₂H₁₂]·H₂O By neutralization of an aqueous solution of the free acid (H₃O)₂[B₁₂H₁₂] with basic La₂O₃ and after isothermic evaporation colourless, face‐rich single crystals of a water‐rich lanthanum(III) dodecahydro‐closo‐dodecaborate hydrate [La(H₂O)₉]₂[B₁₂H₁₂]₃·15 H₂O are isolated. The compound crystallizes in the trigonal system with the centrosymmetric space group (a = 1189.95(2), c = 7313.27(9) pm, c/a = 6.146; Z = 6; measuring temperature: 100 K). The crystal structure of [La(H₂O)₉]₂[B₁₂H₁₂]₃·15 H₂O can be characterized by two of each other independent, one into another posed motives of lattice components. The [B₁₂H₁₂]²⁻ anions (d(B–B) = 177–179 pm; d(B–H) = 105–116 pm) are arranged according to the samarium structure, while the La³⁺ cations are arranged according to the copper structure. The lanthanum cations are coordinated in first sphere by nine oxygen atoms from water molecules in form of a threecapped trigonal prism (d(La–O) = 251–262 pm). A coordinative influence of the [B₁₂H₁₂]²⁻ anions on La³⁺ has not been determined. Since “zeolitic” water of hydratation is also present, obviously the classical H–O^δ–···^+δH–O‐hydrogen bonds play a significant role in the stabilization of the crystal structure. During the conversion of an aqueous solution of (H₃O)₂[B₁₂H₁₂] with lanthanum trichloride an anion‐mixed salt with the composition [La(H₂O)₉](H₃O)Cl₂[B₁₂H₁₂]·H₂O is obtained. The compound crystallizes in the hexagonal system with the non‐centrosymmetric space group (a = 808.84(3), c = 2064.51(8) pm, c/a = 2.552; Z = 2; measuring temperature: 293 K). The crystal structure can be characterized as a layer‐like structure, in which [B₁₂H₁₂]²⁻ anions and H₃O⁺ cations alternate with layers of [La(H₂O)₉]³⁺ cations (d(La–O) = 252–260 pm) and Cl⁻ anions along [001]. The [B₁₂H₁₂]²⁻ (d(B–B) = 176–179 pm; d(B–H) = 104–113 pm) and Cl⁻ anions exhibit no coordinative influence on La³⁺. Hydrogen bonds are formed between the H₃O⁺ cations and [B₁₂H₁₂]²⁻ anions, also between the water molecules of [La(H₂O)₉]³⁺ and Cl⁻ anions, which contribute to the stabilization of the crystal structure.     

KZn(HP2O7)·2H2O and KMn(HP2O7)·2H2O: acid pyrophosphate metallates(II) with layer structures

The crystal structures of the isomorphous title compounds, namely potassium zinc hydrogen pyrophosphate dihydrate and potassium manganese hydrogen pyrophosphate dihydrate, consist of acidic pyrophosphate–metallate(II) layers joined by K⁺ ions and hydrogen‐bridging bonds. The Zn²⁺/Mn²⁺ ions are octahedrally surrounded by four pyrophosphate O atoms and by two water mol­ecules. The (HP₂O₇)^3? anions exhibit eclipsed conformations. The metal ions and water O atoms lie on mirror planes, as does the central O atom of the (HP₂O₇)^3? anion.     

Theoretical study of the amino acid interactions in the binding region of the trypsin–pancreatic trypsin inhibitor complex

The meaningful interactions in the contact region of the trypsin–pancreatic trypsin inhibitor complex have been evaluated using free energy simulation methods and appropriate thermodynamic cycles. Consequently, mutations on a few selected residues were performed to destroy the specificity of these interactions preserving the three-dimensional structure of the original species; therefore, the original and mutated residues involved had to be similar from a topological point of view but with opposite chemical properties. The thermodynamic perturbation, conventional thermodynamic integration, thermodynamic integration with end-point perturbational correction and thermodynamic integration conjugated with the extrapolation method of Brooks formalisms have been used in these calculations. The results obtained, with these four alternative approaches, are in reasonable, mutual agreement and reveal that the strength of a specific interaction increases with the charge separation between the amino acid residues involved, and with the hydrophilicity of the surrounding environment.     

N‐(l‐2‐Aminobutyryl)‐l‐alanine and 2‐(l‐alanylamino)‐l‐butyric acid 0.33‐hydrate

The crystal structure of N‐(l ‐2‐amino­butyryl)‐l ‐alanine, C₇H₁₄N₂O₃, is closely related to the structure of l ‐alanyl‐l ‐alanine, both being tetragonal, while the retro‐analogue 2‐(l ‐alanyl­amino)‐l ‐butyric acid 0.33‐hydrate, C₇H₁₄N₂O₃·­0.33H₂O, forms a new type of molecular columnar structure with three peptide mol­ecules in the asymmetric unit.     

Kristallstruktur von Natrium‐Dihydrogencyamelurat‐Tetrahydrat Na[H2(C6N7)O3] · 4 H2O

Crystal Structure of Sodium Dihydrogencyamelurate Tetrahydrate Na[H₂(C₆N₇)O₃] · 4 H₂O Sodium dihydrogencyamelurate‐tetrahydrate Na[H₂(C₆N₇)O₃]·4 H₂O was obtained by neutralisation of an aqueous solution, previously prepared by hydrolysis of the polymer melon with sodium hydroxide. The crystal structure was solved by single‐crystal X‐ray diffraction ( a = 6.6345(13), b = 8.7107(17), c = 11.632(2) Å, α = 68.96(3), β = 87.57(3), γ = 68.24(3)°, V = 579.5(2) ų, Z = 2, R1 = 0.0535, 2095 observed reflections, 230 parameters). Both hydrogen atoms of the dihydrogencyamelurate anion are directly bound to nitrogen atoms of the cyameluric nucleus, thus proving the preference of the keto‐tautomere in salts of cyameluric acid in the solid‐state. The compound forms a layer‐like structure with an extensive hydrogen bonding network.     

[Cu{C2(COO)2}(H2O)3]·H2O,the first copper complex of acetyl­ene­dicarboxyl­ic acid

In the title compound, catena‐poly­[[[tri­aqua­copper(II)]‐μ‐acetyl­enedi­carboxyl­ato‐κ²O:O′′] hydrate], {[Cu(C₄O₄)(H₂O)₃]·H₂O}_n, the Cu^II ion is coordinated by two monodentate carboxyl­ate groups in trans positions and three water mol­ecules, thus forming a fivefold coordination polyhedron that can be described as a distorted square pyramid. All atoms are located on general sites. The polyhedra are connected by bifunctional acetyl­ene­di­carboxyl­ate ligands, to form almost linear chains parallel to [001]. Hydro­gen bonds involving the non‐coordinated water mol­ecule connect these chains to form a three‐dimensional framework.     

Crystal Structures and Raman Spectra of cis‐[SnCl4(H2O)2]·2H2O,cis‐[SnCl4(H2O)2]·3H2O, [Sn2Cl6(OH)2(H2O)2]·4H2O,and [HL][SnCl5(H2O)]·2.5H2O (L=3‐acetyl‐5‐benzyl‐1‐phenyl‐4, 5‐dihydro‐1, 2, 4‐triazine‐6‐one oxime,C18H18N4O2)

The complexes cis‐[SnCl₄(H₂O)₂]·2H₂O ( 1 ), [Sn₂Cl₆(OH)₂(H₂O)₂]·4H₂O ( 3 ), and [HL][SnCl₅(H₂O)]·2.5H₂O ( 4 ) were isolated from a CH₂Cl₂ solution of equimolar amounts of SnCl₄ and the ligand L (L=3‐acetyl‐5‐benzyl‐1‐phenyl‐4, 5‐dihydro‐1, 2, 4‐triazine‐6‐one oxime, C₁₈H₁₈N₄O₂) in the presence of moisture. 1 crystallizes in the monoclinic space group Cc with a = 2402.5(1) pm, b = 672.80(4) pm, c = 1162.93(6) pm, β = 93.787(6)° and Z = 8. 4 was found to crystallize monoclinic in the space group P2₁, with lattice parameters a = 967.38(5) pm, b = 1101.03(6) pm, c = 1258.11(6) pm, β = 98.826(6)° and Z = 2. The cell data for the reinvestigated structures are: [SnCl₄(H₂O)₂]·3H₂O ( 2 ): a = 1227.0(2) pm, b = 994.8(1) pm, c = 864.0(1) pm, β = 103.86(1)°, with space group C2/c and Z = 4; 3 : a = 961.54(16) pm, b = 646.29(7) pm, c = 1248.25(20) pm, β = 92.75(1)°, space group P2₁/c and Z = 4.     

A cyanide‐bridged bimetallic complex, [CrPr(CN)6(C3H7NO)4(H2O)3]·H2O

The crystal structure of the bimetallic cyanide‐bridged title complex, tri­aqua‐1κ³O‐μ‐cyano‐1:2κ²N:C‐penta­cyano‐2κ⁵C‐tetrakis(N,N‐di­methyl­form­amide)‐1κ⁴O‐chromium(III)­prase­odymium(III) monohydrate, was obtained by single‐crystal X‐ray diffraction. The central praseodymium(III) ion is eight‐coordinate, arranged in a square antiprism, while the chromium(III) ion is six‐coordinate, oriented octahedrally. Molecules in the crystal lattice are held together by a network of hydrogen bonds.     

[{Na(7‐Nitro‐5‐sulfonate‐naphthalene‐1,4‐dicarboxy‐acid (H2O)2}·H2O]n: A Water‐Soluble 2D Layer Polymeric Complex with Microporous Molecular Channels

The X‐ray crystallographic studies are reported for a water‐soluble sodium complex of organic acid, {[Na(NSNDC)(H₂O)₂]·H₂O}_n, (NSNDC = 7‐Nitro‐5‐sulfonate‐napthalene‐1,4‐dicarboxy‐acid). It contains layers of vertically oriented NNSDC‐anions sandwiching cations and water molecules. The rows of anions are linked in a direction by sodium ions and along b by hydrogen bonding, which have microporous channels (9.410 × 3.210Ų) along the crystallographic b‐axis. Considering the Na coordination environments, π‐π stacking interaction between aryl ring and hydrogen bonds, the title compound represents a stably 2D infinitely extended structure.     

RbCrIII(C2O4)2·2H2O,Cs2Mg(C2O4)2·4H2O and Rb2CuII(C2O4)2·2H2O: three new complex oxalate hydrates

Rubidium chromium(III) dioxalate dihydrate [di­aqua­bis(μ‐oxalato)­chromium(III)­rubidium(I)], [RbCr(C₂O₄)₂(H₂O)₂], (I), and dicaesium magnesium dioxalate tetrahydrate [tetra­aqua­bis(μ‐oxalato)­magnesium(II)­dicaesium(I)], [Cs₂Mg(C₂­O₄)₂(H₂O)₄], (II), have layered structures which are new among double‐metal oxalates. In (I), the Rb and Cr atoms lie on sites with imposed 2/m symmetry and the unique water molecule lies on a mirror plane; in (II), the Mg atom lies on a twofold axis. The two non‐equivalent Cr and Mg atoms both show octahedral coordination, with a mean Cr—O distance of 1.966 Å and a mean Mg—O distance of 2.066 Å. Dirubid­ium copper(II) dioxalate dihydrate [di­aqua­bis(μ‐oxalato)­copper(II)­dirubidium(I)], [Rb₂Cu(C₂O₄)₂(H₂O)₂], (III), is also layered and is isotypic with the previously described K₂‐ and (NH₄)₂Cu^II(C₂O₄)₂·2H₂O compounds. The two non‐equivalent Cu atoms lie on inversion centres and are both (4+2)‐coordinated. Hydro­gen bonds are medium‐strong to weak in the three compounds. The oxalate groups are slightly non‐planar only in the Cs–Mg compound, (II), and are more distinctly non‐planar in the K–Cu compound, (III).     

Zur Koordination des Aluminiums in den Calciumaluminathydraten 2 CaO · Al2O3 · 8 H2O und CaO · Al2O3 · 10 H2O

On the Coordination of Al in the Calcium Aluminate Hydrates 2 CaO · Al₂O₃ · 8 H₂O and CaO · Al₂O₃ · 10 H₂O By investigations with high-resolution ²⁷Al-NMR in solids it is shown that in the compound 2 CaO · Al₂O₃ · 8 H₂O the Al merely exist in octahedral coordination. According to this and considering its structural relationship with 4 CaO · Al₂O₃ · 19 H₂O the dicalcium aluminate hydrate is proposed to be formulated as [Ca₂Al(OH)₆][Al(OH)₃ (H₂O)₃]OH. Likewise for the compound CaO · Al₂O₃ · 10 H₂O the octahedral coordination of the Al is proved by ²⁷Al-NMR. This result corresponds with literature according to which a constitution as cyclohexaaluminate Ca₃[Al₆(OH)₂₄] · 18 H₂O is proposed.