Special issue on organic free radical chemistry

<正>The discipline of organic free radical chemistry dates back over 110 years since the discovery of triphenylmethyl radical by Moses Gomberg in 1900. Organic radical reactions became a thriving field in synthetic organic chemistry for a decade or so starting from the mid 1980s. Nevertheless, the significance of radicals in organic synthesis somehow remained hidden for a long period of time. The 1990s saw a     

Microwave-assisted free radical chemistry using the persistent radical effect

Environmentally benign radical carboaminoxylations of various nonactivated olefins and difficult radical cyclization reactions are performed in good to excellent yields and with short reaction times under microwave irradiation.     

Laser-spectroscopic laboratory studies of atmospheric aqueous phase free radical chemistry

Nitrate radical (NO(3)) reactions with benzene (R-1), toluene (R-2), p-xylene (R-3), p-cresol (R-4) and mesitylene (R-5) have been studied by laser photolysis/long path laser absorption (LP-LPLA) in aqueous solution. Rate constants of k(1)=(4.0+/-0.6). 10(8), k(2)=(1.2+/-0.3). 10(9), k(3)=(1.6+/-0.1). 10(9), k(4)= (8.4+/-2.3). 10(8) and k(5)=(1.3+/-0.3). 10(9) lmol(-1)s(-1) were obtained at T=298 K. In addition, reaction rate coefficients for SO(-)(5)+Fe(2+)-->prod. (R-6) and SO(-)(5)+Mn(2+)-->prod. (R-7) of k(6)=(4.3+/-2.4). 10(7) lmol(-1)s(-1) and k(7)=(4.6+/-1.0). 10(6) lmol(-1)s(-1) (T=298 K, I-->0) have been obtained by the application of laser photolysis/UV-VIS broadband diode array spectroscopy. A new laser photolysis/UV-long path laser absorption experiment has been applied to study the reaction of the Cl(-)(2) radical anion with dissolved sulfur(IV). For the reactions Cl(-)(2)+HSO(-)(3)-->2Cl(-)+H(+)+SO(-)(3) (R-8) and Cl(-)(2)+SO(2-)(3)-->2Cl(-)+SO(-)(3) (R-9) rate coefficients of k(8)=(1.7+/-0.2). 10(8) lmol(-1)s(-1) (T=298 K, I-->0) and of k(9)=(6.2+/-0.3). 10(7) lmol(-1)s(-1) (T=279 K, I-->0) were obtained.     

Laser-spectroscopic laboratory studies of atmospheric aqueous phase free radical chemistry

Nitrate radical (NO₃) reactions with benzene (R-1), toluene (R-2), p-xylene (R-3), p-cresol (R-4) and mesitylene (R-5) have been studied by laser photolysis/long path laser absorption (LP-LPLA) in aqueous solution. Rate constants of k₁=(4.0±0.6) 10⁸, k₂=(1.2±0.3)10⁹, k₃=(1.6±0.1)10⁹, k₄= (8.4±2.3)10⁸ and k₅=(1.3±0.3)10⁹ lmol^-1s^-1 were obtained at T=298 K. In addition, reaction rate coefficients for SO^-₅+Fe²⁺prod. (R-6) and SO^-₅+Mn²⁺prod. (R-7) of k₆=(4.3±2.4) 10⁷ lmol^-1s^-1 and k₇=(4.6±1.0)10⁶ lmol^-1s^-1 (T=298 K, I0) have been obtained by the application of laser photolysis/UV-VIS broadband diode array spectroscopy. A new laser photolysis/UV-long path laser absorption experiment has been applied to study the reaction of the Cl^-₂ radical anion with dissolved sulfur(IV). For the reactions Cl^-₂+HSO^-₃2Cl^-+H⁺+SO^-₃ (R-8) and Cl^-₂+SO^2-₃2Cl^-+SO^-₃ (R-9) rate coefficients of k₈=(1.7±0.2)10⁸ lmol^-1s^-1 (T=298 K, I0) and of k₉=(6.2±0.3)10⁷ lmol^-1s^-1 (T=279 K, I0) were obtained.     

Assay of urinary free catecholamines: Routine use in a clinical chemistry laboratory

Summary The Bio-Rad HPLC method for the assay of urinary free catecholamines was employed during a period of 13 months, on samples of 720 subjects which were all normal but one with a pheochromocytoma diagnosis. The non-parametric reference limits were in accordance with those of other authors. Preliminary clean-up was carried out both in a standard urine and in the sample urine by means of a disposable micro-cation column prefilled with Bio-Rex 70 and ammonium acetate buffer which retain the weakly basic amines. Next epinephrine (E), norepinephrine (NE), dopamine (DA) and an internal standard (IS, N-methildopamine) were removed using ammonium pentaborate, a highly specific eluant. The final eluate was separated by HPLC on a Bio-Rad cation-exchange column, using 5% methanol in 0.06 M phosphate buffer (pH 5.2) as the mobile phase. Lyphochek normal and abnormal urine controls were elaborated with Lyphline Quality Control Program based on Westgard’s rules. Many amines may be retained on a carboxylic acid resin. However, very few compounds possess a cis-diol structure. In the absence of drug therapy, only three compounds are commonly seen in HPLC chromatograms in addition to E, NE, DA and IS. Two unidentified compounds elute before E. Alpha-methyldopa (Aldomet TM) is a common anti-hypertensive drug which forms two metabolites closely related to biogenic amines. Alpha-methylnorepinephrine elutes between E and NE. Alpha-methyldopamine coelutes with dopamine. The easy and quick method, giving good reproducibility and excellent clinic agreement, is suitable to pheochromocytoma differential diagnosis in clinical chemestry laboratories.     

OpenCDLig: a free web application for sharing resources about cyclodextrin/ligand complexes

OpenCDLig (freely available at ) implements a repository of complexes formed by cyclodextrins (CDs) and ligands (L) with related experimental data and make it available by an easy to use web interface. At the present time, the application supports two kinds of data: K, the association constant of a CD/L complex in [M⁻¹] and 3D structures in mol2 format. OpenCDLig is meant to become a community maintained source of experimental resources related to cyclodextrin complexes.     

Teaching relevant climate change topics in undergraduate chemistry courses: Motivations,student misconceptions,and resources

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From supramolecular chemistry towards constitutional dynamic chemistry and adaptive chemistry

Supramolecular chemistry has developed over the last forty years as chemistry beyond the molecule. Starting with the investigation of the basis of molecular recognition, it has explored the implementation of molecular information in the programming of chemical systems towards self-organisation processes, that may occur either on the basis of design or with selection of their components. Supramolecular entities are by nature constitutionally dynamic by virtue of the lability of non-covalent interactions. Importing such features into molecular chemistry, through the introduction of reversible bonds into molecules, leads to the emergence of a constitutional dynamic chemistry, covering both the molecular and supramolecular levels. It considers chemical objects and systems capable of responding to external solicitations by modification of their constitution through component exchange or reorganisation. It thus opens the way towards an adaptive and evolutive chemistry, a further step towards the chemistry of complex matter.     

A versatile method for tuning the chemistry and size of nanoscopic features by living free radical polymerization

A novel approach is presented for manipulating the size and chemistry of nanoscopic features using a combination of contact molding and living free radical polymerization. In this approach a highly cross-linked photopolymer, based on a methacrylate/acrylate mixture, was patterned into submicrometer-sized features on a silicon wafer using a contact-molding technique. A critical component of the monomer mixture was the incorporation of an initiator containing monomer into the network structure, which provides sites for functional group amplification. Features ranging in size from 5 microm to <60 nm were accurately replicated by this process and living free radical polymerizations, both atom transfer radical and nitroxide-mediated polymerization (NMP), could be conducted from these initiating sites to yield polymer brushes which represent a grafted layer of linear chains attached to the original network polymer. Grafts consisting of polystyrene, poly(methyl methacrylate), and poly(2-hydroxyethyl)methacrylate were grown with controlled thicknesses ranging from 10 to 143 nm and graft molecular weights of between 18 000 to 290 000 amu. As a result of this secondary graft process, feature sizes could be tuned from the original 100 nm down to 20 nm, and the surface chemistry varied from hydrophilic to hydrophobic starting from the same initial master pattern. The thin films and patterned features were characterized by contact angle, ellipsometry, optical, and atomic force microscopies.     

Thermodynamic cycle integration by computer simulation as a tool for obtaining free energy differences in molecular chemistry

Summary A new and promising development in the field of computer simulation of molecular systems is the socalled thermodynamic cycle integration technique, which combines well-known results from statistical thermodynamics with powerful computer simulation methods. The basic formulas, the development and the applications in the areas of drug design, protein engineering and conformational analysis of this elegant technique are discussed.     

Merging organometallic chemistry with polyoxometalate chemistry

A series of polyoxomolybdate-incorporated organometallic complexes has been obtained by reaction of [MBr(CO)5] or solvated M(CO)3+ ions (M = Mn or Br) with (nBu4N)2[Mo2O7] in methanol, sometimes in the presence of triols of the type RC(CH2OH)3 (R = Me or CH2OH). Their molecular structures are related to those of previously described polyoxoalkoxomolybdates through the formal replacement of fac-MoO2(OR)+ units by topologically equivalent fac-M(CO)3+ units. Representative pairs of structurally related clusters include [Mo2O6(OMe)4-Re(CO)32]2- and [Mo4O10(OMe)6]2-, [Mo2O4MeC(CH2O)32Mn(CO)3]- and [Mo3O6(OMe)MeC(CH2O)32]-, [Mo2O4HOCH2C(CH2O)32Mn(CO)32] and [Mo4O8(OEt)2MeC(CH2O)32], [Mo6O16(OMe)2MeC(CH2O)32-Mn(CO)32]2- and [Mo8O20(OMe)4-MeC(CH2O)32]2-. Although the frameworks of the majority of derivatives are based on tetranuclear units which display the common rhomb-like structure, the alternative cubane-type arrangement is observed in [Mo2O5(OMe)5M(CO)32]-.     

Putting the chemistry back into analytical chemistry

Aspects of the current status of and research in analytical chemistry are briefly discussed and the need for cost effective analytical procedures is emphasized. The present and future of a number of aspects of flow-injection analysis are considered. These include the basic theory, the kinetic features, the control features, time-based methodology, and the coupling of sample pretreatment with instrumentation. Several aspects of this latter topic are considered with particular reference to the flow-injection atomic spectrometry combination. Problems of kinetic mismatch between chemistry, manifold residence, and instrument operation are discussed and some possible solutions proposed including the use of closed loop manifolds.     

Can fluorine chemistry be green chemistry?

The roles of the element fluorine and its compounds in relationship to green chemistry and clean chemical manufacturing are considered.     

The free radical chemistry of carboxylic esters of 2-selenopyridine-N-oxide: a convenient synthesis of (L)-vinylglycine

Optically pure (L)-vinylglycine has been synthesised by two different methods. The first of these involves protected (L)-glutamate esters of $\text{N}$-hydroxy-2-seleno-pyridine. Such esters are shown to undergo the same decarboxylotive rearrangement as their thio-analogues. Oxidative elimination of the selenopyridine residue with ozone, and with the aid of hex-1-ene as sacrificial olefin for the work-up, gave the desired (L)-vinylglycine derivatives. Similarly, the modified Hunsdiecker reaction on the terminal carboxyl of suitably protected (L)-glutamic derivatives gave the nor-bromide which readily afforded the corresponding phenylselenides on treatment with phenylselenide anion. The sequence was then as above. Using the methyl ester with corbobenzyloxy protection for the amino-function an overall yield of crystalline optically pure (L)-vinylglycine of about 45% was obtained by either route.     

Linear free energy relationships and kinetic isotope effects reveal the chemistry of the Ado 2′-OH group

Using kinetic isotope effects (KIE) and Hammett correlations, we show that the main role of the adenosine 2′-OH group on deprotonation by the non nucleophilic base DBU during external acyl group transfer is to generate enhanced electron density on the attacking nucleophile through ionization. The small primary KIEs (1.2 and 1.6) and the large Hammett reaction constants (+2.25 and +3.19) obtained for the ethanolysis of 2′/3′-O-p-substituted benzoyl 5′-O-trityl adenosines and 2′-deoxyadenosines are consistent with an A_N + D_N reaction mechanism. The implications of our results are discussed in terms of chemical contributions of the 2′-OH group in the ribosome catalysis of peptide bond formation.