New beta-strand macrocyclic peptidomimetic analogues containing alpha-(O-, S- or NH-)aryl substituted glycine residues: synthesis,chemical and enzymatic properties

In so much as bis-macrocyclic peptidomimetics have been recognized as high affinity substrates for HIV-1 protease, we were interested in the design and synthesis of new bis-macrocyclic bioisosteric analogues whose general structure is displayed on Fig. 2. The structures of these new analogues are characterized by the specific replacement of the methylene of the benzyl group directly attached to the N-acyl glycine residue in the original molecule 1, by its main bioisosteres, i.e. O-, S- and NH-aryl groups. Knowing that an intermediate in which an heteroatomic aryl group is directly linked to a free amine glycine residue is not stable, we developed an original synthetic pathway which involved the coupling of a specific side chain to the exocyclic carboxylic acid function, followed by an elegant oxidation-nucleophilic substitution Steglich-type reaction. Analogues 2a-d were then submitted to chemical and enzymatic hydrolysis. We demonstrated that, as expected, the specific cleavage of the exocyclic N-acyl bond led to the release of aryl moieties (phenol, thiophenol and aniline species). These chemical and enzymatic stability studies brought to light the biological potential of such macrocyclic analogues in infected cells.     

Analysis of the selectivity of the complexation of complicated cyclopendants by molecular mechanics

The results of a calculation of the complex-forming conformations of two new organophosphorus polydentate ligands from the cyclopendant class, i.e., macrocyclic ligands with exocyclic groupings containing additional donor centers, have been presented. The compounds contain 1,4,7,10-tetraazacyclododecane as a macrocyclic fragment, and the pendant groups are methyl- and ethylphosphoryl groupings. The results of the construction of the probable ligand contour account for the high stability of the complexes with metal cations and the low complexation selectivity. The structure of the low-energy ligand contour of these compounds has a folded conformation for the macrocycle with conformational lability of the pendent groups, which does not favor the appearance of specific selective properties. The methods used to calculate complicated topological types of polydentate ligands have also been examined.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 22, No. 6, pp. 655–661, November–December, 1986.     

Sanglifehrin-cyclophilin interaction: degradation work,synthetic macrocyclic analogues,X-ray crystal structure,and binding data

Sanglifehrin A (SFA) is a novel immunosuppressive natural product isolated from Streptomyces sp. A92-308110. SFA has a very strong affinity for cyclophilin A (IC(50) = 6.9 +/- 0.9 nM) but is structurally different from cyclosporin A (CsA) and exerts its immunosuppressive activity via a novel mechanism. SFA has a complex molecular structure consisting of a 22-membered macrocycle, bearing in position 23 a nine-carbon tether terminated by a highly substituted spirobicyclic moiety. Selective oxidative cleavage of the C(26)=C(27) exocyclic double bond affords the spirolactam containing fragment 1 and macrolide 2. The affinity of 2 for cyclophilin (IC(50) = 29 +/- 2.1 nM) is essentially identical to SFA, which indicates that the interaction between SFA and cyclophilin A is mediated exclusively by the macrocyclic portion of the molecule. This observation was confirmed by the X-ray crystal structure resolved at 2.1 A of cyclophilin A complexed to macrolide 16, a close analogue of 2. The X-ray crystal structure showed that macrolide 16 binds to the same deep hydrophobic pocket of cyclophilin A as CsA. Additional valuable details of the structure-activity relationship were obtained by two different chemical approaches: (1) degradation work on macrolide 2 or (2) synthesis of a library of macrolide analogues using the ring-closing metathesis reaction as the key step. Altogether, it appears that the complex macrocyclic fragment of SFA is a highly optimized combination of multiple functionalities including an (E,E)-diene, a short polypropionate fragment, and an unusual tripeptide unit, which together provide an extremely strong affinity for cyclophilin A.     

Review of the quantitative structure–activity relationship modelling methods on estimation of formation constants of macrocyclic compounds with different guest molecules

There is an increasing interest in the use of quantitative structure–activity relationship (QSAR) approaches as a progressive tool in modelling and prediction of many physicochemical properties in host–guest interactions of macrocyclic complexes. A review is presented on the QSAR modelling of macrocyclic compounds formation constants, which focus on two most interesting macrocycles, e.g. crown ethers and cyclodextrins (CDs), with different guest molecules. The review starts with a short overview on experimental methods of stability constant measurement, followed by a short explanation of the QSAR methodologies. In the next section, we focus on and discuss QSAR techniques that used to predict the stability (binding) constants or free energy complexation of some most interesting macrocyclic compounds, e.g. CDs and crown ethers, with different guest molecules including anionic, cationic and neutral molecules.     

Metallomacrocycles with a Difference: Macrocyclic Complexes with Exocyclic Ruthenium(II)‐Containing Domains

The templated synthesis of organic macrocycles containing rings of up to 96 atoms and three 2,2′‐bipyridine (bpy) units is described. Starting with the bpy‐centred ligands 5,5′‐bis[3‐(1,4‐dioxahept‐6‐enylphenyl)]‐2,2′‐bipyridine and 5,5′‐bis[3‐(1,4,7‐trioxadec‐9‐enylphenyl)]‐2,2′‐bipyridine, we have applied Grubbs’ methodology to couple the terminal alkene units of the coordinated ligands in [FeL₃]²⁺ complexes. Hydrogenation and demetallation of the iron(II)‐containing macrocyclic complexes results in the isolation of large organic macrocycles. The latter bind {Ru(bpy)₂} units to give macrocyclic complexes with exocyclic ruthenium(II)‐containing domains. The complex [Ru(bpy)₂(L)]²⁺ (isolated as the hexafluorophosphate salt), in which L=5,5′‐bis[3‐(1,4,7,10‐tetraoxatridec‐12‐enylphenyl)]‐2,2′‐bipyridine, undergoes intramolecular ring‐closing metathesis to yield a macrocycle which retains the exocyclic {Ru(bpy)₂} unit. The poly(ethyleneoxy) domains in the latter macrocycle readily scavenge sodium ions, as proven by single‐crystal X‐ray diffraction and atomic absorption spectroscopy data for the bulk sample. In addition to the new compounds, a series of model complexes have been fully characterized, and representative single‐crystal X‐ray structural data are presented for iron(II) and ruthenium(II) acyclic and macrocyclic species.     

Selective syntheses of novel polyether fullerene multiple adducts

We have applied a modified macrocyclic tether approach to control multiple additions to C60. The technique of 3He NMR was used to confirm the selective formation of specific C60 multiple adducts by the macrocyclic tether approach. An oligoglycol was used as a flexible linker to produce macrocyclic polyether-linked malonates 5, 6, 8, and 9 under solid-liquid PTC (phase-transfer-catalysis) conditions. The formation of a single C60 tris-adduct, 3, from macrocyclic malonate 1 and 3He@C60 was proven by 3He NMR. Similarly, multiple additions to C60 of macrocyclic polyether malonate 5 gave C60 bis-adduct 10 selectively, while the reaction of C60 with macrocyclic malonate 8 gave bis-adducts 11 and 12. A similar process with macrocyclic malonate 6 gave tris-adduct 13 with high selectivity as well. Saponification of these C60 multiple adducts gives the corresponding polyacids that are potentially useful in biological applications. Macrocyclic polyether fullerenes are a new class of ionophores, which could be interesting for molecular recognition and for the development of biosensors.     

Biosynthetic Strategies for Macrocyclic Peptides

Macrocyclic peptides are predominantly peptide structures bearing one or more rings and spanning multiple amino acid residues. Macrocyclization has become a common approach for improving the pharmacological properties and bioactivity of peptides. A variety of ribosomal-derived and non-ribosomal synthesized cyclization approaches have been established. The biosynthesis of backbone macrocyclic peptides using seven new emerging methodologies will be discussed with regard to the features and strengths of each platform rather than medicinal chemistry tools. The mRNA display variant, known as the random nonstandard peptide integrated discovery (RaPID) platform, utilizes flexible in vitro translation (FIT) to access macrocyclic peptides containing nonproteinogenic amino acids (NAAs). As a new discovery approach, the ribosomally synthesized and post-translationally modified peptides (RiPPs) method involves the combination of ribosomal synthesis and the phage screening platform together with macrocyclization chemistries to generate libraries of macrocyclic peptides. Meanwhile, the split-intein circular ligation of peptides and proteins (SICLOPPS) approach relies on the in vivo production of macrocyclic peptides. In vitro and in vivo peptide library screening is discussed as an advanced strategy for cyclic peptide selection. Specifically, biosynthetic bicyclic peptides are highlighted as versatile and attractive modalities. Bicyclic peptides represent another type of promising therapeutics that allow for building blocks with a heterotrimeric conjugate to address intractable challenges and enable multimer complexes via linkers. Additionally, we discuss the cell-free chemoenzymatic synthesis of macrocyclic peptides with a non-ribosomal catalase known as the non-ribosomal synthetase (NRPS) and chemo-enzymatic approach, with recombinant thioesterase (TE) domains. Novel insights into the use of peptide library tools, activity-based two-hybrid screening, structure diversification, inclusion of NAAs, combinatorial libraries, expanding the toolbox for macrocyclic peptides, bicyclic peptides, chemoenzymatic strategies, and future perspectives are presented. This review highlights the broad spectrum of strategy classes, novel platforms, structure diversity, chemical space, and functionalities of macrocyclic peptides enabled by emerging biosynthetic platforms to achieve bioactivity and for therapeutic purposes.     

模拟酸雨对土壤中铁、锰、锌的浸出特征

酸雨是指pH值小于5·6的大气降水,它不仅危害土壤,还通过土壤间接地危害整个生态系统,因此生态系统酸沉降的承受能力很大程度上取决于土壤对酸雨的敏感性〔1,2〕。我国能源以煤炭为主,大气中硫、氮含量较高,酸雨中SO42:-NO3-的比值范围大致在4:1到15:1之间〔3〕。同时,我国酸雨主要分布在长江以南地区,这正好与酸性土壤分布区相重叠,很大程度上加剧了对土壤的破坏程度。本文用ICP-AES法研究了在模拟酸雨作用下,土壤中生物必要元素Fe、Mn、Zn的释放水平和释放特征。1实验部分1.1仪器及工作条件电感耦合等离子体-原子发射光谱分析仪(IC…     

Columnarly assembled liquid-crystalline peptidic macrocycles unidirectionally orientable over a large area by an electric field

Being inspired by naturally occurring peptidic macrocycles, we developed liquid-crystalline (LC) compounds 1 and 2 that are capable of self-assembling into hexagonal columnar mesophases over a wide temperature range that includes room temperature. Their bowl-shaped macrocyclic cores are conformationally robust because of the presence of internal H-bonds, while the columnar assembly is ensured by intermolecular H-bonding interactions involving the exocyclic amide units. When an electric field was applied to their LC films from a direction orthogonal to the film plane, the columns were oriented homeotropically over a large area.     

Characterization of the cereulide NRPS alpha-hydroxy acid specifying modules: activation of alpha-keto acids and chiral reduction on the assembly line

Several nonribosomal peptide natural products are composites of alpha-hydroxy acid and alpha-amino acid monomers. Cereulide, the emetic toxin from the human pathogen Bacillus cereus, and valinomycin, from Streptomyces spp., are closely related macrocyclic K+ ionophores. The macrocyclic core of each natural product contains alternating peptide (six) and ester (six) bonds, and their cyclododecadepsipeptide structures consist of a tetradepsipeptide unit repeated three times. Here we overexpress the cereulide NRPS alpha-hydroxy acid specifying modules from CesA and CesB and demonstrate that each contains an alpha-keto acid activating adenylation domain and a chiral alpha-ketoacyl-S-carrier protein reductase (alpha-KR). The logic used by the cereulide NRPS is likely at work in the valinomycin NRPS and may be the general strategy used in bacterial NRPSs to form alpha-hydroxy acid containing natural products.     

Part 1. modular approach to obtaining diverse tetrahydroquinoline-derived polycyclic skeletons for use in high-throughput generation of natural-product-like chemical probes

A practical synthesis of a tetrahydroaminoquinoline scaffold (12) was developed that used a stereocontrolled aza Michael as the key reaction. Three tetrahydroquinoline alkaloid-like, tricyclic derivatives 16, 18, and 19 with different medium to macrocyclic ring skeletons were obtained, using this scaffold as the starting material, in a modular manner. The macrocyclic compounds with an isolated olefin and an electron-deficient olefin were obtained by ring-closing metathesis approaches. Compounds 16 and 18 are unique and contain bridged 10- and 12-membered functionalized rings. The NMR studies of these compounds revealed interesting information on the conformation of the bicyclic scaffolds that was dependent on the nature and the size of the macrocyclic rings. Finally, this modular methodology, using compound 21 anchored onto the solid support, successfully led to the generation of different macrocyclic derivatives, 23, 25, and 27 in solid-phase synthesis. The solid-phase synthesis approach outlined in this article has the potential to generate tetrahydroquinoline-based tricyclic compounds containing different medium to macrocyclic architectures.     

New polyunsaturated silahydrocarbons

12-Membered highly unsaturated macrocyclic silahydrocarbon containing exocyclic methyl and benzyl groups is synthesized by the reaction of benzylmethyldi(bromomagnesiumethynyl)silane with dimethyldichlorosilane. Hydrosilylation of benzyl(triethynyl)silane with trichlorosilane with subsequent reaction of the formed adduct with trimethylsilylmagnesium bromide leads to the spherical dendrimer (N_C = 3) containing the benzyl group at the central Si atom, -CH=CH- groups in the inner sphere and numerous triple bonds on periphery. NMR spectra of the obtained compounds were studied.     

Anion-controlled endo- and exocyclic disilver(I) complexes of an S2O3 macrocycle

Anion-controlled endo- and exocyclic complexes were afforded in the reactions of an S(2)O(3) macrocycle with AgPF(6) and AgClO(4), respectively. The two coordination modes that provide the Ag ion position inside (by PF(6)(-)) or outside (by ClO(4)(-)) the macrocyclic cavity are explained by the anion-coordination ability toward the metal cation. Furthermore, each Ag center bridges two ligands via a regular coordinative bond or by pi coordination, forming a cyclic dimeric-type product. NMR titrations of the complex system in solution were also carried out.     

Study on enantiomeric separation of basic drugs by NACE in methanol‐based medium using erythromycin lactobionate as a chiral selector

A wide variety of chiral selectors have been employed in CZE, and among them macrocyclic antibiotics including glycopeptides, ansamycins, aminoglycosides and polypeptides exhibited prominent enantioselective properties toward abundant racemic compounds. Compared with CZE, the use of macrocyclic antibiotics as chiral selectors in NACE has not been reported previously. In this study, an approach to the enantioseparation of basic drugs by means of NACE with erythromycin lactobionate (EL) belonging to the group of macrolide antibiotics has been investigated. Especially different from the above four classes of antibiotics, there are no reports concerned with the use of macrolides which belong to macrocyclic antibiotics as chiral selectors in CE. In this work EL is first used as a chiral selector in NACE for the enantiomeric separations of two racemic basic drugs that possess high separability consisting of propranolol and duloxetine. Furthermore, EL possesses advantages such as high solubility and low viscosity in the solvent and very weak UV absorption. The chiral separations were achieved using Tris‐boric acid as the BGE and methanol as the organic medium. In the course of this work we observed that both migration time and enantioseparation were influenced by several parameters such as the pH and composition of the BGE, EL concentration, capillary temperature and applied voltage. Consequently, these parameters were systematically optimized in order to obtain the optimum enantioseparations.     

Henry reaction catalyzed by copper(I) complexes of a new pyridine‐containing macrocyclic ligand

The synthesis and characterization of copper(I) complexes of the novel pyridine‐containing macrocyclic ligand (PC‐L) and their use as catalysts in the Henry reaction are reported. The pyridine‐based 12‐membered tetraaza macrocyclic (PC‐L) ligand 1 can be obtained in good overall yield (85%) from commercially available starting materials. The Cu(I) complexes showed good catalytic activities in the Henry reaction of different aldehydes and nitroalkanes. Remarkable diastereoselectivity was observed when isatine was reacted with nitroethane under catalytic conditions. Copyright © 2011 John Wiley & Sons, Ltd.     

Toward mechanical switching of surface-adsorbed [2]catenane by in situ copper complexation

Using scanning tunneling microscopy (STM), electrospray ionization mass spectrometry (ESI-MS), and X-ray photoelectron spectroscopy (XPS), we demonstrate that a free [2]catenane consisting of two interlocking 30-membered rings (cat-30) can be deposited on a Ag(111) surface by vacuum sublimation without decomposition. The deposited cat-30 molecules self-organize as ordered dimer chain structures at the surface, presumably via intermolecular pi-pi stacking. An in situ addition of Cu atoms to the surface-adsorbed catenanes induces a drastic change in the molecular organization, i.e., from the dimer chain structure to isolated species. The nitrogen core level spectra suggest that the cat-30 phenanthroline units coordinate with Cu, indicating that the free catenane has been transformed into a Cu-complexed [2]catenane. Since it is known that the two interlocked macrocyclic rings of the free ligand cat-30 completely rearrange, i.e., circumrotate, upon complexation to copper, our results reveal that when adsorbed on the silver surface, the two macrocyclic rings of the free [2]catenane can glide within one another so as to generate the corresponding copper complex by in situ Cu complexation.     

Nineteen-membered pentaazamacrocyclic complexes bearing tetraamide groups

A new series of CoII, NiII, CuII and ZnII complexes incorporating pentaazamacrocyclic ligands has been prepared via the template condensation of o-aminobenzoic acid with succinic or phthalic acids in the presence of diethylenetriamine. The overall geometry and mode of bonding have been deduced on the basis of elemental analyses, i.r., 1H-n.m.r., e.p.r. and u.v.-vis. spectral studies, and conductivity and magnetic susceptibility measurements. An octahedral geometry is proposed for all the complexes, where five coordination sites are occupied by the macrocyclic nitrogens and the sixth by an anion.     

Chemometric investigation of systematic error in the analysis of biological materials by flame and electrothermal atomic absorption spectrometry

Systematic errors observed when using flame atomic absorption spectrometry (FAAS) and electrothermal atomic spectrometry (ETAAS) for the analysis of biological solid materials (seafood products) were evaluated. The effect of the sample pre-treatment method (microwave-assisted acid digestion, ultrasound-assisted acid leaching and slurry sampling) as well as the number of times that a certain pre-treatment process is repeated, were two factors evaluated. They give information about the effect of the sample pre-treatment on the uncertainty in the analysis. In addition, the number of measurements (i.e., number of times that an acid digest, an acid leachate or aqueous slurry are analysed) and the calibration technique used (aqueous calibration method or standard addition technique) were other two variables taken into account. This last factor gives information about the effect of the calibration on the results, while the replicate measurements showed the repeatability. A fifth variable named as sample matrix tests the influence of the matrix sample on the systematic error through the use of different reference materials. This variable allows the study of the effect of the trace element concentrations on the uncertainty because the trace elements contents are different in each reference material. Experimental design and principal component analysis approaches were used as chemometric tools. It has been found that the use of the slurry sampling technique in ETAAS and FAAS and the determination of high element concentrations by ETAAS have led to poor precision.     

Tuning the photophysical behavior of luminescent cyclam derivatives by cation binding and excited state redox potential

The emission from two photoactive 14-membered macrocyclic ligands, 6-((naphthalen-1-ylmethyl)-amino)-trans-6,13-dimethyl-13-amino-1,4,8,11-tetraaza-cyclotetradecane (L1) and 6-((anthracen-9-ylmethyl)-amino)-trans-6,13-dimethyl-13-amino-1,4,8,11-tetraaza-cyclotetradecane (L2) is strongly quenched by a photoinduced electron transfer (PET) mechanism involving amine lone pairs as electron donors. Time-correlated single photon counting (TCSPC), multiplex transient grating (TG), and fluorescence upconversion (FU) measurements were performed to characterize this quenching mechanism. Upon complexation with the redox inactive metal ion, Zn(II), the emission of the ligands is dramatically altered, with a significant increase in the fluorescence quantum yields due to coordination-induced deactivation of the macrocyclic amine lone pair electron donors. For [ZnL2]2+, the substituted exocyclic amine nitrogen, which is not coordinated to the metal ion, does not quench the fluorescence due to an inductive effect of the proximal divalent metal ion that raises the ionization potential. However, for [ZnL1]2+, the naphthalene chromophore is a sufficiently strong excited-state oxidant for PET quenching to occur.     

新型大环聚醚的合成及配位性能

本文报道一类新型大环聚醚的合成.在以1,7-二氧杂-4,10-二氮杂环十二烷(1a)及1,7,10,16-四氧杂-4,13-二氮杂环十八烷(1b)中的两个仲胺上进行含醚键的卤代烷取代反应,获得一批带有两个含有侧链醚键的新型冠醚.以碳酸钾为缩合剂,所得冠醚碱金属配合物经酸分解及四甲基氢氧化铵处理后,得游离的大环聚醚. 用溶解度法初步测定了这类冠醚对碱金属的配位性能.结果指出,其母环及侧链上氧原子数的多少及碱金属离子半径的大小均影响配合物的稳定性,其中有些冠醚对碱金属有良好的配位能力,有的还具有优异的选择性,例如N,N′-β-甲氧基乙基-1,7-二氧杂-4,10-二氮杂环十二烷(13a)对钾及钠离子的选择比大于18-c-β,并比4,4′(5′)-二甲基苯并-30-c-10还高.