Chemical synthesis of oligonucleotides. 3: Synthesis and characterization of N,O-protected ribophosphoesters for applications in RNA synthesis

The chemical synthesis of RNA, in contrast to that of DNA, poses problems due to fi) additional requirement of 2′-hydroxyl protection of the ribose moieties, and (ii) high lability of inter-ribophosphate bonds. Herein we report the synthesis and characterisation of N, O-protected ribophosphoesters 1 which are key monomeric derivatives in phosphotriester methodology for RNA synthesis. Both the isomeric 2′ and 3′-O-phosphates have been obtained and characterised. The utility of the t-butyl dimethylsilyl group for 2′-hydroxyl protection in the phosphotriester method is demonstrated by the synthesis of r(AUAU),r (UAUA) andr (CACA). Part 2, Rajendrakumaret al (1987) NCL communication number 4682     

Calculation of partial molar volume of components in supercritical ammonia synthesis system

The partial molar volumes of components in supercritical ammonia synthesis system are calculated in detail by the calculation formula of partial molar volume derived from the R-K equation of state under different conditions. The objectives are to comprehend phase behavior of components and to provide the theoretic explanation and guidance for probing novel processes of ammonia synthesis under supercritical conditions. The conditions of calculation are H₂/N₂ = 3, at a concentration of NH₃ in synthesis gas ranging from 2% to 15%, concentration of medium in supercritical ammonia synthesis system ranging from 20% to 50%, temperature ranging from 243 K to 699 K and pressure ranging from 0.1 MPa to 187 MPa. The results show that the ammonia synthesis system can reach supercritical state by adding a suitable supercritical medium and then controlling the reaction conditions. It is helpful for the supercritical ammonia synthesis that medium reaches supercritical state under the conditions of the corresponding total pressure and components near the normal temperature or near the critical temperature of medium or in the range of temperature of industrialized ammonia synthesis. __________ Translated from Journal of Chemical Industry and Engineering, 57(7):1503–1507 [译自: 化工学报]     

Asymmetric synthesis of (−)-codonopsinine

The asymmetric synthesis of (−)-codonopsinine was achieved in 7 steps (from commercially available tert-butyl crotonate) in 5% overall yield and >99:1 dr. The key step in this synthesis involved ring-closing iodoamination of a functionalised homoallylic amine, which occurred with concomitant N-debenzylation, to give a 3-iodopyrrolidine that was elaborated to (−)-codonopsinine.     

A facile synthesis of cyclic bis(3′→5′)diguanylic acid

This paper describes a new method for synthesizing biologically important cyclic bis(3′→5′)diguanylic acid (cGpGp) in a higher yield than that of the existing synthetic method. In the new synthesis, the following two means, in place of those used in the existing synthesis are employed as main strategies to cause the increase in product yield. One of these distinctive strategies in the new synthesis is that the phosphoramidite method is used for the preparation of a key synthetic intermediate of a linear guanylyl(3′→5′)guanylic acid derivative. This method allowed higher-yield formation of the intermediate than that by the triester method used in the existing synthesis. The second distinctive strategy used in the new synthesis is that allyloxycarbonyl and allyl groups are used for the protection of two guanine bases and two internucleotide bonds, respectively. These four allylic protectors can be removed all at once by the organopalladium-catalyzed reaction under neutral conditions. Thus, deprotection of the protected cGpGp precursor was achieved in the present synthesis in a shorter step and under milder conditions than the deprotection achieved in the existing synthesis, which uses diphenylacetyl and o-chlorophenyl groups as protectors for two guanine bases and two internucleotide bonds, respectively, whose full removal requires two different procedures including rather harsh basic treatment. As a result, technical loss and decomposition of the target product in the new synthesis is remarkably reduced.     

Synthesis of a novel ditopic ligand incorporating directly bonded 1,10-phenanthroline and 2,2′:6′,2″-terpyridine units

The synthesis of a rigid ditopic ligand incorporating a 1,10-phenanthroline directly connected through its 3-position to the 5-position of a 2,2′:6′,2″-terpyridine is described. The synthesis is based on a series of palladium(0)-catalyzed cross-coupling reactions (Stille and Suzuki couplings) starting from 1,10-phenanthroline and bromo-substituted pyridines.     

Facile solvothermal synthesis of highly active monoclinic scheelite BiVO4 for photocatalytic degradation of methylene blue under white LED light irradiation

In this study, BiVO₄ was successfully synthesized via the solvothermal process using a solvent mixture of ethylene glycol and water under different synthesis conditions of temperature and pH. Physicochemical properties such as crystal phase, morphology, and optical absorption of the as-synthesized BiVO₄ samples were characterized by X-ray diffraction (XRD), Raman spectra, field emission scanning electron microscopy (FE-SEM), and ultraviolet–visible diffraction reflection spectroscopy (UV–vis DRS). The XRD analysis showed that different synthesis conditions of temperature and pH significantly affected the growth of monoclinic BiVO₄ crystals oriented along (0 4 0) facets. Form SEM results, the synthesis conditions, including pH and temperature, have a great effect on the morphology of monoclinic structured BiVO₄. As the pH value increases in the range of 0–9 and temperature increases from 80 °C to 180 °C, the morphology of BiVO₄ changed from peanut-, rod-, and leaf-like shapes. The photocatalytic activities of as-synthesized BiVO₄ photocatalysts were evaluated by the photodegradation of methylene blue (MB) dye under irradiation of white LED light. We have found that by using appropriate synthesis conditions (the synthesis temperature of 140 °C and the synthesis pH of 7) the BiVO₄ exhibited high photocatalytic efficiency for MB degradation (about 82.30% after 180 min of irradiation). This result is due to the development of the BiVO₄ crystals oriented along (0 4 0) facets with an increase in the intensity ratio of I_(0 4 0)/I_(1 2 1). The growth of BiVO₄ crystals oriented along (0 4 0) facets may be beneficial to enhance the photocatalytic activity of monoclinic scheelite BiVO₄.     

Enantioselective total synthesis of (−)-strychnine: development of a highly practical catalytic asymmetric carbon-carbon bond formation and domino cyclization

An enantioselective total synthesis of (−)-strychnine was accomplished through the use of the highly practical catalytic asymmetric Michael reaction (0.1 mol% of (R)-ALB, greater than kilogram scale, without chromatography, 91% yield and >99% ee), and a domino cyclization that simultaneously constructed the B- and D- rings of strychnine (>77% yield). Newly-developed reaction conditions for thionium ion cyclization, NaBH₃CN reduction of the imine moiety in the presence of a Lewis acid to prevent the ring-opening reaction, and chemoselective reduction of the thioether (desulfurization) in the presence of exocyclic olefin were pivotal to complete the synthesis. The described chemistry paves the way for the synthesis of more advanced Strychnos alkaloids.     

Synthesis of cylindricine C and a formal synthesis of cylindricine A

This paper reports the synthesis of the alkaloid natural product (±)-cylindricine C, in addition to a formal synthesis of (±)-cylindricine A. The key step in our sequence is the (ipso) regioselective addition of an alkyl Grignard reagent to a C-2 substituted pyridinium salt to generate the dihydropyridone core of the alkaloid targets. After cyclisation to form the A and C rings of the cyclindricines the net outcome is a short (13 steps) synthesis of this natural product.     

Synthesis of new peptidic glycoclusters derived from β-alanine

The synthesis of an asymmetric glycocluster 1 has been achieved by coupling of a sugar unit with the β-alanine polypeptide, the principal chain, and combining a carbohydrate chain with the side chain causing it to branch from the N terminal. The synthesis of this side chain multivalent ligands is based on the scaffolding of some ω-amino acid (glycine, β-alanine, and GABA) derivatives. This method facilitated the synthesis of the cluster, of which the length of each unit differs.     

Synthesis of (±)-coerulescine and a formal synthesis of (±)-horsfiline

A straightforward synthesis of (±)-coerulescine and (±)-horsfiline has been established from 3-formyl-3-phenylpyrrolidine employing 4-hydroxypiperidine as the starting material. There are two remarkable steps for the synthesis of (±)-coerulescine and (±)-horsfiline. One is the rapid access to produce 3-formyl-3-phenylpyrrolidine by Lewis acid-catalyzed rearrangement of 3,4-dihydroxy-4-phenylpiperidine. The other key step is an intramolecular electrophilic cyclization from 3-benzylcarbamoyl-3-phenylpyrrolidine to the 3,3-spirocyclic 2-oxindole ring skeleton.     

An efficient synthesis of 5,5′-diaryl-2,2′-bichalcophenes

A convenient and high yielding synthesis of 5,5′-diaryl-2,2′-bichalcophenes (furans, thiophenes, and selenophenes) by the hexabutylditin-mediated homocoupling of 5-bromochalcophenes is described. This approach has been applied to the synthesis of the blue-light-emitting compound 5,5′-bis(4-aminophenyl)-2,2′-bifuryl (PFDA).     

Synthesis of substituted indoles using continuous flow micro reactors

Continuous flow micro fluidic devices for organic synthesis (‘micro reactors’) are becoming established in a number of facets of modern applied chemistry. As part of a concurrent research project with a pharmaceutical company for generation of materials of pharmaceutical interest within continuous flow environments, we present here, for the first time a series of indoles that have been produced within micro reactor systems. We have developed three different approaches to the synthesis, which are compared with traditional batch synthesis as well as each other in terms of ease of optimization, chemical suitability and versatility, and implications as to throughput. Typical throughputs of approach 1 (simulated classical synthesis) were in the region of 2 mgh⁻¹ of indoles such as tetrahydrocarbazole and cyclopentaindole. The second approach (based on Elk's modification of Fischer indole synthesis) gave throughputs of 5.7-8.9 mgh⁻¹ and the final approach (using heterocatalytic flow reactors) gave the highest throughputs of 12.7-20.1 mgh⁻¹. All throughputs are per single channel reactor system (i.e., one single reactor set up), and the latter two approaches produce viable output quantities for the syntheses of radiolabelled materials (where typically minute amounts of high purity materials are required from a rapid and safe production environment).     

Temperature dependent synthesis of micro- and meso-porous silica employing the thermo-responsive polymer of poly(<Emphasis Type="Italic">N</Emphasis>-isopropylacrylamide) as structure-directing agent

Temperature dependent synthesis of micro- and meso-porous silica employing the thermo-responsive homopolymer poly(N-isopropylacrylamide) or the random copolymer poly(N-isopropylacrylamide-co-acrylic acid) as structure-directing agent (SDA) and Na₂SiO₃ as silica source is proposed. The thermo-responsive character of the SDA provides the advantages including (1) temperature dependent synthesis of microporous silica, hierarchically micro-mesoporous silica, and mesoporous silica just by changing the aging temperature below or above the low critical solution temperature of the thermo-responsive SDA, and (2) elimination of the thermo-responsive SDA from silica matrix by water extraction. The synthesis mechanism is discussed, and the effect of the aging temperature and the weight radio of SDA/Na₂SiO₃ on the synthesis of micro- and meso-porous silica are studied. Microporous silica, hierarchically micro-mesoporous silica and mesoporous silica with the surface area at 3.5−9.0 × 10² m²/g and the pore volume at 0.28−1.13 cm³/g and the average pore size ranging from 1.1 to 9.0 nm are synthesized. The strategy affords a new and environmentally benign way to fabricate porous silica materials, and is believed to bridge the gap between the synthesis of microporous and mesoporous silica materials.     

Synthesis of quinone/hydroquinone sesquiterpenes

ent-Halimic acid has been used in the synthesis of the quinone/hydroquinone sesquiterpenes (−)-aureol, (−)-smenoqualone, (−)-neomamanuthaquinone and in the formal synthesis of (−)-cyclosmenospongine.     

Synthesis of symmetrical amino and aminomethyl derivatives of Tröger's base via Pd-catalyzed C-C and C-N bond formation

In this paper, we report the synthesis of amino and aminomethyl derivatives of Tröger's base (±)-1 and (±)-2. The key steps in the synthesis of (±)-1 and (±)-2 are Pd-catalyzed amination and cyanation, respectively, of the easily accessible dihalo derivatives (±)-3. These compounds are important intermediates in the synthesis of new ligands and building blocks for H-bonded supramolecular architectures.     

Synthesis and electrochemical behavior of polyaniline doped by electroactive anions

Electrochemical potentiodynamic and potentiostatic synthesis was used to obtain polyaniline (PANI) doped by new electroactive anions (EAAs): organic dianion of the diammonium salt of 2,2′-azinobis(3-ethylbenzothiazoline-6-sulfoacid) (ABTS) and inorganic ammonium hexachloroiridate dianion IrCl₆²⁻ (HCI). Two methods of electrochemical synthesis were studied: under constant potential (potentiostatic synthesis) and under potential cycling (potentiodynamic synthesis). The optimum ratio of EAA: principal electrolyte (1 M H₂SO₄) was found at which the maximum catalytic effect was obtained in the course of the synthesis and the principal properties of PANI obtained were preserved.     

Influence of reaction medium composition on enzymatic synthesis of galactooligosaccharides and lactulose from lactose concentrates prepared from whey permeate

The paper presents the results of investigations into the technological possibilities of controlling the transgalactosylation process of lactose in permeate after whey ultrafiltration in order to improve the efficiency of galactooligosaccharides or lactulose synthesis. The synthesis efficiency was influenced by the selection of a β-galactosidase preparation, substrate concentration and, in the synthesis of lactulose, also by the ratio of lactose and fructose added to the reaction mixture. The obtained synthesis efficiency of GOS and, most of all, of lactulose (65 g L⁻¹), may be found satisfactory. The study also resulted in a proposed GOS or lactulose concentrates (concentrated or dried) production technology using permeate after ultrafiltration of milk or whey as lactose sources. Presented at the 35th International Conference of the Slovak Society of Chemical Engineering, Tatranské Matliare, 26–30 May 2008.     

Total synthesis of (−)-incarvilline and (−)-incarvillateine

An enantioselective, concise total synthesis of (−)-incarvilline and (−)-incarvillateine has been achieved in longest linear 9 steps (24.3% overall yield) and in 11 steps (16.5% overall yield) from (−)-carvone, respectively. The present synthesis features a notable Favorskii rearrangement of the O-protected chlorohydrin derivative of (−)-carvone to construct four of the five contiguous stereocenters on the bicyclic piperidine moiety and DMAP-catalyzed esterification of incarvilline with α-truxillic acid anhydride to generate incarvillateine skeleton.     

Protecting group free syntheses of (±)-columbianetin and (±)-angelmarin

A five-step and protecting group free synthesis of (±)-columbianetin from cyclohexane-1,3-dione is reported. The former compound was converted into its p-hydroxycinnamate derivative, (±)-angelmarin, using Coster’s esterification procedure. Efforts to modify the synthesis so as to prepare angelmarin and columbianetin in an enantioselective manner are described.     

An oxidative coupling for the synthesis of arylated quaternary stereocentres and its application in the total synthesis of powelline and buphanidrine

Catechol derivatives directly bonded to all-carbon quaternary stereocentres are prevalent in nature. An oxidative coupling strategy for the synthesis of this motif is described. Pivoting on the base-catalysed Michael addition of carbon-centred pro-nucleophiles to in situ generated ortho-benzoquinones, the method is broad in scope, high yielding and provides remarkably simple access to this challenging motif. The application of this methodology in the total synthesis of the crinane-type amaryllidaceae alkaloids (±)-powelline and (±)-buphanidrine is demonstrated and our efforts towards an enantioselective synthesis described.