The NCI Drug Information System. 2. DIS Pre-Registry

The Pre-Registry Module of the Drug Information System (DIS) is a staging area through which all new compounds are passed prior to acquisition and testing. Several methods are available for the entry of structures into the Pre-Registry; all involve built-in data validation. Newly entered structures are examined by computer programs for structural novelty and potential for anticancer activity. For those compounds that proceed to acquisition, the various acquisition steps, such as letter writing and record updating, are performed automatically. When a sample is obtained, the entire Pre-Registry record is updated and moved forward into the permanent DIS chemistry files.     

The NCI Drug Information System. 4. Inventory and Shipping Modules

The Inventory/Shipping package of the NCI Drug Information System (DIS) is designed to support all inventory and shipping operations associated with the testing by the NCI of large numbers of chemicals for anticancer activity. Two major databases, an Inventory database and a Shipping History database, contain all of the data associated with these operations. Software that supports the operations in an online interactive manner also provides for the accessing and updating of these databases as necessary. Special hardware in the form of barcode reader/printers and digital balances is also interfaced to the system to improve the efficiency of the operations.     

The NCI Drug Information System. 6. System maintenance

The NCI Drug Information System (DIS) is a collection of 24 interactively searchable databases which contain all the data associated with NCI's drug screening program. Data flow into all of these databases upon a daily basis, and maintenance procedures have been developed which provide a high degree of currency to the files. An extensive security system controls both write access and read access to the DIS and matches both to the authorization possessed by each specific user. Detailed usage statistics are collected automatically. The cost of the overall system in terms of both manpower and machine time is discussed briefly.     

The NCI Drug Information System. 3. The DIS Chemistry Module

The Chemistry Module of the Drug Information System (DIS) handles a database of 400,000 structures. New or modified records are created in this database on a daily basis and are merged into the file promptly. The Chemistry database is searchable in a wide variety of ways and provides novel methods for both input and output of chemical structures.     

Fluorescent HIV-1 Dimerization Initiation Site: design, properties, and use for ligand discovery

The HIV-1 Dimerization Initiation Site (DIS) is an intriguing, yet underutilized, viral RNA target for potential antiretroviral therapy. To study the recognition features of this target and to provide a quantitative, rapid, and real-time tool for the discovery of new binders, a fluorescence-based assay has been constructed. It relies on strategic incorporation of 2-aminopurine, an isosteric fluorescent adenosine analogue, into short hairpin RNA constructs. These oligomers self-associate to form a kissing loop that thermally rearranges into a more stable extended duplex, thereby mimicking the association and structural features of the native RNA sequence. We demonstrate the ability of two fluorescent DIS constructs, DIS272(2AP) and DIS273(2AP), to report the binding of known DIS binders via changes in their emission intensity. Binding of aminoglycosides such as paromomycin to DIS272(2AP) results in significant fluorescence enhancement, while ligand binding to DIS273(2AP) results in fluorescence quenching. These observations are rationalized by comparison to the sequence-analogous bacterial A-site, where the relative emission of the fluorescent probe is dependent on the placement of the flexible purine residues inside or outside the helical domain. Analysis of binding isotherms generated using DIS272(2AP) yields submicromolar EC50 values for paromomycin (0.5 +/- 0.2 microM) and neomycin B (0.6 +/- 0.2 microM). Other neomycin-family aminoglycosides are less potent binders with neamine, the core pharmacophore, displaying the lowest affinity of 21 +/- 1 microM. Screening of additional aminoglycosides and their derivatives led to the discovery of new, previously unreported, aminoglycoside binders of the HIV DIS RNA, among them butirosin A (5.5 +/- 0.6 microM) and apramycin (7.6 +/- 1.0 microM). A conformationally constrained neomycin B analogue displays a rather high affinity to the DIS (1.9 +/- 0.2 microM). Among a series of nucleobase aminoglycoside conjugates, only the uracil derivatives display a measurable affinity using this assay with EC50 values in the 2 microM range. In addition, similarity between the solution behavior of HIV-1 DIS and the bacterial decoding A-site has been observed, particularly with respect to the intra- and extra-helical residence of the conformationally flexible A residues within the bulge. Taken together, the observations reported here shed light on the solution behavior of this important RNA target and are likely to facilitate the design of new DIS selective ligands as potential antiretroviral agents.     

Deep inelastic scattering: Status and future

Deep inelastic lepton–nucleon scattering (DIS) is briefly characterised in its historical role in establishing the standard model of the electroweak and strong interactions. Key results are presented which are being obtained with the world's highest energy DIS experiments performed at HERA. Prospects are discussed for the future of DIS and experimentation with electron–proton beams approaching the TeV scale of energy in the next decade(s).     

Metabolic profiles of dioscin in rats revealed by ultra‐performance liquid chromatography quadrupole time‐of‐flight mass spectrometry

Dioscin (DIS), one of the most abundant bioactive steroidal saponins in Dioscorea sp., is used as a complementary medicine to treat coronary disease and angina pectoris in China. Although the pharmacological activities and pharmacokinetics of DIS have been well demonstrated, information regarding the final metabolic fates is very limited. This study investigated the in vivo metabolic profiles of DIS after oral administration by ultra‐performance liquid chromatography quadrupole time‐of‐flight mass spectrometry method. The structures of the metabolites were identified and tentatively characterized by means of comparing the molecular mass, retention time and fragmentation pattern of the analytes with those of the parent compound. A total of eight metabolites, including seven phase I and one phase II metabolites, were detected and tentatively identified for the first time. Oxidation, deglycosylation and glucuronidation were found to be the major metabolic processes of the compound in rats. In addition, a possible metabolic pathway on the biotransformation of DIS in vivo was proposed. This study provides valuable and new information on the metabolism of DIS, which will be helpful for further understanding its mechanism of action. Copyright © 2015 John Wiley & Sons, Ltd.     

Investigation of activated carbon surface heterogeneity by argon and nitrogen low-pressure quasi-equilibrium volumetry

Surface heterogeneity can be assessed by adsorption of different gaseous probes on solid materials. In the present study, four types of activated carbons were analyzed by classical N2 Brunauer-Emmett-Teller (BET) measurements and by low-pressure quasi-equilibrium volumetry (LPQEV) (Villieras, F.; Michot, L. J.; Bardot, F.; Cases, J. M.; Francois, M.; Rudzinski, W. Langmuir 1997, 13, 1104). Three methods of data evaluation were applied: (a) the Frenkel-Halsey-Hill method for estimation of fractal dimensions from BET data, (b) the Horwath-Kawazoe method to calculate the pore size distribution from LPQEV Ar and N2 adsorption isotherms, and (c) the derivative isotherm summation (DIS) method to describe the solid's surface heterogeneity by a concept of local derivative isotherms. Similar Ar and N2 adsorption energy distributions were obtained on all carbons, which indicates the presence of mainly nonpolar surfaces. When adsorption was described by the van der Waals equation, the ratio between the interaction energy of different energetic sites with argon and nitrogen was 0.88. This value corresponded very well with a slope obtained when Ar and N2 positions of local isotherms by the DIS method were compared. This relationship has an important impact because it enables one to constrain the modeling of local isotherms. This study, besides the surface information, showed large possibilities of the DIS method for the surface analysis not only in terms of solid heterogeneity characterization but also in terms of polarity assessment.     

ISO/IEC 17043: the new International Standard for proficiency testing

The revision of ISO/IEC Guide 43 is well underway by CASCO Working Group 28, with the author as Convener. The ballot on the committee draft was successfully completed in June 2008. The Working Group met in September to resolve the CD comments and to recommend that the document should advance as an ISO/IEC DIS. The document is in harmony with ISO/IEC 17025 (2005), ILAC G13 (2007), and the IUPAC Harmonized Protocol (2006) for proficiency testing. Major changes from Guide 43 include considerations for inspection bodies, requirements for metrological traceability of assigned values for calibration schemes, limitations on subcontracting, requirements for reporting the uncertainty of assigned values, and for including method information and technical commentary in scheme reports. Minor changes include requirements for equipment used in the manufacture and testing of proficiency test items, considerations for handling laboratories’ reported uncertainties, and the issuance of certificates of participation. These changes have not generated any substantial objections from the CASCO membership and liaisons.     

气相色谱-质谱法测定动物组织中三种1,2-二苯乙烯类药物的残留量

建立了动物组织中己烯雌酚(DES)、己二烯雌酚(DIS)和己烷雌酚(HS)残留量的气相色谱-质谱分析方法。动物组织样品在碱性条件下用乙酸乙酯提取,经碳酸钠溶液液-液分配净化,再用硅胶柱固相萃取净化,洗脱液均分成两份后经氮气吹干,分别用双三甲基硅基三氟乙酰氨(BSTFA)和七氟丁酸酐(HFBA)衍生,采用选择离子监测模式(SIM)进行测定,外标法定量。检出限为0.30 μg/kg(cis-DES),0.10 μg/kg(trans-DES和HS)和0.15 μg/kg(DIS)。在0.5~4.0 μg/kg添加水平,回收率为73.0%～86.5%,相对标准偏差(RSD)为1.0%～7.2%。衍生物的峰面积与样品浓度在10～1000 μg/L(DES和DIS) 和5～500 μg/L(HS)范围内呈良好的线性关系,线性回归系数大于0.99。     

Revision of ISO guide 25

 ISO/IEC guide 25 is the internationally recognised base document for the accreditation of laboratories. Laboratory accreditation is a system of peer assessment and a formal recognition that a laboratory is competent to perform specific tests or types of tests ISO/IEC guide 25 plays a fundamental role in the life of the analytical chemist and is pivotal to the acceptance of the philosophy "once tested everywhere accepted" and to ensuring the mutual acceptance of test data. Within the EU, the attainment of accreditation to ISO/IEC guide 25 has become a way of life and it is now mandatory for laboratories engaged in certain regulatory work areas. Guide 25 is currently under revision and over the past 2 years or so it has been the subject of much debate among the calibration and testing community and it has engendered a considerable amount of written and oral comments. The latest revision entitled "Draft International Standard ISO/IEC DIS 17025: General Requirements for the Competence of Testing and Calibration Laboratories" was circulated to national standard organisations for their "comment and approval" in mid 1998. Voting on this document commenced on 9 July and terminates on 9 December 1998. It is anticipated that a final draft could be circulated in 1999. In accordance with the Vienna agreement this is a parallel ISO/CEN enquiry. This paper will discuss the implications of the technical requirements of the current document for analytical chemistry with particular emphasis on, the strengths, weaknesses and deficits inherent in the draft circulated in July 1998.     

Quantification of total petrol hydrocarbons (TPH) in soil by IR-spectrometry and gas chromatography – conclusions from three proficiency testing rounds

Due to the utilisation of 1,1,2-trichlorotrifluoroethane (CFE) as extraction solvent the IR-spectrometric determination of total petrol hydrocarbon (TPH) in soil according to ISO/TR 11046 has been replaced by gas chromatography/flame ionisation detection (GC/FID) after extraction with a halogen-free solvent according to ISO/DIS 16703:2001. The results obtained with both methods by field laboratories in three proficiency testing (PT) rounds are compared. The consensus means obtained with GC/FID are typically 10%–20% (ranging between 0% and 25%) higher than those found with IR-spectroscopy. On the contrary, coefficients of variation (CV) are roughly double in case of GC/FID and are briefly discussed against the background of the Horwitz equation. Received: 19 November 2001 Accepted: 17 March 2002     

Standardization of quality management in the medical laboratory

A new ISO standard (ISO/DIS 15189) on quality management in the medical laboratory is being prepared. The origins and development of this in ISO and the interaction by CEN in Europe is presented. The major comments already received are given as well as the likely progress of this ISO standard. Once published it will have implications for accreditation of medical laboratories throughout the world and particularly those in Europe.     

The cationic polymerization and copolymerization of isopropenylmetallocene monomers

Three types of isopropenylmetallocene monomers were synthesized and subjected to polymerization and copolymerization by cationic initiators; (1) isopropenylferrocene (IF); (2) (η⁵-isopropenylcyclopentadienyl)dicarbonylnitrosylmolybdenum (IDM); and (3) 1,1′-diisopropenylcyclopentadienylstannocene (DIS), and related derivatives of each. IF was synthesized by a three-step procedure involving the acetylation of ferrocene, conversion of the latter to 2-ferrocenyl-2-propanol, and dehydration of the carbinol. IF was homopolymerized under various cationic initiation conditions, but only low molecular weight homopolymers were obtained. Copolymerization of IF with styrene and with p-methoxy-α-methylstyrene also gave only low molecular weight products. The formation of only low molecular weight polymers in all polymerization reactions is believed to result from the effect of the unusually high stability of ferrocenyl carbenium ions on its propagation reaction. The observed polymerization behavior of α-trifluoromethylvinylferrocene is in accord with this conclusion. IDM and DIS did not form polymeric products under cationic conditions, although copolymers could be obtained for each of these monomers and styrene with a free radical polymerization initiator (AIBN).     

Facile N≡N Bond Cleavage by Anionic Trimetallic Clusters V3−xTaxC4− (x=0–3): A DFT Study

Activation of N₂ on anionic trimetallic V_3−xTa_xC₄⁻ (x=0–3) clusters was theoretically studied employing density functional theory. For all studied clusters, initial adsorption of N₂ (end-on) on one of the metal atoms (denoted as Site 1) is transferred to an of end-on: side-on: side-on coordination on three metal atoms, prior to N₂ dissociation. The whole reaction is exothermic and has no global energy barriers, indicating that the dissociation of N₂ is facile under mild conditions. The reaction process can be divided into two processes: N₂ transfer (TRF) and N−N dissociation (DIS). For V-series clusters, which has a V atom on Site 1, the rate-determining step is DIS, while for Ta-series clusters with a Ta on Site 1, TRF may be the rate-determining step or has energy barriers similar to those of DIS. The overall energy barriers for heteronuclear V₂TaC₄⁻ and VTa₂C₄⁻ clusters are lower than those for homonuclear V₃C₄⁻ and Ta₃C₄⁻, showing that the doping effect is beneficial for the activation and dissociation of N₂. In particular, V−Ta₂C₄⁻ has low energy barriers in both TRF and DIS, and it has the highest N₂ adsorption energy and a high reaction heat release. Therefore, a trimetallic heteronuclear V-series cluster, V−Ta₂C₄⁻, is suggested to have high reactivity to N₂ activation, and may serve as a prototype for designing related catalysts at a molecular level.     

Identification of chemical substances by testing and screening of hypotheses. I. General

The characteristic features and the constituents of an identification procedure for chemical substances are discussed. This procedure is a screening of identification hypotheses followed by experimental testing of each one. The testing operation consists of comparison of the values of the quantities measured with other measurement results or reference data, resulting in the Student's ratio, the significance level, the matching of spectra, etc. The performance and the correctness of identification are expressed as "identification uncertainty", i.e. the probability of incorrect identification. The statistical significance level and other similarity values in spectra, chromatography retention parameters, etc. are the particular measures of uncertainty. Searching of prior data and estimation of the prior probability of the presence of particular compounds in the sample (matrix) to be analysed simplifies the setting up and cancelling of hypotheses during screening. Usually, identification is made by the analyst taking into account measurement results, prior information and personal considerations. The estimation of uncertainty and rules for the incorporation of prior data, make the result of identification less subjective.     

Proficiency test on the determination of mineral oil from polluted soils

Mineral oil products are abundant sources of environmental contamination. A Finnishproficiency test was carried out to investigate the quality of data provided in an analysis of mineral oil in polluted soils. The homogeneity and stability of the samples were tested. The calculated concentration or the median value of the results was used as the assigned value because of the unavailability of certified reference materials (CRMs). The samples were analysed using an infrared spectroscopy (IR) or gas chromatography (GC) procedure. Even if the participating laboratories had little experience with GC, the results were promising. Hence, the GC procedure will replace IR as the new ISO standard (ISO/DIS 16703) in the near future in many Finnish environmental laboratories. There is a need for CRMs for the determination of mineral oil using the GC method due to common contamination problems caused by mineral oil. Received: 9 December 2001 Accepted: 14 February 2002     

Activity and steady-state kinetics of one-dimensional kinetic Ising model

In this work, we focused on the kinetics of a one-dimensional Ising system (1DIS) with constant nearest-neighbor interaction (NNI). The exact solution of both thermodynamics and kinetics of this system under quasi-chemical approximation (QCA) had been shown in the literature, and the equilibrium solution was exact. In this work, it was discussed why QCA applied the best in the case of 1DIS with constant NNI. Furthermore, extension had been made to discuss that due to this special reason, perhaps the kinetics of the system under QCA is the correct steady-state kinetics. Inspired by this observation, the activity and activity coefficients of the system was studied closely to re-examine the form of the equation of motion under QCA. A novel concept—the instantaneous activities and the corresponding instantaneous activity coefficients—was introduced, and in terms of these quantities the kinetics seemed to be much simpler and physically more meaningful. The chevron plot of this system was also discussed and new way of looking at the rollover of chevron plots was presented.     

U.S. EPA Regulatory Perspectives on the Use of QSAR for New and Existing Chemical Evaluations

Abstract

As testing is not required, ecotoxicity or fate data are available for ≈ 5% of the approximately 2,300 new chemicals/year (26,000 + total) submitted to the US-EPA. The EPA's Office of Pollution Prevention and Toxics (OPPT) regulatory program was forced to develop and rely upon QSARs to estimate the ecotoxicity and fate of most of the new chemicals evaluated for hazard and risk assessment. QSAR methods routinely result in ecotoxicity estimations of acute and chronic toxicity to fish, aquatic invertebrates, and algae, and in fate estimations of physical/chemical properties, degradation, and bioconcentration. The EPA's Toxic Substances Control Act (TSCA) Inventory of existing chemicals currently lists over 72,000 chemicals. Most existing chemicals also appear to have little or no ecotoxicity or fate data available and the OPPT new chemical QSAR methods now provide predictions and cross-checks of test data for the regulation of existing chemicals. Examples include the Toxics Release Inventory (TRI), the Design for the Environment (DfE), and the OECD/SIDS/HPV Programs. QSAR screening of the TSCA Inventory has prioritized thousands of existing chemicals for possible regulatory testing of: 1) persistent bioaccumulative chemicals, and 2) the high ecotoxicity of specific discrete organic chemicals.