计算平均力势的理论方法

A universal theoretical framework is proposed for calculating potential of mean force (PMF) between two solute particles immersed in a solvent bath, the present method overcomes all of drawbacks of previous methods. The only input required to implement the recipe is solvent density distribution profile around a single solute particle. The universal framework is applied to calculate the PMF between two large spherical particles immersed in small hard sphere solvent bath. Comparison between the present predictions and existing simulation data shows reliability of the present recipe. Effects of solvent-solute interaction detail, solvent bulk density, and solute size on the excess PMF are investigated. The resultant conclusion is that depletion of solvent component by the solute particle induces attractive excess PMF, while gathering of solvent component by the solute particle induces repulsive excess PMF, high solvent bulk density and large solute size can strengthen the tendency of attraction or repulsion. Relevance of transition from depletion attraction to gathering repulsion with the biomolecular interaction, i.e. hydrophobic attraction and hydration repulsion, is discussed.     

Solvent mediated interactions close to fluid-fluid phase separation: microscopic treatment of bridging in a soft-core fluid

Using density functional theory we calculate the density profiles of a binary solvent adsorbed around a pair of big solute particles. All species interact via repulsive Gaussian potentials. The solvent exhibits fluid-fluid phase separation, and for thermodynamic states near to coexistence the big particles can be surrounded by a thick adsorbed "wetting" film of the coexisting solvent phase. On reducing the separation between the two big particles we find there can be a "bridging" transition as the wetting films join to form a fluid bridge. The effective (solvent mediated) potential between the two big particles becomes long ranged and strongly attractive in the bridged configuration. Within our mean-field treatment the bridging transition results in a discontinuity in the solvent mediated force. We demonstrate that accounting for the phenomenon of bridging requires the presence of a nonzero bridge function in the correlations between the solute particles when our model fluid is described within a full mixture theory based upon the Ornstein-Zernike equations.     

Isostructural solid-solid transitions in binary asymmetrical hard sphere system: based on solvent-mediated potential

Size dependence is imparted onto a modified bridge functional, adopted for a recently proposed semi-analytical hard sphere reference system theory for calculation of solvent-mediated potential (SMP). The SMP for two large hard sphere particles immersed in a small hard sphere solvent bath predicted by the present improved version is in satisfactory agreement with the prediction from a theoretically based fitting formula. Isostructural solid-solid transitions in the binary asymmetrical hard sphere system are investigated based on a single-component macrofluid approximation combined with the improved version. It is found that the isostructural solid-solid transition appears when size asymmetry increases. The limiting asymmetry size ratio is near 1/8. As the size asymmetry increases, critical density for both large and small hard sphere components for the fcc isostructural solid-solid transition increases and decreases, respectively.     

Surface forces in polymer fluids: a comparison between simulations and density functional theory

A polymer density functional theory is evaluated in terms of its ability to predict interactions between large surfaces in a polymer fluid. Comparisons are made with results from simulations in an expanded isotension ensemble. The variation of the net surface-surface interaction with adsorption strength is examined. Cases where the monomers interact via a pure hard sphere potential are investigated, but we have also studied the effect of attractions between the monomers. In all cases, we obtain an almost quantitative agreement between the simulated results and the predictions from the polymer density functional theory.     

Local solvent density augmentation around a solute in supercritical solvent bath: 1. A mechanism explanation and a new phenomenon

A recently proposed partitioned density functional (DF) approximation (Phys. Rev. E 2003, 68, 061201) and an adjustable parameter-free version of a Lagrangian theorem-based DF approximation (LTDFA: Phys. Lett. A 2003, 319, 279) are combined to propose a DF approximation for nonuniform Lennard-Jones (LJ) fluid. Predictions of the present DF approximation for local LJ solvent density inhomogeneity around a large LJ solute particle or hard core Yukawa particle are in good agreement with existing simulation data. An extensive investigation about the effect of solvent bath temperature, solvent-solute interaction range, solvent-solute interaction magnitude, and solute size on the local solvent density inhomogeneity is carried out with the present DF approximation. It is found that a plateau of solvent accumulation number as a function of solvent bath bulk density is due to a coupling between the solvent-solute interaction and solvent correlation whose mathematical expression is a convolution integral appearing in the density profile equation of the DF theory formalism. The coupling becomes stronger as the increasing of the whole solvent-solute interaction strength, solute size relative to solvent size, and the closeness to the critical density and temperature of the solvent bath. When the attractive solvent-solute interaction becomes large enough and the bulk state moves close enough to the critical temperature of the solvent bath, the maximum solvent accumulation number as a function of solvent bath bulk density appears near the solvent bath critical density; the appearance of this maximum is in contrast with a conclusion drawn by a previous investigation based on an inhomogeneous version of Ornstein-Zernike integral equation carried out only for a smaller parameter space than that in the present paper. Advantage of the DFT approach over the integral equation is discussed.     

Theory of repulsive charged colloids in slit-pores

Using classical density functional theory (DFT) we analyze the structure of the density profiles and solvation pressures of negatively charged colloids confined in slit pores. The considered model, which was already successfully employed to study a real colloidal (silica) suspension [S. H. L. Klapp et al., Phys. Rev. Lett. 100, 118303 (2008)], involves only the macroions which interact via the effective Derjaguin-Landau-Verwey-Overbeek (DLVO) potential supplemented by a hard core interaction. The solvent enters implicitly via the screening length of the DLVO interaction. The free energy functional describing the colloidal suspension consists of a hard sphere contribution obtained from fundamental measure theory and a long range contribution which is treated using two types of approximations. One of them is the mean field approximation (MFA) and the remaining is based on Rosenfeld's perturbative method for constructing the Helmholtz energy functional. These theoretical calculations are carried out at different bulk densities and wall separations to compare finally to grand canonical Monte Carlo simulations. We also consider the impact of charged walls. Our results show that the perturbative DFT method yields generally qualitatively consistent and, for some systems, also quantitatively reliable results. In MFA, on the other hand, the neglect of charge-induced correlations leads to a breakdown of this approach in a broad range of densities.     

Solvent density inhomogeneities and solvation free energies in supercritical diatomic fluids: a density functional approach

Density functional theory is used to explore the solvation properties of a spherical solute immersed in a supercritical diatomic fluid. The solute is modeled as a hard core Yukawa particle surrounded by a diatomic Lennard-Jones fluid represented by two fused tangent spheres using an interaction site approximation. The authors' approach is particularly suitable for thoroughly exploring the effect of different interaction parameters, such as solute-solvent interaction strength and range, solvent-solvent long-range interactions, and particle size, on the local solvent structure and the solvation free energy under supercritical conditions. Their results indicate that the behavior of the local coordination number in homonuclear diatomic fluids follows trends similar to those reported in previous studies for monatomic fluids. The local density augmentation is particularly sensitive to changes in solute size and is affected to a lesser degree by variations in the solute-solvent interaction strength and range. The associated solvation free energies exhibit a nonmonotonous behavior as a function of density for systems with weak solute-solvent interactions. The authors' results suggest that solute-solvent interaction anisotropies have a major influence on the nature and extent of local solvent density inhomogeneities and on the value of the solvation free energies in supercritical solutions of heteronuclear molecules.     

Effect of attractions on the structure of polymer solutions confined between surfaces: a density functional approach

A density functional theory is presented to study the effect of attractions on the structure of polymer solutions confined between surfaces. The polymer molecules have been modeled as a pearl necklace of freely jointed hard spheres and the solvent as hard spheres, both having Yukawa-type attractions and the mixture being confined between attractive Yukawa-type surfaces. The present theory treats the ideal gas free energy functional exactly and uses weighted density approximation for the hard chain and hard sphere contributions to the excess free energy functional. The attractive interactions are calculated using the direct correlation function obtained from the polymer reference interaction site model theory along with the mean spherical approximation closure. The theoretical predictions on the density profiles of the polymer and the solvent molecules are found to agree quite well with the Monte Carlo simulation results for varying densities, chain lengths, wall separations, and different sets of interaction potentials.     

一个新的桥泛函及其在非均一流体密度泛函理论中的应用

基于对OZ 方程的渐近行为与Taylor级数展开的分析，提出了一个新的桥泛函，桥泛函被表达为间接相关函数的函数，Taylor级数展开的重整化导致了一个可调参数，通过将所提出的桥泛函与一个最近提出的密度泛函理论方法学，以及单个硬墙的sum 规则结合，可以确定可调参数.所提出的桥泛函能预言如下非均一流体的密度分布：硬球流体接近一个硬墙与在球形空隙内，Lennard-Jones 流体与缔合硬球流体在两个硬墙之内.理论预言与文献所报导的模拟数据符合很好.     

AB2型聚合物流体的表面结构性质

在密度泛函理论(DFT)框架下, 应用改进的基本度量理论(MFMT)表达硬球作用对自由能泛函的贡献, 根据统计力学理论结合加权密度近似(WDA)表达聚合作用对自由能泛函的贡献, 建立了描述AB2型聚合物流体的化学势, 得到了聚合物流体在硬球颗粒表面的密度分布表达式, 计算了聚合物流体在硬球颗粒表面附近的密度分布, 并探讨了体积分数、聚合程度和硬球颗粒尺度对体系密度分布的影响. 此外, 通过体系密度分布, 进一步分析了体积分数、聚合程度和硬球颗粒尺度与剩余吸附的关系.     

Modeling simple amphiphilic solutes in a Jagla solvent

Methanol is an amphiphilic solute whose aqueous solutions exhibit distinctive physical properties. The volume change upon mixing, for example, is negative across the entire composition range, indicating strong association. We explore the corresponding behavior of a Jagla solvent, which has been previously shown to exhibit many of the anomalous properties of water. We consider two models of an amphiphilic solute: (i) a "dimer" model, which consists of one hydrophobic hard sphere linked to a Jagla particle with a permanent bond, and (ii) a "monomer" model, which is a limiting case of the dimer, formed by concentrically overlapping a hard sphere and a Jagla particle. Using discrete molecular dynamics, we calculate the thermodynamic properties of the resulting solutions. We systematically vary the set of parameters of the dimer and monomer models and find that one can readily reproduce the experimental behavior of the excess volume of the methanol-water system as a function of methanol volume fraction. We compare the pressure and temperature dependence of the excess volume and the excess enthalpy of both models with experimental data on methanol-water solutions and find qualitative agreement in most cases. We also investigate the solute effect on the temperature of maximum density and find that the effect of concentration is orders of magnitude stronger than measured experimentally.     

Effective interactions in colloid-semipermeable membrane systems

We investigate effective interactions between a colloidal particle, immersed in a binary mixture of smaller spheres, and a semipermeable membrane. The colloid is modeled as a big hard sphere, and the membrane is represented as an infinitely thin surface, which is fully permeable to one of the smaller spheres and impermeable to the other one. Within the framework of the density functional theory, we evaluate depletion potentials and we consider two different approximate theories: the simple Asakura-Oosawa approximation and the accurate White-Bear version of the fundamental measure theory. The effective potentials are compared with the corresponding potentials for the hard, nonpermeable wall. Using statistical-mechanical sum rules, we argue that the contact value of the depletion potential between a colloid and a semipermeable membrane is smaller in magnitude than the potential between a colloid and a hard wall. A heuristic argument is provided that the colloid-semipermeable membrane effective interactions are generally weaker than these near a hard nonpermeable wall. These predictions are confirmed by explicit calculations, and the effect is more pronounced for smaller osmotic pressures. The depletion potential for a colloidal particle inside a semipermeable vesicle is stronger than the potential for the colloidal particle located outside of a vesicle. We find that the asymptotic decay of the depletion potential for the semipermeable membrane is similar to that for the nonpermeable wall and reflects the asymptotics of the total correlation function of the corresponding binary mixture of smaller spheres. Our results demonstrate that the ability of the membrane to change its shape as well as specific interactions constitute an important factor in determining the effective interactions between the semipermeable membrane and the colloidal macroparticle.     

Structure of spherical electric double layers: a density functional approach

A density functional theory is presented for the structure of spherical electric double layers within the restricted primitive model, where the macroion is considered as a hard sphere having uniform surface charge density, the small ions as charged hard spheres, and the solvent is taken as a dielectric continuum. The theory is partially perturbative as the hard-sphere contribution to the one-particle correlation function is evaluated using suitably averaged weighted density and the ionic part is obtained through a second-order functional Taylor expansion around the uniform fluid. The theory is in quantitative agreement with Monte Carlo simulation for the density profiles and the zeta potentials over a wide range of macroion sizes and electrolyte concentrations. The theory is able to provide interesting insights about the layering and the charge inversion phenomena occurring at the interface.     

A density functional approach to retention in chromatography with chemically bonded phases

A density functional approach to the retention in a chromatography with chemically bonded phases is developed. The bonded phase is treated as brush built of grafted polymers. The chain molecules are modelled as freely jointed spheres. Segments of all components interact with the surface via the hard wall potential whereas interactions between the segments are described by Lennard-Jones (12-6) potential. The structure of the bonded phase is investigated. The distribution of different solutes in the stationary phases is determined. An influence of the following parameters on the retention is analyzed: the grafting density, the grafted chains length, the strength of molecular interactions, the solute sizes, temperature. The theoretical predictions are consisted with numerous experimental results.     

A solvation‐free‐energy functional: A reference‐modified density functional formulation

The three‐dimensional reference interaction site model (3D‐RISM) theory, which is one of the most applicable integral equation theories for molecular liquids, overestimates the absolute values of solvation‐free‐energy (SFE) for large solute molecules in water. To improve the free‐energy density functional for the SFE of solute molecules, we propose a reference‐modified density functional theory (RMDFT) that is a general theoretical approach to construct the free‐energy density functional systematically. In the RMDFT formulation, hard‐sphere (HS) fluids are introduced as the reference system instead of an ideal polyatomic molecular gas, which has been regarded as the appropriate reference system of the interaction‐site‐model density functional theory for polyatomic molecular fluids. We show that using RMDFT with a reference HS system can significantly improve the absolute values of the SFE for a set of neutral amino acid side‐chain analogues as well as for 504 small organic molecules. © 2015 Wiley Periodicals, Inc.     

Alternative fundamental measure theory for additive hard sphere mixtures

The purpose of this short paper is to present an alternative fundamental measure theory (FMT) for hard sphere mixtures. Keeping the main features of the original Rosenfeld's FMT [Phys. Rev. Lett. 63, 980 (1989)] and using the dimensional and the low-density limit conditions a new functional is derived incorporating Boublik's multicomponent extension [Mol. Phys. 59, 371 (1986)] of highly accurate Kolafa's equation of state for pure hard spheres. We test the theory for pure hard spheres and hard sphere mixtures near a planar hard wall and compare the results with the original Rosenfeld's FMT and one of its modifications and with new very accurate simulation data. The test reveals an excellent agreement between the results based on the alternative FMT and simulation data for density profile near a contact and some improvement over the original Rosenfeld's FMT and its modification at the contact region.     

Depletion potentials in colloidal mixtures of hard spheres and rods

The depletion potential between a hard sphere and a planar hard wall, or two hard spheres, imposed by suspended rigid spherocylindrical rods is computed by the acceptance ratio method through the application of Monte Carlo simulation. The accurate results and ideal-gas approximation results of the depletion potential are determined with the acceptance ratio method in our simulations. For comparison, the depletion potentials are also studied by using both the density functional theory and Derjaguin approximations. The density profile as a function of positions and orientations of rods, used in the density functional theory, is calculated by Monte Carlo simulation. The potential obtained by the acceptance ratio method is in good agreement with that of density functional theory under the ideal-gas approximation. The comparison between our results and those of other theories suggests that the acceptance ratio method is the only efficient method used to compute the depletion potential induced by nonspherical colloids with the volume fraction beyond the ideal-gas approximation.     

Incorporating the excluded solvent volume and surface charges for computing solvation free energy

Gauss's law or Poisson's equation is conventionally used to calculate solvation free energy. However, the near‐solute dielectric polarization from Gauss's law or Poisson's equation differs from that obtained from molecular dynamics (MD) simulations. To mimic the near‐solute dielectric polarization from MD simulations, the first‐shell water was treated as two layers of surface charges, the densities of which are proportional to the electric field at the solvent molecule that is modeled as a hard sphere. The intermediate water was treated as a bulk solvent. An equation describing the solvation free energy of ions using this solvent scheme was derived using the TIP3P water model. © 2013 Wiley Periodicals, Inc.     

Application of reference‐modified density functional theory: Temperature and pressure dependences of solvation free energy

Recently, we proposed a reference‐modified density functional theory (RMDFT) to calculate solvation free energy (SFE), in which a hard‐sphere fluid was introduced as the reference system instead of an ideal molecular gas. Through the RMDFT, using an optimal diameter for the hard‐sphere reference system, the values of the SFE calculated at room temperature and normal pressure were in good agreement with those for more than 500 small organic molecules in water as determined by experiments. In this study, we present an application of the RMDFT for calculating the temperature and pressure dependences of the SFE for solute molecules in water. We demonstrate that the RMDFT has high predictive ability for the temperature and pressure dependences of the SFE for small solute molecules in water when the optimal reference hard‐sphere diameter determined for each thermodynamic condition is used. We also apply the RMDFT to investigate the temperature and pressure dependences of the thermodynamic stability of an artificial small protein, chignolin, and discuss the mechanism of high‐temperature and high‐pressure unfolding of the protein. © 2017 Wiley Periodicals, Inc.