On-line identification of 4″-isovalerylspiramycin I in the genetic engineered strain of S. spiramyceticus F21 by liquid chromatography with electrospray ionization tandem mass spectrometry,ultraviolet absorbance detection and nuclear magnetic resonance spectrometry

LC-hyphenated techniques were applied to the on-line identification of isovalerylspiramycin I (isp I), a spiramycin-like macrolide in the crude extract of fermentation broth from a genetically engineered strain of S. spiramyceticus F21. In the structural characterization of the large molecular secondary metabolite of isp I, LC–DAD-UV–ESI-MSⁿ analysis played a crucial role, and stop-flow LC–¹H NMR measurement, with bitespiramycin used as reference, was a valuable complement approach. This rational approach proved to be an efficient means for the rapid and accurate structural determination of known microbial secondary metabolites, by which targeted isolation of component(s) of interest can be subsequently performed for further biological and pharmacological studies in drug development.     

Structure and redox behavior of Ru(II)-diene complexes

A series of Ru(acac)₂(η⁴-diene) complexes containing cis- and trans-diene coordination have been investigated by cyclic voltammetry to correlate structural bonding and conformation patterns of diene ligands with redox behaviors. The solid-state structure of Ru(acac)₂(2,3-dimethyl-1,3-butadiene) has been determined by single crystal X-ray diffraction methods. Ru(acac)₂(2,3-dimethyl-1,3-butadiene) crystallizes in the monoclinic space group C2/c with a = 12.368(2) Å, b = 17.0600(2) Å, c = 16.0110(2) Å, β = 98.4405(10)° and V = 3341.38(10) ų for Z = 8. A structural comparison between several Ru-trans-η⁴-diene complexes and Ru-η⁴-1,3-cyclohexadiene revealed no difference in the Ru-C(diene) bond distances. However, through cyclic voltammetry experiments these species demonstrated different redox behavior, as function of the coordinated diene ligand.     

Identification of polyoxypregnane glycosides from the stems of Marsdenia tenacissima by high-performance liquid chromatography/tandem mass spectrometry

A facile method based on high-performance liquid chromatography coupled with electrospray ionization tandem mass spectrometry (HPLC/(+)ESI-MSⁿ) has been established for the analysis of polyoxypregnane glycosides in the stems of Marsdenia tenacissima. The data reveals the ability of MSⁿ in the structural elucidation of polyoxypregnane glycosides including the nature of the polyoxypregnane core, the kinds of the substituents and the types of sugar residues. Offline Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) is also performed to assign accurate elemental compositions. In this study, eighteen polyoxypregnane glycosides have been investigated. Among these components, five compounds are unambiguously identified as Marsdenoside K, Tencissoside A, B, C and D; two compounds are established as novel compounds based on mass spectral data; and the other eleven compound's structures are tentatively proposed. Furthermore, breakdown curves are constructed to distinguish five pairs of isomers among these eighteen compounds. As far as our knowledge, this is the first report on identification of polyoxypregnane glycosides in the stems of M. tenacissima by HPLC/ESI-MSⁿ directly, which could save time and material consuming efforts in traditional phytochemistry analyses.     

Sensitive monitoring of monoterpene metabolites in human urine using two-step derivatisation and positive chemical ionisation-tandem mass spectrometry

A gas chromatographic–positive chemical ionisation-tandem mass spectrometric (GC–PCI-MS/MS) method for the simultaneous determination of 10 oxidative metabolites of the monoterpenoid hydrocarbons α-pinene, (R)-limonene, and Δ³-carene ((+)-3-carene) in human urine was developed and tested for the monoterpene biomonitoring of the general population (n = 36). The method involves enzymatic cleavage of the glucuronides followed by solid-supported liquid–liquid extraction and derivatisation using a two-step reaction with N,O-bis(trimethylsilyl)-trifluoroacetamide and N-(trimethylsilyl)imidazole. The method proved to be both sensitive and reliable with detection limits ranging from 0.1 to 0.3 μg L⁻¹. In contrast to the frequent and distinct quantities of (1S,2S,4R)-limonene-1,2-diol, the (1R,2R,4R)-stereoisomer could not be detected. The expected metabolite of (+)-3-carene, 3-caren-10-ol was not detected in any of the samples. All other metabolites were detected in almost all urine samples.     

Establishing a Metabolite Extraction Method to Study the Metabolome of Blastocystis Using NMR

Blastocystis is an opportunistic parasite commonly found in the intestines of humans and other animals. Despite its high prevalence, knowledge regarding Blastocystis biology within and outside the host is limited. Analysis of the metabolites produced by this anaerobe could provide insights that can help map its metabolism and determine its role in both health and disease. Due to its controversial pathogenicity, these metabolites could define its deterministic role in microbiome’s “health” and/or subsequently resolve Blastocystis’ potential impact in gastrointestinal health. A common method for elucidating the presence of these metabolites is through ¹H nuclear magnetic resonance (NMR). However, there are currently no described benchmarked methods available to extract metabolites from Blastocystis for ¹H NMR analysis. Herein, several extraction solvents, lysis methods and incubation temperatures were compared for their usefulness as an extraction protocol for this protozoan. Following extraction, the samples were freeze-dried, re-solubilized and analysed with ¹H NMR. The results demonstrate that carrying out the procedure at room temperature using methanol as an extraction solvent and bead bashing as a lysis technique provides a consistent, reproducible and efficient method to extract metabolites from Blastocystis for NMR.     

A N NMR study of tautomerism in dimethyl dihydro-1,2,4,5-tetrazine-3,6-dicarboxylate

Dimethyl dihydro-1,2,4,5-tetrazine-3,6-dicarboxylate can exist either in 1,2- or 1,4-dihydro tautomeric forms. The ¹⁵N NMR spectra of dimethyl dihydro-1,2,4,5-tetrazine-3,6-dicarboxylate were measured at the ¹⁵N natural abundance level as well as in ¹⁵N doubly labelled selectively and in ¹⁵N completely labelled compounds (20% ¹⁵N). The J(¹⁵N,¹⁵N) value was determined in ¹⁵N completely labelled compounds (20% ¹⁵N) using 1D ¹⁵N INADEQUATE and was found to be 12.2 ± 0.2 Hz in deuteriochloroform, acetonitrile-d₃, DMSO-d₆ and CD₃OH. Very similar ¹⁵N chemical shifts and ¹J(¹⁵N,¹H) values were also observed in all the solvents. This indicates that compound 1 exists completely in the 1,4-dihydro tautomeric form (i.e., as dimethyl 1,4-dihydro-1,2,4,5-tetrazine-3,6-dicarboxylate) in all the solvents tested.     

Baseline isotopic data of polyhalogenated compounds

The δ²H- and δ¹³C-values of polyhalogenated compounds were determined by EA-IRMS. Most of the compounds were related to the chloropesticides DDT and its metabolites, hexachlorocyclohexanes, and toxaphene, as well as several polybrominated compounds such as bromophenols and -anisoles. δ²H-values ranged between −235‰ and +75‰ whereas δ¹³C-values were found in the range −22‰ to −38‰. No correlation between δ²H- and δ¹³C-values could be identified. Comparative analysis clarified that bromophenols and the corresponding bromoanisoles may vary in their isotopic distribution. ²H NMR was used to quantify abundances of ²H isotopomers. Quantification of isotopomers of 2,4-dibromophenol and 2,4-dibromoanisole proved that both compounds from different suppliers do not originate from the same source. Differences in the δ²H-values of two toxaphene products were further investigated by the synthesis of products of different degree of chlorination from camphene. It was shown that the δ¹³C-values remained mostly unaltered as was expected since no carbon is lost in this procedure. However, the reaction products became enriched in ²H with increasing degree of chlorination. Different δ²H-values of the starting material will also impact the δ²H-values of the chlorination products.     

Biosynthesis of naphthylisoquinoline alkaloids: synthesis and incorporation of an advanced C2-labeled isoquinoline precursor

Biosynthetic studies on naphthylisoquinoline alkaloids involving a specifically [1,1′-¹³C₂]-labeled dihydroisoquinoline 7 are described. The synthesized precursor 7 was fed to callus cultures of Triphyophyllum peltatum and the isolated secondary metabolites were characterized by spectroscopic methods (¹H, ¹³C NMR, and INADEQUATE experiments). The unambiguous incorporation of the precursor into dioncophylline A and two minor naphthylisoquinolines, together with the formation of the labeled corresponding trans-configured tetrahydroisoquinoline, proves the implication of such advanced intermediates in the proposed biosynthetic pathway of naphthylisoquinoline alkaloids.     

Crystalline O,O′-di-sec-butyl and O,O′-diethyl dithiophosphate platinum(II) complexes: Synthesis, C and P CP/MAS NMR, single crystal X-ray diffraction studies and thermal behaviour

Crystalline bis(O,O′-di-sec-butyldithiophosphato)platinum(II) was prepared and studied by means of ¹³C, ³¹P CP/MAS NMR spectroscopy and single-crystal X-ray diffraction. The unit cell of the platinum(II) compound is comprised of one centrosymmetric mononuclear molecule [Pt{S₂P(O-sec-C₄H₉)₂}₂], in which the dithiophosphate groups display structural equivalence in both ³¹P NMR and XRD data. A pair of the dithiophosphate ligands exhibit the same S,S′-bidentate chelating structural function and form two planar four-membered chelate rings, [PtS₂P], in this molecule. The planar configuration of the [PtS₄] chromophore in structure 1 is governed by the dsp²-hybrid state of platinum(II). The structural states of the dithiophosphate groups in two different samples of complex 1 (one crystallised from ethanol and the other one precipitated from an aqueous solution) are all characterised by almost rhombic ³¹P chemical shift tensors. The observed essential dispersion of the ³¹P NMR chemical shift is caused by a coexistence of six optical isomers of molecule 1. The thermal behaviour of this compound was studied by means of simultaneous thermal analysis (a combination of TG and DSC) under an argon atmosphere. The thermal behaviour shows that the mass of 1 is lost in three steps, involving successive thermal decompositions of the organic and inorganic parts of this compound with platinum(II) dithio-meta-phosphate and reduced metallic platinum as the intermediate and the final products, respectively.     

New approaches to the structural modification of olean-type pentacylic triterpenes via microbial oxidation and glycosylation

Microbial transformation of 4 olean-type pentacyclic triterpenes (OPTs), 3-oxo oleanolic acid (1), 3-acetyl oleanolic acid (2), oleanolic acid (3), and esculentoside A (4) was studied. After the screening of 12 strains of microbes, preparative biotransformation by two strains of Streptomyces griseus ATCC 13273 and Aspergillus ochraceus CICC 40330 resulted in the isolation of 10 metabolites. The microbial catalyzed high efficient regio-selective methyl oxidation and glycosylation were discovered, which could be provided as an alternative method to expand the structural diversity of OPTs. All the structures of the metabolites were elucidated unambiguously by ESI-MS, ¹H NMR, ¹³C NMR, and 2D-NMR spectroscopy.     

An efficient synthetic approach towards trans-β-amino acids and demonstration of their utility in the design of therapeutically important β-peptides and α,β-peptide aldehydes

An efficient synthetic approach towards trans-β^2,3-amino acids involving anti-selective aldol, azidation and controlled hydrolysis as key steps is discussed. Apart from structural elaboration of these building blocks to homo- and hetero-dipeptides, possibility of selective endocyclic cleavage of the chiral auxiliary was advantageously used in the preparation of α,β-hybrid peptide alcohols and corresponding aldehydes, which are promising candidates for biological evaluation against proteases of therapeutic interest.     

A method for stabilizing the cis prolyl peptide bond: influence of an unusual n→π interaction in 1,3-oxazine and 1,3-thiazine containing peptidomimetics

The cis/trans isomer ratios of the Xaa-Pyr (Pyr = pyrrolidine) 3° amide bonds are significantly high (∼90% cis) in the novel peptidomimetics where Pyr contains 1,3-oxazine (Oxa) or 1,3-thiazine (Thi) at its 2 position. We find that an unusual n→π_i−1^∗ interaction, selectively stabilizes the cis conformer and the n)(n repulsion destabilizes the trans conformer of these molecules. Both these electronic effects oppose the steric effects in the 3° amide bond. The structural requirements for manifestation of these electronic effects are determined.     

Metabolomic Profiling of Antioxidant Compounds in Five Vachellia Species

The genus Vachellia, previously known as Acacia, belongs to the family Fabaceae, subfamily Leguminosae, which are flowering plants, commonly known as thorn trees. They are traditionally used medicinally in various countries including South Africa for the treatment of ailments such as fever, sore throat, Tuberculosis, convulsions and as sedatives. The aim of this study was to determine biochemical variations in five Vachellia species and correlate their metabolite profiles to antioxidant activity using a chemometric approach. The antioxidant activity of five Vachellia aqueous-methanolic extracts were analyzed using three methods: 2,2-di-phenyl-1-picrylhydrazyl (DPPH) radical scavenging assay, 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid (ABTS⁺) analysis and the ferric reducing antioxidant power (FRAP) assay by means of serial dilution and bioautography with the thin-layer chromatography (TLC) method. Amongst the Vachellia extracts tested, V. karroo, V. kosiensis and V. xanthophloea demonstrated the highest DPPH, ABTS⁺ and FRAP inhibitory activity. The antioxidant activities of DPPH were higher than those obtained by ABTS⁺, although these values varied among the Vachellia species. Proton nuclear magnetic resonance (¹H NMR), coupled with multivariate statistical modeling tools such as principal component analysis (PCA) and orthogonal partial least squares discriminant analysis (OPLS-DA), were performed to profile metabolites responsible for the observed activity. The OPLS-DA categorized the five Vachellia species, separating them into two groups, with V. karroo, V. kosiensis and V. xanthophloea demonstrating significantly higher radical scavenging activity than V. tortilis and V. sieberiana, which clustered together to form another group with lower radical scavenging activity. Annotation of metabolites was carried out using the ultra-high-performance liquid chromatography–quadrupole time-of-flight mass spectrometry (UHPLC-qTOF-MS), and it tentatively identified 23 metabolites of significance, including epigallocatechin (m/z = 305.0659), methyl gallate (m/z = 183.0294) and quercetin (m/z = 301.0358), amongst others. These results elucidated the metabolites that separated the Vachellia species from each other and demonstrated their possible free radical scavenging activities.     

Synthetic,spectral and structural studies of mononuclear tris(κ-amidate) aluminium complexes supported by tripodal ligands

The synthesis and characterization of mononuclear tris(κ²-amidate) aluminium complexes supported by the tripodal ligands, [N(o-PhNC(O)R)₃]³⁻ (R = ⁱPr and ^tBu), are described. The molecular structures of [Al(N(o-PhNC(O)ⁱPr)₃)] and [Al(N(o-PhNC(O)^tBu)₃)] have been determined by X-ray diffraction studies. Both neutral six-coordinate aluminium complexes display coordination geometries that are intermediate between octahedral and trigonal prismatic. Solution-state NMR studies (¹H, ¹³C and ²⁷Al) indicate that these structures are non-fluxional in solution. Detailed analysis of the solid-state structures shows that slight changes in the relative size of the amidate acyl substituents do not significantly impact the solid-state structures. However, large substituents may be required to prevent the formation of multinuclear species.     

Thermodynamic investigations on derivatives of pyrimidine nucleic acid bases: Joint use of calorimetric, volumetric and structural data for the description of properties of pyrimidine nucleic acid bases and their derivatives

The experimental enthalpies of solution Δ_solH_m^∞, van’t Hoff enthalpies of sublimation Δ_s^gH_m⁰ of solid compounds, partial molar volumes V₂⁰, and partial molar heat capacities C_p,2⁰ of aqueous solutions of pyrimidine nucleic acid bases and their derivatives, determined previously and collected here, are discussed in terms of calculated structural parameters. Relations have been established between the calorimetric and volumetric properties. Correlations have been developed to relate both the enthalpies of solvation and the partial molar heat capacities to the polar and apolar parts of the accessible molecular surface areas.     

Rapid and efficient microwave-assisted synthesis of 5-amino-3-aralkoxy(methoxy)amino-1,2,4-oxadiazoles

The microwave-assisted synthesis of 5-amino-3-aralkoxy(methoxy)amino-1,2,4-oxadiazoles starting from N¹-aralkoxy-(methoxy)-N³-cyano-O-phenylisoureas and hydroxylamine is described. N¹-Aralkoxy(methoxy)-N³-cyano-O-phenylisoureas are readily accessible by treatment of diphenyl N-cyanimidocarbonate with O-substituted hydroxylamines.     

Chaetominedione, a new tyrosine kinase inhibitor isolated from the algicolous marine fungus Chaetomium sp.

A marine fungal isolate, identified as Chaetomium sp., was cultivated and found to produce a novel benzonaphthyridinedione derivative, chaetominedione (1). In addition to the known fungal metabolites, 2-furancarboxylic acid (2) and 5-(hydroxymethyl)-2-furancarboxylic acid (3) were obtained. The structures of all the compounds were determined based on extensive spectroscopic measurements (1D and 2D NMR, MS, UV, and IR). The total extract and compound 1 had significant inhibitory activity toward p56^lck tyrosine kinase (18.7% and 93.6% enzyme inhibition at 200 μg/mL, respectively).     

Development of a systematic approach to rapid classification and identification of notoginsenosides and metabolites in rat feces based on liquid chromatography coupled triple time-of-flight mass spectrometry

The present work contributes to the development of a powerful technical platform to rapidly identify and classify complicated components and metabolites for traditional Chinese medicines. In this process, notoginsenosides, the main active ingredients in Panaxnotoginseng, were chosen as model compounds. Firstly, the fragmental patterns, diagnostic product ions and neutral loss of each subfamily of notoginsenosides were summarized by collision-induced dissociation analysis of representative authentic standards. Next, in order to maximally cover low-concentration components which could otherwise be omitted from previous diagnostic fragment-ion method using only single product ion of notoginsenosides, a multiple product ions filtering strategy was proposed and utilized to identify and classify both non-target and target notoginsenosides of P.notoginseng extract (in vitro). With this strategy, 13 protopanaxadiol-type notoginsenosides and 30 protopanaxatriol-type notoginsenosides were efficiently extracted. Then, a neutral loss filtering technique was employed to trace prototype components and metabolites in rats (in vivo) since diagnostic product ions might shift therefore become unpredictable when metabolic reactions occurred on the mother skeleton of notoginsenosides. After comparing the constitute profiles in vitro with in vivo, 62 drug-related components were identified from rat feces, and these components were classified into 27 prototype compounds and 35 metabolites. Lastly, all the metabolites were successfully correlated to their parent compounds based on chemicalome–metabolome matching approach which was previously built by our group. This study provided a generally applicable approach to global metabolite identification for the complicated components in complex matrices.     

Characterization of milled wood lignin and ethanol organosolv lignin from miscanthus

Ethanol organosolv lignin extracted from Miscanthus × giganteus (using the following conditions: T = 190 °C, t = 60 min, sulfuric acid = 1.2% w/w, EtOH/H₂O = 0.65) and milled wood lignin from Miscanthus × giganteus were subjected to a comprehensive structural characterization by ¹³C, ³¹P NMR, FTIR, UV spectroscopies and size exclusion chromatography. The results showed that Miscanthus lignin is an H/G/S type (4%, 52%, 44% respectively) with ∼0.41 β-O-4 linkage per aromatic ring and contains coumarylate linkages (0.1/Ar). It was shown that during organosolv treatment, cleavage of β-O-4 linkages and of ester bond (acetyl and coumaryl residues) was the major mechanisms of lignin breakdown but the process did not significantly change the core of the lignin structure.     

The first quaternary lanthanide(III) nitride iodides: NaM4N2I7 (M=La-Nd)

In attempts to synthesize lanthanide(III) nitride iodides with the formula M₂NI₃ (M=La-Nd), moisture-sensitive single crystals of the first quaternary sodium lanthanide(III) nitride iodides NaM₄N₂I₇ (orthorhombic, Pna2₁; Z=4; a=1391-1401, b=1086-1094, c=1186-1211 pm) could be obtained. The dominating structural features are chains of trans-edge linked [NM₄]⁹⁺ tetrahedra, which run parallel to the polar 2₁-axis [001]. Between the chains, direct bonding via special iodide anions generates cages, in which isolated [NaI₆]^5- octahedra are embedded. The IR spectrum of NaLa₄N₂I₇ recorded from 100 to 1000 cm^-1 shows main bands at υ=337, 373 and 489 cm^-1. With decreasing radii of the lanthanide trications these bands, which can be assigned as an influence of the vibrations of the condensed [NM₄]⁹⁺ tetrahedra, are shifted toward higher frequencies for the NaM₄N₂I₇ series (M=La-Nd), following the lanthanide contraction.