Synthesis and structure of an arylpyran normal, pseudodiacid showing recognition

Abstract  

Oxidation of 1,4-bis(4′-oxo-2′,2′-dimethylpent-2-yl)benzene with hypochlorite produces 1,4-bis(3′-carboxy-2′-methylbut-2-yl)benzene and 3-(4′-carboxyphenyl)-3,3-dimethylpropanoic acid. Cyclization of this mixture forms 3,3,7,7-tetramethyl-1,2,3,5,6,7-hexahydro-s-indacen-1,5-dione, 3,3,7,7-tetramethyl-1,2,3,5,6,7-hexahydro-as-indacen-1,5-dione (5) and 6-carboxy-3,3-dimethyl-1-indanone (6). Ketoacid (6) is converted to the arylpyran pseudoacid 7-carboxy-3-hydroxy-4,4-dimethylisobenzopyran-1-one (7). In the crystal structure of (7), carboxylic acid and the pseudoacid groups each form complementary dimer hydrogen bonds linking the molecules in chains. Contact O···O distances reflect their differing energetics, with pseudoacyl O···O at 2.78(1)Å and carboxylic O···O at 2.62(1)Å.     

Synthesis, structural characterization and thermal properties of three copper(II) complexes based on aryl hydrazide ligands

The thiosemicarbazide and hydrazide Cu(II) complexes, [Cu₃L₂¹(py)₄Cl₂] (1), [Cu(HL²)py] (2) and [Cu(HL³)py] (3), (H₂L¹ = 1-picolinoylthiosemicarbazide, H₃L² = N′-(2-hydroxybenzylidene)-3-hydroxy-2-naphthohydrazide, H₃L³ = 2-hydroxy-N′-((2-hydroxy-naphthalen-1-yl)methylene)benzohydrazide) have been prepared and characterized through physicochemical and spectroscopic methods as well as X-ray crystallography. Complex 1 has a centrosymmetric structure with –N–N– bridged Cu₃ skeleton. Neighboring molecules are linked into a 3D supermolecular framework by π–π stacking interactions, N–H···Cl and C–H···Cl hydrogen bonds. Complexes 2 and 3 have similar planar structures but different dimers formed by concomitant Cu···N and Cu···O interactions, respectively. Solvent accessible voids with a volume of 391 ?³ are included in the structure of complex 2, indicating that this complex is a potential host candidate. Thermogravimetric analysis shows that the three complexes are stable up to 100 °C.     

Two new lead(II) coordination polymer and discrete complex containing bipyridine ligands with different positioned methyl substituents: synthesis,characterization, crystal structure determination,and luminescent properties

Lead(II) coordination polymer [Pb(5,5′-dmbpy)(μ-NO₃)₂] _n (1) and mononuclear complex [Pb(6,6′-dmbpy)(NO₃)₂] (2) (where 5,5′-dmbpy is 5,5′-dimethyl-2,2′-bipyridine and 6,6′-dmbpy is 6,6′-dimethyl-2,2′-bipyridine) were synthesized from reaction of lead(II) nitrate with 5,5′-dmbpy and 6,6′-dmbpy, respectively. Both complexes were thoroughly characterized by elemental analysis, infrared, ¹H and ¹³C NMR, UV–Vis, emission spectroscopy, as well as single-crystal X-ray diffraction. Polymer 1 possesses one-dimensional (1D) chain structure, whilst complex 2 exhibits a discrete complex which provide an extended chain parallel to the [001] direction, via weak intermolecular C–H···O hydrogen bonding. Coordination number of Pb²⁺ in 1 and 2 are 8 and 6, respectively, with the stereochemically active lone pair, resulting in the hemidirected geometry for both complexes. The nitrate anions exhibit a tridentate chelating/bridging mode in 1, and a bi-chelating mode in 2. The supramolecular features in these complexes are guided/influenced by weak directional intermolecular C–H···O hydrogen bonding (1 and 2) together with π–π and C–H···π (1) interactions. The luminescence studies of 1 and 2 confirmed that the position of methyl substituent on 2,2′-bipyridine rings has a profound effect on the fluorescence emissions.     

Four complexes with a bulky carboxylate ligand: syntheses,crystal structures,and luminescent properties

Abstract  

Four complexes of 3,3-diphenylpropanoate (L) and 4,4′-bipyridine as auxiliary bridging ligands were synthesized and characterized, namely [Zn(L)₂(4bpy)(EtOH)₂]_∞ (1), [Co(L)₂(4bpy)(EtOH)₂]_∞ (2), [Ni(L)₂(4bpy)(EtOH)₂]_∞ (3), and [Cu(L)₂(4bpy)(H₂O)]_∞ (4) (4bpy = 4,4′-bipyridine). X-ray single-crystal diffraction analyses show that complexes 1–4 all take one-dimensional (1D) fishbone-like structures incorporating bridging 4bpy ligands. The complexes show different supramolecular frameworks interlinked via intermolecular hydrogen bonds, π···π stacking, and/or C–H···π supramolecular interactions. Complex 3 only has a simple one-dimensional fishbone-like chain, whereas complexes 1 and 2 show two-dimensional supramolecular structures by interchain C–H···O hydrogen bonds. Complex 4 is assembled into two-dimensional layers and then an overall three-dimensional framework by a combination of interchain O–H···O hydrogen bonds and C–H···π supramolecular interactions. The luminescent properties of the ligands and their complexes were investigated.     

Cooperative N–H···N,N–H···O,and O–H···N bonded molecular dimers of two new 3,5-diaryl-1<Emphasis Type="Italic">H</Emphasis>-pyrazoles

Two new 3,5-diaryl-1H-pyrazoles: 3(5)-(4-tert-butylphenyl)-5(3)-(naphthalene-2-yl)-1H-pyrazole (1) and 5-(4-(benzyloxy)phenyl)-3-(furan-2-yl)-1H-pyrazole (2) were synthesized and characterized. Two strong ions peaks [2M]⁺ and [2M + Na]⁺ observed in the ESI–MS spectra are attributed to the dimerization process in solution formed by intermolecular N–H···N hydrogen bonds. The crystal structures have been determined by X-ray crystal structure analysis. Compound 1 exists as a pair of tautomers 1a and 1b, and its dimer [R ₂²(6) motif] is formed by the tautomers 1a and 1b. Compound 2 only exists as a 2a tautomer, and interesting intermolecular N–H···O and O–H···N hydrogen bonds link two pyrazoles and two methanol molecules, leading to the formation of an R ₄⁴(10) dimer motif.     

Synthesis and crystal structures of silver(I) and copper(II) complexes with <Emphasis Type="Italic">p</Emphasis>-xylylene-bridged bipyrazolyl ligands

Two semi-rigid bipyrazolyl ligands, namely 2,3,5,6-tetramethyl-1,4-bis[(3′,5′-dimethyl-1H -pyrazol-4′-yl)methylene]benzene (H₂L) and 2,3,5,6-tetramethyl-1,4-bis[(3′,5′-diphenyl-1H -pyrazol-4′-yl)methylene]benzene (H₂L′), and their Ag(I) and Cu(II) complexes have been prepared and structurally characterized by means of X-ray analysis. In the structures of the metal complexes, namely [Ag₂(H₂L)₂](BF₄)₂·2H₂O (1), [Ag(H₂L)(NO₃)]_n (2), [Cu₂(H₂L)₄(SO₄)₂]·11H₂O (3), and {[Ag(H₂L′)]BF₄}_n (4), the bipyrazoles act as bridging ligands to connect two metal atoms. Complexes 2 and 4 exhibit 1-D polymeric structures, while 1 and 3 are discrete molecules with a rectangular dimer or tetragonal prismatic shapes, respectively. Two different conformations, namely cis and trans, have been observed for these bipyrazolyl ligands.     

Crystallographic and theoretical studies of 4,4′-dimethyl-7,7′-bi([1,2,5]thiadiazolo[3,4-b]pyridylidene)–chloranilic acid (1/1) with intermolecular O–H···N hydrogen bonds and S···O heteroatom interactions

Abstract  The molecular and crystal structure of a 1:1 co-crystal of 4,4′-dimethyl-7,7′-bi([1,2,5]thiadiazolo[3,4-b]pyridylidene)–chloranilic acid, (1), has been determined by X-ray diffraction at the monoclinic space group P2₁/c with cell parameters of a = 8.422(6), b = 7.343(4), c = 16.112(7) ?, β = 104.988(8)°, V = 962.5(10) ?³ and Z = 2. In the crystal structure, two components connect via the intermolecular O–H···N hydrogen bonds [2.804(4) ?] and S···O heteroatom interaction [2.945(3) ?] with R ₂ ²(7) couplings to form a unique and infinite one-dimensional supramolecular tape structure. The calculations of (1) at the HF/6-31G(d), MP2/6-31G(d), and B3LYP/6-31G(d) levels can almost reproduce X-ray geometry. In addition, the distances of the intermolecular O–H···N and S···O interactions by MP2/6-31G(d) and B3LYP/6-31G(d) levels agree well with those in the crystal. The calculated binding energies corrected BSSE and ZPE are −4.487 (HF), −7.473 (MP2), and −5.640 (B3LYP) kcal/mol. The results suggest that the complex (1) is very stable and the dispersion interaction is significantly important for the attractive intermolecular interaction in (1). The NBO analysis has revealed that the n(N) → σ*(O–H) interaction gives the strongest stabilization to the system and the major interaction for the intermolecular S···O contact is n(O) → σ*(S–N). Index Abstract  In the crystal structure of the title compound, the molecules are linked by intermolecular O–H···N hydrogen bonds and short S···O heteroatom interactions with R ₂ ²(7) couplings to construct a unique and infinite one-dimensional supramolecular tape structure.      

Benzenedicarboxylate-modulated zinc(II)-3,5-bis(3-pyridyl)-1H-1,2,4-triazole frameworks: syntheses, structures and luminescent properties

Abstract  

Based on the polydentate ligand 3,5-bis(3-pyridyl)-1H-1,2,4-triazole (3,3′-Hbpt), three coordination compounds [Zn(3,3′-Hbpt)(ip)]·2H₂O (1), [Zn(3,3′-Hbpt)(5-NO₂-ip)]·H₂O (2), and [Zn(3,3′-Hbpt)₂(H₂pm)(H₂O)₂]·2H₂O (3) have been hydrothermally constructed with H₂ip, 5-NO₂-H₂ip and H₄pm as auxiliary ligands (H₂ip = isophthalic acid, 5-NO₂-H₂ip = 5-NO₂-isophthalic acid, H₄pm = pyromellitic acid). Structural analysis reveals that Zn(II) ions serve as four-coordinated, five-coordinated, and six-coordinated connectors in 1–3, respectively, while 3,3′-Hbpt adopts μ-N_py and N_py coordination modes in two typical conformations in these target coordination compounds. Dependently the applied ligand, compounds 1–3 exhibit either 1D channel, cage or chain structures, respectively. In addition, the luminescence properties of 1–3 have been investigated in the solid state at room temperature.     

Synthesis and crystal structures of two isomeric nitro-α-resorcylic acids

Nitration of α-resorcylic acid (3,5-dihydroxybenzoic acid) to 3,5-dihydroxy-2-nitrobenzoic acid (1) and 3,5-dihydroxy-4-nitrobenzoic acid (2), their separation, and crystallization is described. Crystal structures of 1, 1 · 3H₂O, and 2 were determined by X-ray single-crystal diffraction analysis and compared with DFT-calculated structures. An intramolecular hydrogen bond between the nitro group and o-hydroxyl group(s) occurs in all investigated structures. Intermolecular hydrogen bonds and π···π stacking interactions determine the molecular packing. Additionally, N···O interactions have a crucial role in arrangement of the molecules in the crystal structures of 1 and 2. DFT calculations in the gas phase and in the solution reveal that minor product 2 is a more stable regioisomer than 1, the major product in the nitration reaction.     

N–H···O=P hydrogen-bonded dimers as the main structural motif of aminophosphonate diesters

Abstract  

Crystal and molecular structures of three aminophosphonate diesters, diethyl and dibutyl [α-(quinolin-3-ylamino)-N-benzyl]phosphonates (1 and 2) and dibutyl [α-anilino-(quinolin-3-yl)methyl]phosphonate (3) were reported and comparatively discussed. Characteristic structural features for these compounds are strong N–H···O=P hydrogen bonds that connect two organophosphorus molecules in cyclic centrosymmetric dimer. Phosphoryl oxygen forms additional interaction with a C–H donor from the nearby aromatic group. Dimer formation in solution was also confirmed using electrospray ionization mass spectrometry. Mass spectra of six structurally similar aminophosphonate derivatives, 1–3 along with diethyl [α-anilino-(quinolin-3-yl)methyl]phosphonate (4), diethyl and dibutyl [α-anilino-(quinolin-2-yl)methyl]phosphonates (5 and 6) were studied and dimolecular ions [2M + Na]⁺ and [2M + H]⁺ were observed.     

Investigation of desolvation process in lanthanide dinicotinates

The desolvation process in lanthanide pyridine-3,5-dicarboxylates of the formulae [Tb₂pdc₃(dmf)₂]·dmf (1), [Ho₂pdc₃(dmf)₂]·dmf (2), [Erdc₃(dmf)₂]·dmf (3), and [Yb₂pdc₃(dmf)₂]·dmf (4) where pdc-C₅H₃N(COO)₂²⁻, dmf-N,N′-dimethylformamide) has been investigated by means of the TG–DSC, TG–FTIR, IR and XRD methods. Heating of the complexes in the range 30–260 °C lead to evolution of weakly bonded dmf molecules included in the channels as well those directly bonded with lanthanide atoms. The kinetic analysis revealed a multistep desolvation pattern.     

A new biphenyl derivative from an unidentified marine fungus E33

A new biphenyl derivative 3,5′-dihydroxy-4′,5-dimethoxy-2′-methyl-[1,1′-biphenyl]-2-carboxylic acid methyl ester (1), was isolated from the culture broth of a fungus isolated from the rhizosphere soil of mangrove root on the South China Sea. The structure of 1 was determined by comprehensive spectroscopic methods, primarily 2D NMR techniques. Published in Khimiya Prirodnykh Soedinenii, No. 2, pp. 128–129, March–April, 2008.     

Studies on mono- and dinuclear bisoxime copper complexes with different coordination geometries

Two new mono- and dinuclear Cu(II) complexes, namely [CuL¹]·0.5H₂O (1) and [(Cu₂(L²)₂)(DMF)]·0.5DMF (2) (H₂L¹ = 1,2-bis{[(Z)-(3-methyl-5-oxo-1-phenyl-1H-pyrazolidin-4(4H)-yl)(phenyl)]methylene-aminooxy}ethane; H₂L² = 1,3-bis{[(Z)-(3-methyl-5-oxo-1-phenyl-1H-pyrazolidin-4(4H)-yl)(phenyl)] methyleneaminooxy}propane), have been synthesized and characterized by X-ray crystallography. The unit cell of complex 1 contains two crystallographically independent but chemically identical [CuL¹] molecules and one crystalline water molecule, showing a slightly distorted square-planar coordination geometry and forming a wave-like pattern running along the a-axis via hydrogen bonding and π···π stacking interactions. Complex 2 has a dinuclear structure, comprising two Cu(II) atoms, two completely deprotonated phenolate bisoxime (L²)²⁻ moieties (in the form of enol), and both coordinated and hemi-crystalline DMF molecules. Complex 2 has square-planar and square-pyramidal geometries around the two copper centers, whose basic coordination planes are almost perpendicular and form an infinite three-dimensional supramolecular network structure involving intermolecular C–H···N, C–H···O, and C–H···π(Ph) hydrogen bonding and π···π stacking interactions of neighboring pyrazole rings.     

Different coordination modes and supramolecular aggregations in copper(II) pentane-2,4-dionato compounds with 2-pyridone and 3-hydroxypyridine

Abstract  

Copper(II) bis(pentane-2,4-dionato-κ² O,O′) compounds with 2-pyridone (1) and 3-hydroxypyridine (2) were prepared by the reaction of bis(pentane-2,4-dionato-κ² O,O′)copper(II) with selected ligands. The coordination of Cu(II) in both compounds is square pyramidal with the fifth coordination site occupied by the carbonyl oxygen atom of the 2-pyridone ligand in 1 and by the nitrogen atom of 3-hydroxypyridine in 2. The X-ray crystallographic studies revealed different crystal aggregation influenced by the ability of the 2-pyridone ligand to act as a hydrogen bond donor and acceptor, and 3-hydroxypyridine acting only as a hydrogen bond donor. Intermolecular N–H···O hydrogen bonding forms dimers in 1 and infinite chains in 2. Three-dimensional aggregation is achieved by π–π interactions and C–H···π (arene) hydrogen bonding.     

DFT studies and AIM analysis of intramolecular N–H···O hydrogen bonds in 3-aminomethylene-2 methoxy-5,6-dimethyl-2-oxo-2,3-dihydro-2λ5-[1,2]oxaphosphinin-4-one and its derivatives

The intramolecular N–H···O hydrogen bonds in 3-aminomethylene-2 methoxy-5,6-dimethyl-2-oxo-2,3-dihydro-2λ⁵-[1,2]oxaphosphinin-4-one and its derivatives (F, H, Li, -BeH) were studied by DFT (density functional theory) methods. The results of calculations were obtained at B3LYP/6-311++G(d,p) level on model species, with the resonance-assisted hydrogen bonds (RAHB). Topological parameters such an electron density, its Laplacian, kinetic electron energy density, potential electron energy density, and total electron energy density at the bond critical points (BCP) of H···O/N–H contact bonds from Bader’s ‘Atoms in molecules’ (AIM) theory were analyzed in details. The energy of the N–H···O interactions studied here was found rather weak (E _HB = 2.53–12.08 kcal/mol). The results of AIM ellipticity indicated π-delocalization over all six atoms within ring.     

Temperature-dependent synthesis, crystal structures, characterizations, and DFT calculations of two new copper(II) complexes with p-fluorobenzoic acid and 2,2′-bipyridine ligands

Two new copper(II) complexes, [Cu(p-FBA)₂(2,2′-bpy)]·(H₂O) (1) and [Cu(p-FBA)(2,2′-bpy)₂]·(p-FBA)₂ (2) {p-FBA = p-fluorobenzoic acid, 2,2′-bpy = 2,2′-bipyridine} have been obtained from an identical starting mixture using temperature as the only independent variable and characterized by X-ray single crystal diffraction as well as with infrared spectroscopy, elemental analysis, and thermogravimetric analysis. The results reveal that 1 has 1D infinite chain structure formed by O–H···O hydrogen bonds, while 2 features a 0D structure. Additionally, there exist C–H···O hydrogen bonds and π–π stacking interactions in 1, forming 2D supramolecular structure. Furthermore, density functional theory (DFT) calculations of the structures, stabilities, orbital energies, composition characteristics of some frontier molecular orbitals and Mulliken charge distributions of the [Cu(p-FBA)₂(2,2′-bpy)] of 1 and [Cu(p-FBA)(2,2′-bpy)₂]⁺ cation of 2 were performed by means of Gaussian 03W package and taking B3LYP/lanl2dz basis set.     

Crystal structural characterization of three chlorosalicylato titanocene compounds

Abstract  Three chlorosalicylato titanocene compounds, namely [(MeCp)₂Ti(O,O′)(OCC₆H₃-5-Cl)]₂ (1), [(MeCp)₂Ti(O,O′)(OCC₆H₂-3,5-Cl₂)] (2) and [(MeCp)₂Ti(O,O′)(OCC₆H-3,5,6-Cl₃)] (3) have been synthesized via the reaction of (MeCp)₂TiCl₂ [MeCp = η⁵-(CH₃)C₅H₄] with the corresponding substituted chlorosalicylic acids in aqueous-organic systems in high yields and characterized by elemental analysis, IR and ¹H NMR spectra. Single-crystal X-ray diffraction analysis shows that geometries at titanium (IV) atoms are distorted tetrahedrons and the exhibited frameworks are constructed through weak interactions, which are H-bonding, π–π stacking and C–H···π interactions. Additional weak interactions, such as Cl···Cl interactions in compound 1, are also present, which help to form and stabilize crystalline materials. It is noticeable that the discriminating framework structures of three compounds due to their weak interactions existing conspicuous changes which result from the number of chlorine atoms on substituted chlorosalicylates. Graphical Abstract  Three to four coordinated chlorosalicylato titanocene compounds, [(MeCp)₂Ti(O,O′)(OCC₆H₃-5-Cl)]₂ (1), [(MeCp)₂Ti(O,O′)(OCC₆H₂-3,5-Cl₂)] (2) and [(MeCp)₂Ti(O,O′)(OCC₆H-3,5,6-Cl₃)] (3) have been synthesized in aqueous-organic system in high yields. Single-crystal X-ray diffraction analysis shows that geometries at titanium (IV) atoms are distorted tetrahedrons and the exhibited frameworks are constructed through weak interactions. The number of chlorine atoms on substituted chlorosalicylates has an effect on their framework structures.      

X-ray crystal structures of halogen containing nucleobase derivatives in unsolvated and DMSO solvated forms

A series of halogenated nucleobase derivatives 1–4 is reported to yield solvent-free (2) and DMSO solvated crystals (1, 3, 4) on the crystallization from DMSO with one of them (4) containing an additional molecule of water. The molecular and crystal structures are described and comparatively discussed with reference to previous results on related compounds. The molecule of 1 is planar, molecules of 2 and 3 show syn alignment with reference to the heterocyclic ring and common C2′-endo conformation of the ribose residue, while 4 is also syn aligned but C4′-exo in the sugar conformation. The packing structures reveal typical aggregations created via networks of hydrogen bonds. These involve conventional N–H···N, N–H···O and O–H···O interactions between nucleobase and ribose units as well as solvent molecules, additionally supported by weak C–H···O contacts but excluding the participation of halogen···halogen interactions as well as halogen···heteroatom contacts in the supramolecular structure formation.     

Syntheses and crystal structures of cobalt(II) and zinc(II) complexes with 4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate

Abstract Sodium 4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate (1) is synthesized by the sulfonation of 6-hydroxybiochanin A and its structure is characterized by elemental analysis, ¹H-NMR, and IR spectroscopy. It is assembled with cobalt(II) or zinc(II), hexaquacobalt(II) bis(4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate) tetrahydrate (2) and hexaquazinc(II) bis(4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate) tetrahydrate (3) are obtained and characterized by IR spectroscopy. Simultaneously, their three-dimensional structures are determined by single-crystal X-ray analysis. It turns out that 2 and 3 are isomorphous and crystallize in the triclinic crystal system, space group P-1. Hydrophilic regions are defined by O–H···O hydrogen bonds involving the coordinated water molecules, the included water molecules, and sulfonate groups. Aromatic π...π stacking interactions assemble the isoflavone skeletons into columns and these columns formed hydrophobic regions. The sulfonate group is an important bridge as a structural link between the hydrophilic regions and the hydrophobic regions. Hydrogen bonds, π...π stacking interactions and the electrostatic interactions assemble 2 and 3 into three-dimensional network structures. Graphical abstract Sodium 4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate (1) is synthesized and assembled with cobalt(II) or zinc(II). Hexaquacobalt(II) bis(4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate) tetrahydrate (2) and hexaquazinc(II) bis(4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate) tetrahydrate (3) are obtained and determined by single-crystal X-ray analysis. It turns out that 2 and 3 are isomorphous and assembled into three-dimensional network structures, characterized by hydrophilic regions defined by hydrogen bonds involving the coordinated water molecules, the included water molecules, and the sulfonate groups and by hydrophobic columns, formed by the isoflavone skeletons, interacting through π...π stacking interactions.