Theoretical evaluation to improve the performance of composite wax powder: cooperativity effects involving the strong Na+···π/σ and weak hydrogen-bonding interactions in the complex of graphene oxide with Na+ and CH4

ABSTRACT

To provide a reasonable design scheme to improve the performance of composite wax powder, the ternary complex Na⁺···graphene oxide (GO)···CH₄ was selected as a model system to evaluate the cooperativity effect between the Na⁺···σ/π and H-bonding interactions in the composite wax powder doped with GO at the M06-2X/6-311++G(2d,p) and MP2/6-311++G(2d,p) levels. The cooperativities in GO···(CH₄)_n (n?=?1～10) and thermodynamic cooperativity effects in Na⁺···GO···CH₄ were also investigated. Although the changes of the absolute values of H-bonding interactions were slight, from those of relative values, the influence of the Na⁺···π or Na⁺···O interaction on the C–H···π, O–H···C or C–H···O interaction was notable upon the formation of ternary systems. The anti-cooperativity effect was found in the cyclic structure, while the cooperativity effect appeared in the linear conformation. The Na⁺···σ/π and H-bonding interactions as well as cooperativities in Na⁺···GO···CH₄ were stronger than those in Na⁺···coronene···CH₄. The formation of Na⁺···GO···CH₄ is a thermodynamic cooperativity process driven by the enthalpy change. Therefore, it could be inferred that, when graphite powder or carbon black was replaced by GO, the compatibilities could be strengthened among various components, and thus the performance of casting moulds could be improved. Atoms-in-molecules (AIM) and reduced density gradient (RDG) analyses confirmed the cooperativity effect and revealed the nature of the improved performance of composite wax powder with GO. The GO···(CH₄)_n (n?=?1～3) are positively cooperative, while the negative cooperativity is shown when n?=?4～10.     

Investigation of cation–anion interaction in 1‐(2‐hydroxyethyl)‐3‐methylimidazolium‐based ion pairs by density functional theory calculations and experiments

Gas‐phase structure, hydrogen bonding, and cation–anion interactions of a series of 1‐(2‐hydroxyethyl)‐3‐methylimidazolium ([HOEMIm]⁺)‐based ionic liquids (hereafter called hydroxyl ILs) with different anions (X = [NTf₂]^–, [PF₆]^–, [ClO₄]^–, [BF₄]^–, [DCA]^–, [NO₃]^–, [AC]^– and [Cl]^–), as well as 1‐ethyl‐3‐methylimizolium ([EMIm]⁺)‐based ionic liquids (hereafter called nonhydroxyl ILs), were investigated by density functional theory calculations and experiments. Electrostatic potential surfaces and optimized structures of isolated ions, and ion pairs of all ILs have been obtained through calculations at the Becke, three‐parameter, Lee–Yang–Parr/6‐31 + G(d,p) level and their hydrogen bonding behavior was further studied by the polarity and Kamlet–Taft Parameters, and ¹H‐NMR analysis. In [EMIm]⁺‐based nonhydroxyl ILs, hydrogen bonding preferred to be formed between anions and C2–H on the imidazolium ring, while in [HOEMIm]⁺‐based hydroxyl ILs, it was replaced by a much stronger one that preferably formed between anions and OH. The O–H···X hydrogen bonding is much more anion‐dependent than the C2–H···X, and it is weakened when the anion is changed from [AC]^– to [NTf₂]^–. The different interaction between [HOEMIm]⁺ and variable anion involving O–H···X hydrogen bonding resulted in significant effect on their bulk phase properties such as ¹H‐NMR shift, polarity and hydrogen‐bond donor ability (acidity, α). Copyright © 2011 John Wiley & Sons, Ltd.     

The influence of halogen-bonding cooperativity on the hydrogen and lithium bonds: an ab initio study

ABSTRACT

Ab initio calculations are carried out to study linear NCH···(NCX)_1–5 and NCLi?…?(NCX)_1–5 clusters (X?=?F, Cl, Br). The aim is to study the influence of halogen-bonding cooperativity on the strength and bonding properties of hydrogen or lithium bond. Particular attention is given to parameters such as binding distances, interaction energies and cooperative energies in these systems. According to our results, the halogen-bonding cooperativity between the NCX molecules has an enhancing effect on the strength of hydrogen and lithium bonds, with an increase of 0.33–0.93 and 0.19–0.43?kcal/mol in NCH···(NCX)_n and NCLi···(NCX)_n, respectively. The enhancing effect of halogen bond on the hydrogen and lithium bond is dependent on the nature of halogen atom, and increases as X?=?F?相似文献   

A combined experimental and theoretical study on p‐sulfonatocalix[4]arene encapsulated 7‐methoxycoumarin

Host‐guest interactions are essential in chemistry, biology, medicine and environmental science. In this combined experimental and theoretical contribution, the encapsulation of 7‐methoxycoumarin (herniarin, 7MC) with p‐sulfonatocalix[4]arene (p‐SC4) is studied using absorption and fluorescence spectroscopy, cyclic voltammetry and computational approaches. The 1:1 stoichiometry is confirmed using Job's plot. Our results show that the keto group of 7MC is the main source for electrochemical conversion of this complex. The excited state 7MC radiative decay is studied using time‐correlated single photon counting technique. The computed UV‐Vis absorption spectra for this complex at gas phase and solvent are online with the experimental spectra. Moreover, we determined the binding energy and the binding constant of the 7MC‐p‐SC4 complex. Density functional theory computations revealed that stabilization of the complex formed by p‐SC4 and 7MC is due to weak noncovalent and dispersive types of interactions. A comparison with encapsulation of amino acids by p‐SC4 is also conducted. Finally, we show that the flexibility of p‐SC4 and the weak nature of its interaction with 7MC are on the origin of the reversibility of encapsulation, which is mandatory for applications such as drug delivery.     

Electron density characteristics and charge transfer effect of hydrogen bond O–H···Pt(II): atoms in molecules study and natural bond orbital analysis

In this report, we extended the works of Rizzato et al. [Angew. Chem. Int. Ed. 49, 7440 (2010)] on the nature of O–H···Pt hydrogen bond in trans-[PtCl₂(NH₃)(N–glycine)]·H₂O(1·H₂O) complex, by computational study of O–H···Pt interaction in [NBu₄][Pt(C₆F₅)₃(8-hydroxyquinaldine)], with emphasis on charge transfer effect in this interaction of platinum(II) and hydrogen atom. According to the crystallographic geometry reported by José María Casas et al., [NBu₄][Pt(C₆F₅)₃(8-hydroxyquinaldine)] possesses one O–H···Pt hydrogen bridging interaction, similar to the case in trans-[PtCl₂(NH₃)(N–glycine)]·H₂O(1·H₂O) complex. On the basis of topological criteria of electron density, we characterised this O–H···Pt interaction. Charge transferred between platinum(II) and σ^*_O–H orbital in this complex was calculated by using NBO method. The stabilised energy associated to charge transfer was estimated using a direct proportionality, that is 2–3 eV per electron transferred. Charge transfer effects in O–H···Pt hydrogen bonds were studied for these two complexes. Our results indicate that the interaction of O–H···Pt is closed–shell in nature with significant charge transfer, and that charge transfer effect is not negligible in the interaction of O–H···Pt. The second conclusion is different from the result of Rizzato et al.     

Binary mixture of p‐methylbenzaldehyde with polar and nonpolar solvents

In this work, a combined theoretical and experimental study of binary mixture of liquid p‐methylbenzaldehyde (PMBz) is reported using ab initio calculations as well as Raman and IR spectroscopies. The purpose of this study was twofold: firstly, to describe the interaction of PMBz in terms of bonding energies and preferred geometries; and secondly, to characterize the spectroscopic effects on the vibrational modes of PMBz in the binary mixture of different polar and nonpolar solvents. The three vibrational modes, namely, carbonyl stretching, ν(C CH₃) and aldehydic (C H) vibrations have been analyzed in all the three solvents in different concentrations. The dependence of Raman linewidth on the concentration of PMBz of these modes was also taken into account. By analyzing the peak position and linewidth of these modes, it is seen that the solute–solvent interaction is stronger in BuOH and 1,2 dichloroethane (DCE) because of the hydrogen‐bonding interaction between these molecules. The formation of C H···O hydrogen bonds in liquid p‐methylbenzaldehyde is also investigated by Gaussian fitting. The ab initio calculations suggest several possible dimer configurations. Copyright © 2008 John Wiley & Sons, Ltd.     

Does the five‐member hydrogen bond ring in quinoline carboxamides exist?

The presence of intramolecular NHN hydrogen bond in 4‐R‐quinoline‐2‐(N‐R′‐carboxamides) was investigated by AIM methodology. Values of electron density, elipticity, and total energy density at the bond critical point of H···N in amides were compared with respective values of H···O in their N‐oxides. Copyright © 2008 John Wiley & Sons, Ltd.     

Theoretical investigation of the backbone···π and π···π stacking interactions in substituted-benzene||3-methyl-2′-deoxyadenosine: a perspective to the DNA repair

The π-stacking effects of substituted benzenes on the N-glycosidic bond strength of 3-methyl-2'-deoxyadenosine (3-MDA) were studied by quantum mechanical calculations. Although all substituents enhance the stacking interactions, enhancement is higher for the electron-donating (ED) substituents. When the overall binding energy is separated into the π···π (ΔE_π···π) and backbone···π (ΔE_bb···π) contributions, the ED and electron-withdrawing (EW) substituents increase those contributions, respectively. Both the ED and EW substituents decrease the distance between the centres of stacked rings, while the EW ones increase the N-glycosidic bond length. The electron charge density calculated at the C--N bond critical point (ρ_C–N) is in linear correlation with the backbone···π interaction, not with the π···π interaction. This study also shows that the charge transfer from X-Ben to 3-MDA is in linear correlation with the ΔE_π···π and the change in the charge on the sugar ring is in better accordance with the backbone···π interaction. The N7 proton affinity (PA_N7), with a key role in the depurination process, is highly affected by the π···π interactions. Thus, both interactions must be considered because of the balance between the backbone···π and π···π contributions in these biomolecular systems.     

Evolution of excess electron binding motifs under both internal‐push (from exo C–F bonds) and external‐push (from endo C–F bonds) electron effects in endohedral metallofullerenes with endo C–F bonds

How does the endo C–F bond influence the excess electron binding motif? For lithium‐doped endohedral perfluorofullerenes with endo C–F bonds, under both internal‐push (from exo C–F bonds) and external‐push (from endo C–F bonds) electron effects, the singly occupied molecular orbital electron cloud of the sphere‐like Li···F₈@C₆₀F₅₂ (D₂) is partially dispersed within the σ_p–s antibonding orbital of endo C–F bonds and the space between C^δ+–F_endo^δ– double electric layers, which makes Li···F₈@C₆₀F₅₂ have partial excess electron (electride characteristics) and partial lithium salt characteristics, while in the tube‐like Li···F₂@C₆₀F₅₈ (C_s), as the Li is changing from approaching F to keeping away from F and to approaching another one, the singly occupied molecular orbital electron cloud is mainly dispersed from within the p orbital of the short endo C–F bond to within the middle of the two F atoms and again to within the p orbital of the short endo C–F bond, which indicates an evolution from lithium salt characteristic to excess electron characteristic, and again to lithium salt characteristic. Copyright © 2012 John Wiley & Sons, Ltd.     

Analysis of hydrogen bonding and weak interactions in the crystal structure of (E)-N-(4-ethylphenyl)-2-(4-hydroxybenzylidene)thiosemicarbazone: experimental and theoretical studies

Hydrogen-bonding interactions play an important role in the rational design of crystal systems with desirable architectures. The novel thiosemicarbazone derivative described herein, namely (E)-N-(4-ethylphenyl)-2-(4-hydroxybenzylidene)thiosemicarbazone, C₁₆H₁₇N₃OS, (I), was prepared and characterised by ¹H NMR, IR and single-crystal X-ray crystallography techniques. The compound is arranged in the lattice by O–H···S and N–H···S bonded polymeric ribbons that extend along the crystal b-axis, and the intermolecular N–H···S hydrogen bonds formed R2 2(8) ring motifs. More importantly, C–H···π interaction stabilises the supramolecular structure of (I). Hirshfeld surface and their associated two-dimensional fingerprint plot analyses are presented to illustrate the supramolecular connectivity in the solid state. The result shows that the short H···H contacts is dominated in the total Hirshfeld surface. As well as we report on n→π* interactions in thiosemicarbazone derivatives by using the reduced density gradient function and natural bond orbital analyses. Besides, molecular electrostatic potential (MEP) and frontier molecular orbital (FMO) analysis of the title compound are also investigated by theoretical calculations.     

Long distance structural consequences of H‐bonding: the case of complexes of para‐substituted phenol derivatives

H‐bonded complexes of p‐X‐PhOH/p‐X‐PhO^? with fluoride and hydrofluoric acid (X = OH, H, NO₂) were subject of optimization (by means of B3LYP/6‐311+G**) for gradually changed O···F distance from d_O···F = 4.0 Å down to (i) the distance of the proton transfer from the hydroxyl group to fluoride leading to O^?···HF interaction and (ii) fully optimized system (O^?···HF type). In this way, we simulate gradual changes of H‐bond strength estimating simultaneously the energy of interaction, E_int, energy of deformation, E_def, and the binding energy, E_tot. The obtained geometrical parameters allow us to show that H‐bond formation causes substantial changes in geometry, even at so distant parts of the system as the ring and bond length in para‐substituents (OH and NO₂). All these changes are monotonically dependent on interaction and deformation energies. Copyright © 2009 John Wiley & Sons, Ltd.     

Prediction and characterisation of a chalcogen···π interaction with acetylene as a potential electron donor in XHS···HCCH and XHSe···HCCH (X = F,Cl, Br,CN, OH,OCH3, NH2, CH3) σ-hole complexes

It is well-known that many covalently bonded atoms of group VI have specific positive regions of electrostatic potential (σ-holes) through which they can interact with Lewis bases. This interaction is called ‘chalcogen bond’ by analogy with halogen bond and hydrogen bond. In this study, ab initio calculations are performed to predict and characterise chalcogen···π interactions in XHS···HCCH and XHSe···HCCH complexes, where X = F, Cl, Br, CN, OH, OCH₃, NH₂, CH₃. For the complexes studied here, XHS(Se) and HCCH are treated as a Lewis acid and a Lewis base, respectively. The CCSD(T)/aug-cc-pVTZ interaction energies of this type of σ-hole bonding range from ?1.18 to ?4.83 kcal/mol. The calculated interaction energies tend to increase in magnitude with increasing positive electrostatic potential on the extension of X–S(Se) bond. The stability of chalcogen···π complexes is attributed mainly to electrostatic and correlation effects. The nature of chalcogen···π interactions is unveiled by means of the atoms in molecules, natural bond orbital, and electron localisation function analyses.     

On difference of properties between organic fluorine hydrogen bond C–H···F–C and conventional hydrogen bond

The existence of C–H···F–C hydrogen bonds in the complexes of trifluoromethane and cyclic molecule (oxirane, cyclobutanone, dioxane, and pyridine) has been experimentally proven by Caminati and co-workers. This study presents a theoretical investigation on these C–H···F–C hydrogen bonds at B97D/6-311++G^** and MP2/6-311++G^** levels, in terms of C–H vibrational frequency shifts, atoms in molecules characteristics, and the bonding feature of C–H···F–C hydrogen bonds. It is found that in three important aspects, there are significant differences in properties between C–H···F–C and conventional hydrogen bonds. The C–H···F–C hydrogen bonds show a blueshift in the C–H vibrational frequencies, instead of the X–H normal redshift in X–H···Y conventional hydrogen bonds. The natural bond orbital (NBO) analyses show that σ and p types of lone pair orbitals of the F atom to an antibonding σ^*_H–C orbital form a dual C–H···F–C hydrogen bond. Such a dual hydrogen bonding leads to the proton acceptor directionality of the C–H···F–C hydrogen bond softer. Our studies also show that the Laplacian of the electron density (▽²ρ_BCP) is not always a good criterion for hydrogen bonds. Therefore, we should not recommend the use of the Laplacian of the electron density as a criterion for C–H···F–C hydrogen bonds.     

XRD studies,vibrational spectra,and molecular structure of 1H‐imidazo [4,5‐b]pyridine based on DFT quantum chemical calculations

The molecular structures and vibrational properties of 1H‐imidazo[4,5‐b]pyridine in its monomeric and dimeric forms are analyzed and compared to the experimental results derived from the X‐ray diffraction (XRD), infrared (IR), and Raman studies. The theoretical data are discussed on the basis of density functional theory (DFT) quantum chemical calculations using Lee–Yang–Parr correlation functional (B3LYP) and 6‐31G(d,p) basis. This compound crystallizes in orthorhombic structure, space group Pna2₁(C_2v⁹) and Z = 4. The planar conformation of the skeleton and presence of the N H···N hydrogen bond was found to be characteristic for the studied system. The temperature dependence of IR and Raman modes was studied in the range 4–294 K and 8–295 K, respectively. The normal modes, which are unique for the imidazopyridine derivatives are identified. Copyright © 2009 John Wiley & Sons, Ltd.     

Geometry‐based analysis of azulene and azulene‐like systems with H‐ or Li‐bonding

B3LYP/6–311+G** optimization was carried out for azulene and its analogs, in which CH? CH? CH fragment was replaced with O···X···O (X = H or Li). π‐electron delocalization in four possible derivatives with H‐bonding and three possible derivatives with Li‐bonding was described by the use of HOMA index. All derivatives with Li‐bonding exhibit high π‐electron delocalization similar to that found for azulene. Among four H‐bonded systems, two exhibit lower π‐electron delocalization (HOMA < 0.39) and higher total electron energy than the other two derivatives. Copyright © 2007 John Wiley & Sons, Ltd.     

Chalcogen bonds tuned by an N–H···π or C–H···π interaction: investigation of substituent,cooperativity and solvent effects

In the present work, ab-initio calculations are performed to investigate cooperativity effects between chalcogen bond and H···π interactions in XHY···NCH···C₆H₆ and XHY···CNH···C₆H₆ complexes, where X = F, Cl, Br, CN, NC, and Y = S, Se. The nature of these interactions and the mechanism of cooperativity are studied by means of quantum theory of atoms in molecules, noncovalent interaction index, many-body analysis of interaction energy and electron density shift analysis. For each ternary complex, the shortening of the Y···N(C) distance is more pronounced than that of the H···π. The cooperative energies of these complexes are all negative which demonstrate a positive cooperativity between the Y···N(C) and H···π interactions. The many-body analysis of interaction energy reveals that the two-body energy term has the largest contribution to the total interaction energies of ternary complexes. A good linear correlation is established between the three-body energy and cooperative energy values in the ternary systems. The cooperative energies of XHY···CNH···C₆H₆ complexes indicate a larger sensitivity on the polarity of solvent than XHY···NCH···C₆H₆ ones.     

NIR‐FT Raman and FT‐IR spectral investigations of the nonlinear optical chromophore p‐bromoacetanilide

Vibrational spectral analysis of the hydrogen‐bonded nonlinear optical (NLO) material p‐bromo acetanilide (PBA) was carried out using NIR‐FT‐Raman and FT‐IR spectroscopy. Ab initio molecular orbital computations were performed at HF/6‐31G (d) level to derive equilibrium geometry, vibrational wavenumbers, intensities and first hyperpolarizability. The lowering of the imino stretching wavenumbers suggests the existence of strong intermolecular N H···O hydrogen bonding, which was substantiated by the natural bond orbital (NBO) analysis. The vibrational spectra confirm that the charge‐transfer interaction between the  NHCOCH₃ group and—Br through phenyl ring is responsible for simultaneous strong IR and Raman activation of the ring mode 8a. Vibrational analysis indicates that the lowering of stretching wavenumbers of methyl group due to electronic effects simultaneously caused by induction and hyperconjugation is due to the presence of the oxygen atom. The presence of blue‐shifting H‐bonds of CH stretching wavenumbers, simultaneous activation of carbonyl stretching mode, the strong activity of low‐wavenumber H‐bond stretching vibrations and the role of intramolecular charge transfer in making the molecule NLO active have been analyzed on the basis of the vibrational spectral features. Copyright © 2007 John Wiley & Sons, Ltd.     

Hydrogen‐bonded complexes of sulfonamides and thioamides with DMF: FT‐IR and DFT study,NBO analysis

The structure of H‐complexes of dimethylformamide (DMF) with N‐(2,2,2‐trichloro‐1‐hydroxyethyl)‐p‐toluenesulfonamide (1), N‐[1‐(4‐chlorophenylsulfonylamino)‐2,2,2‐trichloro)ethyl]dithiooxamide (2), N,N'‐bis[2,2‐dichloro‐1‐(4‐chlorophenylsulfonylamino)‐2‐phenylethyl]ethanebis(thioamide) (3) and N,N'‐bis[2,2,2‐trichloro‐1‐(phenylsulfonylamino)ethyl]ethanebis(thioamide) (3a) as proton donors was investigated using Fourier transform infrared spectroscopy and Density Functional Theory calculations. According to calculations, the interaction of DMF with the sulfonamide and thioamide NH groups in the complexes strongly affects the intramolecular H‐bonding in 1–3. From the natural bond orbital analysis, complexation with DMF strongly decreases the energy of the intramolecular N?H · · · S = C bonds, up to their rupture. Variation of the strength of the intra‐ and intermolecular H‐bonds in the complexes is consistent with the calculated frequencies of the NH and OH stretching vibrations, and the analysis of the corresponding bands in the IR spectra allows to suggest the preferable structure of the formed H‐complexes. Copyright © 2013 John Wiley & Sons, Ltd.     

A novel Raman spectroscopic approach to identify polymorphism in leflunomide: a combined experimental and theoretical study

Polymorphism is an important characteristic which affects the activity, solubility and other physical properties of a compound and can be induced by varying temperature, pressure and solvent. The presence and conversion of α to β polymorphic forms of an anti‐rheumatic drug leflunomide have been studied by temperature‐dependent and in situ Raman observations. Both α and β polymorphs were found to co‐exist in the temperature interval 367–372 K. The α form alone exists below 367 K and the β form alone above 373 K. The CO stretching band clearly demonstrates the α → β conversion because of breaking of N–H···O bond and formation of N–H···N bond. On cooling the Raman spectra suggest the irreversibility of this conversion. Thermodynamic stability, crystal parameters and surface morphology of both forms in the leflunomide powder used for the present study have been verified by differential scanning calorimetry, X‐ray powder diffraction and scanning electron microscopy. Copyright © 2015 John Wiley & Sons, Ltd.     

Synthesis of novel bis(β‐cyclodextrin)s linked with aromatic diamine and their molecular recognition with model substrates

Novel β‐cyclodextrin (β‐CD) dimers with aromatic diamine linkers, 1,3‐(aminomethyl)‐benzylamine‐bridged bis(6‐amino‐6‐deoxy‐β‐CD) (2) , 4,4′‐diaminodiphenylmethano‐bridged bis(6‐amino‐6‐deoxy‐β‐CD) (3) , and 4,4′‐ ethylenedianiline‐bridged bis(6‐amino‐6‐deoxy‐β‐CD) (4) , were synthesized. The inclusion complexation behaviors of these compounds, together with 4,4′‐aminophenyl ethyl‐bridged bis(6‐amino‐6‐deoxy‐β‐CD) (5) , with substrates such as acridine red (AR), neutral red (NR), ammonium 8‐anilino‐1‐naphthalenesulfonate (ANS), sodium 2‐(p‐toluidinyl) naphthalenesulfonate (TNS), rhodamine B (RhB), and brilliant green (BG), were investigated by ultraviolet, fluorescence, circular dichroism, and 2D NMR spectroscopy. The results indicated that the two linked CD units cooperatively bound to a guest, and the molecular binding affinity toward substrates, especially curved guest ANS and linear guests such as NR and AR, was increased. The linker length between two CD units played a crucial role in the molecular recognition of the hosts with guest dyes. The binding constants of the hosts for AR, TNS, ANS, and RhB decreased with increasing linker length in hosts 2‐4 . Moreover, structurally similar hosts 3 and 5 exhibited very different binding behavior for the guests. Host 5 showed much higher Ks values toward positively charged guests and lower Ks toward negatively charged guests than host 3 . The 2D NMR spectra of hosts 3 and 5 with RhB were acquired to understand the binding difference between 3 and 5 . The molecular binding ability and selectivity of model substrates by these hosts were sufficiently investigated to reveal not only the cooperative contributions of the linker group and CD cavities upon inclusion complexation with dye guest molecules, but also the controlling factors for the molecular selective binding. Copyright © 2008 John Wiley & Sons, Ltd.