The X-ray absorption spectroscopic model of the copper(II) imidazole complex ion in liquid aqueous solution: a strongly solvated square pyramid

Cu K-edge extended X-ray absorption fine structure (EXAFS) and Minuit X-ray absorption near-edge structure (MXAN) analyses were combined to evaluate the structure of the copper(II) imidazole complex ion in liquid aqueous solution. Both methods converged to the same square-pyramidal inner coordination sphere [Cu(Im)(4)L(ax)](2+) (L(ax) indeterminate) with four equatorial nitrogen atoms at EXAFS, 2.02 ± 0.01 ?, and MXAN, 1.99 ± 0.03 ?. A short-axial N/O scatterer (L(ax)) was found at 2.12 ± 0.02 ? (EXAFS) or 2.14 ± 0.06 ? (MXAN). A second but very weak axial Cu-N/O interaction was found at 2.9 ± 0.1 ? (EXAFS) or 3.0 ± 0.1 ? (MXAN). In the MXAN fits, only a square-pyramidal structural model successfully reproduced the doubled maximum of the rising K-edge X-ray absorption spectrum, specifically excluding an octahedral model. Both EXAFS and MXAN also found eight outlying oxygen scatterers at 4.2 ± 0.3 ? that contributed significant intensity over the entire spectral energy range. Two prominent rising K-edge shoulders at 8987.1 and 8990.5 eV were found to reflect multiple scattering from the 3.0 ? axial scatterer and the imidazole rings, respectively. In the MXAN fits, the imidazole rings took in-plane rotationally staggered positions about copper. The combined (EXAFS and MXAN) model for the unconstrained cupric imidazole complex ion in liquid aqueous solution is an axially elongated square-pyramidal core, with a weak nonbonded interaction at the second axial coordination position and a solvation shell of eight nearest-neighbor water molecules. This core square-pyramidal motif has persisted through [Cu(H(2)O)(5)](2+), [Cu(NH(3))(4)(NH(3),H(2)O)](2+), (1, 2) and now [Cu(Im)(4)L(ax))](2+) and appears to be the geometry preferred by unconstrained aqueous-phase copper(II) complex ions.     

Electronic structure, statistical mechanical simulations, and EXAFS spectroscopy of aqueous potassium

We investigate the solvation structure of aqueous potassium ions, using a combination of electronic structure calculations, statistical mechanical simulations with a derived polarizable empirical potential and experimental measurement of the extended X-ray absorption fine structure (EXAFS) spectra. The potassium K-edge (at 3,608 eV) EXAFS spectra were acquired on the bending magnet of sector 20 at the Advanced Photon Source, at ambient conditions and for the concentrations of 1 and 4 m KCl. We focus on the coordination distances and the degree of disorder of the first hydration shell as determined by electronic structure calculations, molecular dynamics simulations and experimental measurement. Finally, we characterize the changes of the structure in the first hydration shell with increasing temperature as predicted by molecular simulation     

A XANES and EXAFS Study of Hydration and Ion Pairing in Ambient Aqueous MnBr<Subscript>2</Subscript> Solutions

Extended X-ray absorption fine structure (EXAFS) and X-ray absorption near edge structure (XANES) spectroscopies were used to probe the first-shell coordination structure of Mn(II) in aqueous MnBr₂ solutions at ambient conditions from very dilute to the near saturation limit. The Mn K-edge EXAFS spectra for 0.05 and 0.2 m solutions showed that there was no Br(−I) in the first shell, and that the Mn(II) was fully hydrated with six water molecules in an octahedral arrangement. In contrast, for 6 m solution, the coordination number of water was reduced to about 5, and an average of about one bromine atom was present in the first shell as a contact ion pair. The 1s → 4p transition at 6545.5 eV confirmed the observation of Mn–Br contact ion pairs at high concentrations and the 1s → 3d transition at 6539.5 eV showed that the first shell coordination symmetry remained octahedral even in the presence of Mn–Br ion pairs.     

EXAFS studies with synchrotron radiation of polystyrene-ruthenium catalyst

The local structure of the metal-atom surroundings in polystyrene-ruthenium complexes (PSt-Ru) has been studied by EXAFS. EXAFS at the Ru K-edge (22,118 keV) has been measured for metallic Ru and PSt-Ru. Numerical elaboration of the data gives the Ru-C distance (d = 2.05 A) and the number of carbon atoms coordinated to the metal (coordination number 6) in PSt-Ru.     

Sulfur K-Edge EXAFS Studies of Cadmium-, Zinc-, Copper-, and Silver-Rabbit Liver Metallothioneins

The structures of metal-thiolate clusters in Zn(7)-MT, Cd(7)-MT, Cu(12)-MT, Ag(12)-MT, and Ag(17)-MT from rabbit liver have been investigated by sulfur K-edge X-ray absorption spectroscopy (XAS). In addition to providing metal-cysteinyl sulfur bond lengths, the sulfur K-edge EXAFS data provide the first direct evidence for mixtures of bridging and terminal sulfurs in Cu-MT and Ag-MT. The Zn-S and Cd-S bond lengths for tetrahedrally coordinated Zn(4)(SPh)(10)(2-) and Cd(4)(SPh)(10)(2-) compounds obtained from sulfur K-edge EXAFS data are 2.35 +/- 0.03 and 2.52 +/- 0.02 ?, respectively. Zn-S and Cd-S bond distances of 2.34 +/- 0.03 ? for Zn(7)-MT and 2.54 +/- 0.02 ? for Cd(7)-MT, respectively, calculated from sulfur K-edge EXAFS measurements, are consistent with the previously reported results from metal K-edge EXAFS data. Analysis of the sulfur K-edge EXAFS data for Cu(12)-MT indicates that Cu(I) is trigonally coordinated to sulfurs at a distance of 2.25 +/- 0.01 ?. Significant changes in CD spectra observed between Ag(12)-MT 1 and Ag(17)-MT 1 indicate that the modification of the three-dimensional structure occurs when Ag(17)-MT 1 is formed from Ag(12)-MT 1 as Ag(I) is added to the Ag(12)-MT 1. The Ag-S bond distances of 2.45 +/- 0.02 and 2.44 +/- 0.03 ? in Ag(1)(2)-MT 1 and Ag(1)(7)-MT 1, respectively, calculated from the sulfur K-edge EXAFS measurements, lead us to conclude that the Ag(I) in both Ag(1)(2)-MT 1 and Ag(1)(7)-MT 1 is digonally coordinated by thiolates. The number of metals bonded to sulfur in both model compounds and metal-containing metallothioneins is estimated from sulfur K-edge EXAFS measurements to be in the range 1.2-1.7, depending on the fraction of bridging sulfurs present in compounds. Unlike the spectral data recorded during Cu(I) binding, where sharp changes take place past 12 Cu(I), the CD data for Ag-MT 1 show little variation over the entire range of Ag(I):MT molar ratios. This result, established by both low- and high-energy optical methods, suggests that the three-dimensional structure of the metal-binding sites in metallothioneins is strongly influenced by the fraction of bridging sulfur. This analysis is the first to provide direct support for the presence of a clustered Ag-S structure for the Ag(17)-MT 1 species. These data also suggest that the structures in Ag(I) and Cu(I) metallothioneins are probably quite different.     

Exploring the capabilities of X-ray absorption spectroscopy for determining the structure of electrolyte solutions: computed spectra for Cr(3+) or Rh(3+) in water based on molecular dynamics

Extended X-ray absorption fine structure (EXAFS) spectra of Cr(3+) and Rh(3+) in aqueous solution are analyzed and compared with computed spectra derived from structural results obtained by molecular dynamics (MD) simulation. This procedure quantifies the reliability of the EXAFS structural determination when applied to ions in solution. It provides guidelines for interpreting experimental spectra of octahedrally coordinated metal cations in aqueous solution. A set of relationships among Debye-Waller factors is proposed on the basis of MD results to reduce the number of independent fit parameters. The determination of the second hydration shell is examined. Calculated XANES spectra compare well with experimental ones. Indeed, the splitting observed on the main peak of the Rh K-edge was anticipated by the calculations. Simulated spectra from MD structures of increasing cluster size show a relationship between the second hydration shell and features of the XANES region at energies just above the edge. The combination of quantum and statistical calculations with the XANES spectrum is found to be very fruitful to get insight into the quantitative estimation of structural properties of electrolyte solutions.     

Hydrogen and higher shell contributions in Zn2+, Ni2+, and Co2+ aqueous solutions: an X-ray absorption fine structure and molecular dynamics study

A detailed investigation of the hydration structure of Zn2+, Ni2+, and Co2+ in water solutions has been carried out combining X-ray absorption fine structure (EXAFS) spectroscopy and Molecular Dynamics (MD) simulations. The first quantitative analysis of EXAFS from hydrogen atoms in 3d transition metal ions in aqueous solutions has been carried out and the ion-hydrogen interactions have been found to provide a detectable contribution to the EXAFS spectra. An accurate determination of the structural parameters associated with the first hydration shell has been performed and compared with previous experimental results. No evidence of significant contributions from the second hydration shell to the EXAFS signal has been found for these solutions, while the inclusion of the hydrogen signal has been found to be important in performing a quantitative analysis of the experimental data. The high-frequency contribution present in the EXAFS spectra has been found to be due to multiple scattering (MS) effects inside the ion-oxygen first coordination shell. MD has been used to generate three-body distribution functions from which a reliable analysis of the MS contributions to the EXAFS spectra of these systems has been carried out.     

Arsenic speciation in multiple metal environments: I. Bulk-XAFS spectroscopy of model and mixed compounds

X-ray absorption fine structure (XAFS) spectroscopy was employed to determine the bonding environment of As(V) in the presence of Cu(II) and Zn(II) on goethite and gibbsite. In addition, several mineral species and precipitates derived from homogeneous and heterogeneous (presence of alpha-Cr(2)O(3)) super-saturations were studied. Structural parameters were determined after resolving the broad second shells in r-space by differential k-weighting (1, 2 or 3) and k-ranging (2.5- vs 3.5-12.75 A) of the raw EXAFS functions. In precipitates, AsO(4) was incorporated in the metal-hydroxides forming clinoclase-like and koettigite-like structures in the presence of Cu(II) and Zn(II), respectively. In the presence of both Cu(II) and Zn(II), the clinoclase structure formed preferentially over the koettigite structure under homogeneous oversaturated solution conditions and in the presence of eskolaite (alpha-Cr(2)O(3)). Silica promoted the formation of koettigite-like zinc-arsenate precipitates from initial As(V) and Zn(II) solution concentrations of 500 muM. On goethite and gibbsite, 750 muM As(V) formed mainly bidentate binuclear surface species in accordance with many previous findings even in the presence of equimolar Cu(II) and or Zn(II) concentrations. Copper was readily identified in the second shell environment of As(V) sorbed on gibbsite, but not on goethite. We hypothesize that this complex formed on the basis of Cu(II)'s ability to form polymeric species in solution and at the mineral-water interface in agreement with previous studies. The effects of Zn(II) on the coordination environment of As(V) on gibbsite and goethite could not be ascertained with As K-edge EXAFS spectroscopy. In addition to bidentate binuclear surface complexes, As(V) formed edge-sharing complexes with Fe, Al, and Cu atoms, which we could differentiate on the basis of the inter-atomic distances, phase shifts between wavefunctions of Fourier-filtered peaks, and differences in amplitude of the absorption envelopes. The analyses showed that of all data reduction steps, data presented in r-space and as wavefunctions of Fourier-filtered shells offer the greatest possibility for fingerprinting and inferring the influence of co-sorbing metal cations on the As(V) sorption complex. With regards to interpretations of micro-EXAFS data by abstract factor analyses and linear least-square combination fitting, analyses of As K-edge data should not be performed on the raw chi(k) data, but rather on consistently isolated second and higher-order shell features.     

X-Ray Absorption and Diffraction Studies of Pr3+, Tb3+ and Er3+-Activated Silica Gels

Rare-earth (Pr³⁺, Tb³⁺, Er³⁺) doped silica xerogels were studied by x-ray absorption spectroscopy and x-ray diffraction. A change of the local environment around rare-earth ions upon xerogel densification at 900–950°C and co-doping with aluminum ions was determined from the rare-earths L₃-edge EXAFS signals. The densification process induces a decrease of the coordination number and a compression and deformation of the first coordination shell, composed of oxygen atoms. The second coordination shell, composed of silicon and/or aluminum ions, also experiences some modification, which is attributed mainly to a shortening of the shell radius. No evidence of clustering of rare-earth ions upon densification was observed. X-ray diffraction data on Tb-doped gels confirm the EXAFS results.     

An X-ray absorption study of two VOCl3-modified silicas: evidence for chloride-silica interactions

The structures of the sites formed in the gas-solid reactions of VOCl3 with the surfaces of a fumed silica (Aerosil) and a silica gel (Sylopol) were investigated by using X-ray absorption spectroscopy. XANES and EXAFS analysis at the vanadium K-edge reveal that the sites have a uniform first coordination sphere regardless of the origin or the extent of hydroxylation of the silica support (controlled by thermal treatment in vacuo at 100 and 500 degrees C). Analysis of the second coordination sphere was limited by the lack of structural uniformity. EXAFS curve-fitting confirmed that the sites are [triple bond]SiOVOCl2, but revealed an unexpected asymmetry in the V-Cl bond distances. The latter is suggested to be a manifestation of silicon-chloride interactions.     

新型二维有机膦酸镍化合物的合成、晶体结构与气体吸附性能

在水热条件下,以对苯二甲基二膦酸为有机配体,以4,4'-联吡啶为辅助配体,合成了具有二维层状结构的有机膦酸镍化合物.晶体属于单斜晶系,C2/c空间群.该化合物每个金属中心与4个氧原子和2个氮原子配位,金属中心Nil通过4,4'-联吡啶配体相连,形成一维链状结构,再由有机膦酸连接形成了二维层状结构.通过灼烧可以除去化合物...     

Geometrical structure of yttrium and metal-bromine complexes in solution: limitations of extended X-ray absorption fine structure analysis (EXAFS)

An extensive study on the appearance of multi-electron features in the X-ray absorption spectra of several yttrium(III)-based compounds has been performed. The existence of a multi-electron transition of non-negligible intensity within the extended X-ray absorption fine structure (EXAFS) region of the Y K-edge spectra has been proven. The impact of such features in the EXAFS analysis is made evident for aqueous solutions of YBr3 x 6H2O in liquid and glassy states in the concentration range 0.005-2.0 M, in which this transition induces an overestimation in the coordination numbers derived from EXAFS. We have performed theoretical computation of cross-sections for the double-electron processes at the K-edge of both Y and Br. These computations have been applied to the experimental EXAFS K-edge spectra of both Y and Br in several solids and in aqueous solutions. While in the case of Y K-edge spectra the presence of such multi-electron transitions was seen to seriously affect the standard EXAFS analysis, its influence in the case of Br K-edge spectra was determined to be negligible.     

The dapE-encoded N-succinyl-l,l-diaminopimelic acid desuccinylase from Haemophilus influenzae is a dinuclear metallohydrolase

The Zn K-edge extended X-ray absorption fine structure (EXAFS) spectra, of the dapE-encoded N-succinyl-l,l-diaminopimelic acid desuccinylase (DapE) from Haemophilus influenzae have been recorded in the presence of one or two equivalents of Zn(II) (i.e. [Zn_(DapE)] and [ZnZn(DapE)]). The Fourier transforms of the Zn EXAFS are dominated by a peak at ca. 2.0 A, which can be fit for both [Zn_(DapE)] and [ZnZn(DapE)], assuming ca. 5 (N,O) scatterers at 1.96 and 1.98 A, respectively. A second-shell feature at ca. 3.34 A appears in the [ZnZn(DapE)] EXAFS spectrum but is significantly diminished in [Zn_(DapE)]. These data show that DapE contains a dinuclear Zn(II) active site. Since no X-ray crystallographic data are available for any DapE enzyme, these data provide the first glimpse at the active site of DapE enzymes. In addition, the EXAFS data for DapE incubated with two competitive inhibitors, 2-carboxyethylphosphonic acid and 5-mercaptopentanoic acid, are also presented.     

Local order structure and surface acidity properties of a Nb2O5/SiO2 mixed oxide prepared by the sol-gel processing method

The sol-gel processing method was used as an alternative route to obtain Nb₂O₅ phase homogenously dispersed in the SiO₂ matrix, improving the thermal stability of the Brønsted acid sites, Nb-OH and Nb-OH-Si groups. The local niobium structure and the influence of the amount of niobia on the surface of the Nb₂O₅/SiO₂ system were studied by XAS and XPS, respectively. For the samples calcined at 423 and 873 K, the 3d_5/2 BE values are at ca. 208.2 eV, indicating an ionic character for Nb(V) species in the SiO₂ matrix, probably associated to Si-O-Nb linkages. The features of Nb K-edge XANES spectra of samples show the absence of NbO species. The Nb K-edge EXAFS oscillations exhibit a shoulder at ca. 5.6 Å⁻¹, which probably arises from Nb-O-Si. This fact corroborates the EXAFS simulation data of the second coordination shell, whose best fitting is achieved with three distances, two Nb-Nb lengths and one Nb-Si.     

用EXAFS研究pH对Zn(Ⅱ)-TiO2体系吸附和微观构型的影响

应用延展X射线吸收精细结构(EXAFS)方法, 研究了不同pH对Zn(Ⅱ)在锐钛矿型TiO2表面吸附产物的微观构型的影响. 宏观的吸附-解吸实验表明, 随着pH值由5.8增大至6.8, 吸附等温线明显升高, Freundlich吸附常数由1.345 L/g增加到15.385 L/g; 而体系的不可逆性逐渐降低, 不可逆吸附系数(TⅡ)由0.43降低到0.23. 不同pH条件下吸附样品的EXAFS结果表明, Zn(Ⅱ)主要通过共用水合离子及TiO2表面的O原子结合到TiO2表面上, 第一配位层(Zn—O层)原子间距和配位数随着pH值增大逐渐降低, Zn(Ⅱ)在TiO2表面吸附形态从六配位向四配位转化;第二配位层(Zn—Ti层)分析结果表明, 存在2个典型的Zn—Ti原子间距, 即R1=0.319~0.334 nm(双齿方式结合的强吸附)和R2=0.366~0.378 nm(单齿方式结合的弱吸附), 随着pH值的升高, 强吸附位(CN1)逐渐减少而弱吸附位(CN2)逐渐增加, 其比值由2.12降低至0.89, 从而导致其在高pH值的条件下吸附量和可逆性明显增大. EXAFS结果从分子水平说明了该体系在不同pH值条件下表现出的可逆性差异是由于微观吸附状态不同所致.     

Structural characterization of zinc(II) chloride in aqueous solution and in the protic ionic liquid ethyl ammonium nitrate by x-ray absorption spectroscopy

Extended x-ray absorption fine structure (EXAFS) spectroscopy has been used to investigate the species and structures existing in a series of ZnCl(2)-H(2)O-NaCl solutions with different chloride/zinc ratios and in a solution of ZnCl(2) in the protic ionic liquid ethyl ammonium nitrate (EAN). The average coordination numbers and distances of zinc species were determined from the analysis of the EXAFS data. In aqueous solution the number of chloride ions tightly bounded to Zn(2+) is significantly related to the chloride/zinc ratio, and no inner complex formation between Zn(2+) and Cl(-) ions has been detected for low ZnCl(2) concentration (0.1 and 0.2 M). Conversely, in the same concentration range (0.13 M) the ZnCl(2) species do not dissociate in EAN and the Zn(2+) first coordination shell has two chloride ions and is completed by two oxygen atoms of the nitrate anion. The results of this investigation show that notwithstanding the existence of similar characteristics between EAN and water, the solvation properties of the two solvents are markedly different.     

CuO-BaO/SiO2催化剂的结构表征

以XRD、XPS和EXAFS手段对CuO－BaO／Sic2催化剂及其还原态的结构进行了研究．结果表明，在CuO－BaO／SiO2体系中铜和钡都是以氧化态的形式存在，超细SiO2载体对所负载的CuO的结构有影响．随着样品负载量的逐渐降低，Cu－O和Cu－Cu睡的健长和配位数逐渐征小，而且低载量样品的健长和配位数减小的幅度最大．在总负载量＞13．39％的样品中，CuO以晶相的形式存在；总负载量＜13．39％的样品中，CUO呈现单层分布的高分出状态．还原态样品中钢以本价铜的形式存在，随负载量的降低，还原态Cu－Cu健的镇长和配位数也分别呈现出逐渐减小的趋势．还原态中心铜原子在催化剂表面的分布状态基本上保持了氧化态催化剂中CuO物相的分市状态．     

High-energy X-ray absorption spectroscopy: a new tool for structural investigations of lanthanoids and third-row transition elements

This is the first systematic study exploring the potential of high-energy EXAFS as a structural tool for lanthanoids and third-row transition elements. The K-edge X-ray absorption spectra of the hydrated lanthanoid(III) ions both in aqueous solution and in solid trifluoromethanesulfonate salts have been studied. The K-edges of lanthanoids cover the energy range from 38 (La) to 65 keV (Lu), while the corresponding energy range for the L(3)-edges is 5.5 (La) to 9.2 keV (Lu). We show that the large widths of the core-hole states do not appreciably reduce the potential structural information in the high-energy K-edge EXAFS data. Moreover, for lanthanoid compounds, more accurate structural parameters are obtained from analysis of K-edge than from L(3)-edge EXAFS data. The main reasons are the much wider k range available and the absence of double-electron transitions, especially for the lighter lanthanoids. A comparative K- and L(3)-edge EXAFS data analysis of nonahydrated crystalline neodymium(III) trifluoromethanesulfonate demonstrates the clear advantages of K-edge analysis over conventionally performed studies at the L(3)-absorption edge for structural investigations of lanthanoid and third-row transition metal compounds. The coordination chemistry of the hydrated lanthanoid(III) ions in aqueous solution and solid trifluoromethanesulfonate salts, based on the results of both the K- and L(3)-edge EXAFS data, is thoroughly discussed in the next paper in this series (I. Persson, P. D'Angelo, S. De Panfilis, M. Sandstr?m, L. Eriksson, Chem. Eur. J. 2008, 14, DOI: 10.1002/chem.200701281).     

Structural analysis of sonochemically prepared PtRu versus Johnson Matthey PtRu in operating direct methanol fuel cells

Sonochemically prepared PtRu (3 : 1) and Johnson Matthey PtRu (1 : 1) were analyzed by X-ray absorption spectroscopy in operating liquid feed direct methanol fuel cells. The total metal loadings were 4 mg cm(-2) unsupported catalysts at the anode and cathode of the membrane electrode assembly. Ex situ XRD lattice parameter analysis indicates partial segregation of the Ru from the PtRu fcc alloy in both catalysts. A comparison of the in situ DMFC EXAFS to that of the as-received catalyst shows that catalyst restructuring during DMFC operation increases the total metal coordination numbers. A combined analysis of XRD determined grain sizes and lattice parameters, ex situ and in situ EXAFS analysis, and XRF of the as-received catalysts enables determination of the catalyst shell composition. The multi-spectrum analysis shows that the core size increases during DMFC operation by reduction of Pt oxides and incorporation of Pt into the core. This increases the mole fraction of Ru in the catalyst shell structure.     

浓度及冷冻-解冻处理对CuCl_2水溶液中Cu~(2+)区域结构的影响

应用扩展X射线吸收精细结构(EXAFS)光谱研究了CuCl2水溶液中Cu2+的区域环境结构,通过测定CuCl2水溶液在不同浓度条件下及冷冻-解冻(FT)处理前后CuK边EXAFS吸收谱,研究了浓度及冷冻-解冻处理对Cu2+第一配位层结构的影响.EXAFS实验结果表明,CuCl2水溶液中Cu2+第一配位层距离中心原子Cu最近邻原子为O原子,配位数介于3.0-4.3之间,Cu—O键长在0.192-0.198nm之间,这种结构与Cu2+的Jahn-Teller效应有关.不同浓度的CuCl2水溶液中Cu2+的区域环境结构有很大不同,随着CuCl2水溶液浓度的升高,Cu2+第一配位层配位数减小,Cu—O键伸长.结构参数拟合结果证实冷冻-解冻处理对Cu2+的区域环境结构有影响,CuCl2溶液经冷冻-解冻处理后,Cu2+第一配位层配位数变大,热无序度增加.