PHOTOSENSITIZED REDUCTION OF PYRIMIDINE BASES BY TRYPTOPHAN*

Abstract— Thymine and uracil were chemically altered when irradiated with UV light in aqueous solution containing tryptophan as a photosensitizer. The reaction is inhibited by oxygen and is therefore not an example of photodynamic action. Unlike the pyrimidine bases, purine bases were not altered under similar reaction conditions. Two major photoproducts were identified. One of the products was identified as the reduced base, dihydrouracil or dihydrothymine. The quantum yield for formation of dihydrouracil was 0.24 times 10^--⁴ to 13.6 times 10^--⁴, depending upon the concentrations of uracil and the reaction temperature. Radical scavengers such as cysteine and nitrous oxide decreased the rate of dihydrouracil formation. Other indole compounds also sensitized the photoreduction of uracil, their quantum yields ranging from <1 × 10^--⁵ for tryptamine to 1.3 times 10^--³ for indole-3-acetic acid. A reaction mechanism is presented whereby the pyrimidines are reduced by electron transfer from a metastable charge transfer complex originating from the first excited singlet state of tryptophan.     

PHOTOCHEMICAL REACTIONS OF AROMATIC KETONES WITH NUCLEIC ACIDS AND THEIR COMPONENTS I—. PURINE AND PYRIMIDINE BASES AND NUCLEOSIDES*.

Abstract— The photochemical reactions of benzophenone and acetophenone with purine and pyrimidine derivatives in aqueous solutions have been investigated by flash photolysis and steady-state experiments. Upon excitation of these two ketones in aqueous solutions, two transient species are observed: molecules in their triplet state and ketyl radicals. The triplet state lifetimes are 65 μsec for benzophenone and 125 μsec for acetophenone. The ketyl radicals disappear by a second order reaction, controlled by diffusion. In the presence of pyrimidine derivatives, the triplet state is quenched and the ketyl radical concentration is decreased without any change in its kinetics of disappearance. Ketone molecules in their triplet state react with purine derivatives leading to an increase in the yield of ketyl radicals due to H-atom abstraction from the purines. Steady-state experiments show that benzophenone and acetophenone irradiated in aqueous solution at wavelengths longer than 290 nm undergo photochemical reactions. The rate of these photochemical reactions is increased in the presence of pyrimidine derivatives and even more in the presence of purine derivatives. Following energy transfer from the triplet state of benzophenone to diketopyrimidines, cyclobutane dimers are formed. The energy transfer rate decreases in the order orotic acid > thymine > uracil. Benzophenone molecules in their triplet state can also react chemically with pyrimidine derivatives to give addition photoproducts. All these results are discussed with respect to photosensitized reactions in nucleic acids involving ketones as sensitizers.     

PHOTOCHEMICAL REACTIONS BETWEEN TRYPTOPHAN AND POLYNUCLEOTIDES*

Abstract— Anaerobic solutions of ¹⁴C labelled tryptophan and single-stranded synthetic polyribonucleotide form adducts when irradiated with UV light at wavelengths longer than 270 nm. These adducts are stable to cold 10% trichloroacetic acid and are also more resistant to hydrolysis catalyzed by bovine ribonuclease A than non-irradiated controls. All polyribonucleotides reacted with trp to some extent with reactivities in the order poly rU > poly rC = poly rA > poly rG.     

TRIPLET EXCITED STATE OF FUROCOUMARINS: REACTION WITH NUCLEIC ACID BASES AND AMINO ACIDS

Abstract. The triplet-triplet absorption spectra of psoralen, xanthotoxin, angelicin and bergapten have been determined using the technique of pulse radiolysis and laser flash photolysis in benzene and water. The extinction coefficients of the triplet transitions have been measured and used to determine the singlet → triplet intersystem crossing quantum yields for 353 nm excitation. These yields vary considerably in passing from benzene to water as solvent. The highest yields were obtained for psoralen and angelicin in water, being 0.45 and 0.33, respectively. Reaction rate constants of the psoralen and angelicin triplets with various pyrimidine and purine nucleic acid bases and amino acids have been measured. The high reactivities support the suggestion that the photosensitising properties of furocou-marins are mediated by the corresponding furocoumarin triplet states. The similarly high S → T quantum yields, and triplet reactivities with pyrimidines of psoralen and angelicin, also support the suggestion that the observed differences in photosensitising properties of these two psoralens may be due to their differing geometries, which allow psoralen itself to intercalate DNA more easily than angelicin. The efficient reactions also found for psoralen and angelicin triplets with amino acids suggest that such triplets in vivo may also react with these components. Significant damage may thus be caused to protein as well as nucleic acid components of the cell.     

SPECTROFLUOROMETRIC STUDY ON PHOTOCHEMICAL INTERACTION BETWEEN CHLORPROMAZINE AND NUCLEIC ACIDS

Abstract— Near-UV irradiation of a mixture of chlorpromazine and single-stranded nucleic acids produced a non-dialyzable photoproduct which emitted characteristic fluorescence at around 520 nm. The same fluorescent species was also formed by the photoreaction with purine nucleotides but not with pyrimidine nucleotides. The highest photoreactivity was observed with GMP. Smaller amounts of the species were formed in a solution with a high salt concentration than in that with a low salt concentration. A higher rate was observed under anaerobic conditions than under aerobic conditions.     

TRIPLET EXCITED STATE OF COUMARIN AND 4'5' DIHYDROPSORALEN: REACTION WITH NUCLEIC ACID BASES AND AMINO ACIDS

Abstract—The triplet-triplet absorption spectra of coumarin, 5.7 dimethoxycoumarin and the furocoumarin 4'5' dihydropsoralen. a model for 4'5' psoralen-pyrimidine mono adducts, have been determined by the techniques of pulse radiolysis and laser flash photolysis. The extinction coefficients of the triplet transitions have been measured and used to determine the singlet → triplet intersystem crossing quantum yields for 347 nm excitation in water. Reaction rate constants for coumarin and 4'5' dihydropsoralen triplets with various pyrimidine and purine nucleic acid bases, and amino acids, have been measured. Long-lived transient absorptions detected after quenching coumarin and 4'5' dihydropsoralen triplets with tryptophan are assigned to mixtures of the corresponding coumarin radical anion and the tryptophan radical cation. The spectra of the radical anions of coumarin and 4'5' dihydropsoralen were established using pulse radiolysis of the coumarins in aqueous formate. It is suggested that coumarins and furocoumarin triplets are quenched by nucleic acid bases and amino acids via a chargetransfer mechanism.     

SINGLET ENERGY TRANSFER BETWEEN AROMATIC AMINO ACIDS AND NUCLEIC ACID BASES. THEORETICAL CALCULATIONS

Abstract— Critical Forster distances for excitation energy transfer at the singlet level between the tyrosyl or tryptophyl residues of proteins and nucleic acid bases have been calculated. Efficient singlet energy transfer can be expected from tyrosine to nucleic acid bases both at room temperature (10 0 < 17 A) and at low temperature (20 < R₀ < 23 Å). At low temperature nucleic acid bases should be able to transfer their singlet excitation energy to the indole ring of tryptophan with a reasonable probability (9 < R₀ < 15 A).     

咔唑与氯代烷烃的光化反应

本文研究了咔唑与氯代烷烃在光照下的相互作用,并用荧光发射光谱、激发光谱、咔唑的氯代烷烃溶液光照后与二甲基黄溶液混合发生的颜色变化,证明了光照下咔唑与氯代烷烃产生了化学反应,同时通过荧光猝灭和燐光实验证实了该反应是通过激基复合物进行的,简短地讨论了反应初期的反应机理。     

PHOTOCHEMICAL ADDITION OF AMINO ACIDS AND PEPTIDES TO DNA

Abstract— The quantum yields for photochemical addition of twenty of the amino acids commonly occurring in proteins to denatured calf thymus DNA have been determined in deoxygenated phosphate buffer at λ 254 nM and pH 7 using a fluorescamine assay technique. Fifteen were found to be reactive, with cysteine, lysine, phenylalanine, tryptophan and tyrosine being the most reactive. Alanine, aspartic acid, glutamic acid, serine and threonine were unreactive. Analogous quantum yields for a series of eighteen peptides of the form glycyl X (X being one of the commonly occurring amino acids) were also determined, along with the corresponding quantum yields for L-alanyl-L-alanine, L-alanyl-L-tryptophan, L-seryl-L-seryl-L-serine, L-threonyl-L-threonyl-L-threonine, and L-cystine- bis -glycine. All of the peptides were found to be reactive. The modified amino acids N^ε-methyllysine, N^ε, N^ε, N^ε-trimethyllysine and N^ε-acetyllysine, all occurring in minor amounts in the histone group of chromosomal proteins, were also found to be reactive as was N^α-acetyllysine. The quantum yields for photoaddition of a selected group of amino acids and peptides to denatured DNA and native DNA are compared. In some cases higher quantum yields for photoaddition to denatured DNA are observed while in other cases the reverse is true. The effect of oxygen on the quantum yields for photoaddition of selected peptides to DNA was examined. While for most systems studied the amount of reaction in aerated systems was less than in deoxygenated systems, in the case of glycyl-L-phenylalanine the reverse was true.     

光诱导氧自由基与嘧啶碱基及其核苷反应的ESR研究

活性氧在破坏核酸结构,攻击其嘌呤碱基和嘧啶碱基,导致变异的出现和累积方面起重要作用。在生物体内,超氧自由基(O_2)是一个非常重要的活性氧,是氧分子单电子还原时首先生成的产物。由O_2衍生成过氧化氢(H_2O_2),羟基自由基(OH),单线态分子氧(~1O_2),     

LASER CROSS-LINKING OF PROTEINS TO NUCLEIC ACIDS: PHOTODEGRADATION AND ALTERNATIVE PHOTOPRODUCTS OF THE BACTERIOPHAGE T4 GENE 32 PROTEIN

Pulsed laser cross-linking provides a means of introducing a covalent bond between proteins and the nucleic acids to which they are bound. This rapid cross-linking effectively traps the equilibrium that exists at the moment of irradiation and thus allows examination of the protein-nucleic acid interactions that existed. Laser irradiation may also induce photodestruction of protein and we have used the bacteriophage T4 gene 32 protein to investigate this phenomenon. Our results show that both nonspecific and specific photoproducts can occur, specifically at wavelengths where the peptide backbone of proteins is known to absorb. These results demonstrate that nonspecific photodegradation can be correlated with the formation of a specific photodegradation product. The formation of this product was monitored to show that product yield is nonlinearly dependent on laser power and wavelength. We have also investigated an unexpected photoproduct whose formation is dependent on the length of the polynucleotide to which the gene 32 protein binds and that further demonstrates the complexities of analyzing protein-nucleic acid interactions through the use of UV laser cross-linking. These data provide essential information for the establishment of appropriate conditions for future studies that use UV cross-linking of protein-nucleic acid complexes.     

PHOTOCHEMICAL ADDITION OF AMINO ACIDS AND PEPTIDES TO POLYURIDYLIC ACID

Abstract— The quantum yields for photochemical addition of glycine and the L-amino acids commonly occurring in proteins (excluding proline) to polyuridylic acid have been determined in deoxygenated phosphate buffer at pH 7, using a fluorescamine assay technique. All twenty amino acids were found to be reactive, with cysteine, tryptophan, phenylalanine, tyrosine, arginine, lysine and methionine being the most reactive. The analogous quantum yields for a series of eighteen dipeptides of the form glycyl X (X being one of the commonly occurring amino acids, including proline), of L-alanyl-L-tryptophan, of the tripeptides L-seryl-L-seryl-L-serine and L-threonyl-L-threonyl-L-threonine, of the tetrapeptide L-cystine- bis -glycine, and of the lysine derivative N_α-acetyllysine were also measured. All were found to be reactive toward photoaddition to poly U.     

STUDIES ON THE PHOTO-C4-CYCLO-ADDITION REACTIONS BETWEEN SKIN-PHOTOSENSITIZING FUROCOUMARINS AND NUCLEIC ACIDS*

Abstract— Among the natural or synthetic furocoumarins (psoralens) a group exists which has interesting biological properties, the best known of which is skin-photosensitization. The mechanism of action has remained unclarified for a long time. Furocoumarins lack photooxidative properties; they act by a mechanism that does not require oxygen and are therefore different from photodynamic substances. Photosensitizing furocoumarins when irradiated at 365 nm react with nucleic acids to give a C₄-cyclo-addition to the 5,6-double bond of the pyrimidine bases engaging their 3,4- or 4‵,5‵-double bond. Differences exist in the behaviour of the various furocoumarins; psoralen reacts equally well with native DNA, with denatured DNA and with RNA, whereas bergapten, xanthotoxin and 8-methylpsoralen at room temperature react to a much greater extent with native DNA than with denatured DNA and with RNA. A temperature effect has also been observed. In the case of native DNA an intercalation, occurring in the dark, of furocoumarins between two adjacent base pairs of the double helix is suggested as the first step in the reaction. The photoreaction is not accompanied by breaks in the polynucleotide chain or by conformational modifications of the macromolecule. A parallelism was observed between the order of activity of the substances of this group for photoreaction with native DNA and for skin-photosensitization. Ehrlich ascites tumor cells lose completely their capacity of transmitting the tumor after irradiation in the presence of psoralen, bergapten and xanthotoxin. By hydrolysis of DNA extracted from Ehrlich ascites tumor cells irradiated in the presence of psoralen a photoadduct between psoralen and thymine was isolated.     

PHOTOREACTIONS AT 3655Å BETWEEN PYRIMIDINE BASES AND SKIN-PHOTOSENSITIZING FUROCOUMARINS

Abstract After irradiation at 3655 Å of an aqueous frozen solution containing thymine and psoralen, a new photocompound was isolated by column chromatography. It contains a furocoumarin and a pyrimidine-moiety linked together by the formation of a cyclobutane ring (see formulas II and III). By irradiation at 2537 Å in acetic acid solution, the photocompound breaks up again yielding psoralen and thymine. From an aqueous frozen solution containing cytosine and psoralen irradiated at 3655 Å, an analogous photocompound was obtained, which, however, consists of the addition to psoralen of a uracil molecule, instead of a cytosine one (IV, V). It has been stated that the hydrolytic deamination of the cytosine moiety to the uracil one takes place during the working up of the photocompound in aqueous solution after irradiation. Substances with properties similar to those above were obtained from bergapten (5-methoxy-psoralen) and thymine, from psoralen and thymidine or thymidylic acid, irradiated at 3655 Å.
The new substances may be considered as model compounds in explaining the photoreactions which take place between the skin-photosensitizing furocoumarins and DNA upon irradiation at 3655 Å.     

ISOLATION AND IDENTIFICATION OF TRYPTOPHAN PHOTOPRODUCTS FROM AQUEOUS SOLUTIONS OF TRYPTOPHAN EXPOSED TO NEAR-UV LIGHT*

Abstract—One of the previously unidentified photoproducts isolated from the photolysate of aqueous tryptophan solutions was identified as 2-carboxy-3a-hydroxy-1,2,3,3a,8,8a-hexahydropyrrolo(2,3b)-indole by direct comparison with the authentic reference compound synthesized using the established procedure. This pyrroloindole alcohol has been shown to be the reduction product of the 3a-hydroperoxy intermediate (structure 4 in Fig. 1) by Nakagawa et al . (1977). The isolation and identification of this derivative and the detection of the peroxy intermediate 3a-hydroperoxypyrrolidinoindole ( 4 ). from irradiated aqueous tryptophan solutions suggests that the direct photooxidation of l -tryptophan to fromylkynurenine may follow a pathway via a tricyclic intermediate instead of the energetically unfavorable dioxotane intermediate. This scheme is similar to the mechanistic model proposed by Nakagawa et al . (1977) for the rose bengal sensitized photooxidation of tryptophan.