The elimination of carbon monoxide from molecular ions of phenol and other [C6H6O]+˙ isomers

Phenol and five acyclic isomeric compounds have been investigated using electron impact and field ionization techniques, mass analysed ion kinetic energy spectrometry and collision induced dissociation mass analysed ion kinetic energy spectrometry. The kinetic energy release data corresponding to the elimination of carbon monoxide from the molecular ions show that at least two structures of the reactant ion are involved. The electron impact and field ionization collision induced dissociation mass analysed ion kinetic energy spectra indicate that under electron impact conditions, the phenol ion partially isomerizes to another ion structure. An isomerization of about 40% to the structure of cis-2-hexen-4-yn-1-al is in good accordance with the spectral data.     

Experimental investigation of the molecular ions of the xylenes

A mass spectrometric method of distinguishing between molecular ions of the three isomeric xylenes (dimethylbenzenes) was sought, in light of recent findigs that photoexcited ions could be distinguished via measurements of kinetic energy release accompanying expulsion of a methyl radical. Provided the molecular ions are formed with low internal energies, reproducible differences were found between relative intensities of collision induced reactions of higher critical energies, than for methyl expulsion. These differences exist both for collision energies in the kilovolt range (double focusing mass spectrometers) and in the range of a few tens of volts (triple quadrupole instrument). Though statistically significant, these differences were small. The mechanism of isomerization and fragmentation was investigated via isotopic labelling studies and measurements of kinetic energy release. Most of the present findings can be rationalized in terms of the most recent version of established mechanisms for reactions of ionized methylbenzenes.     

Comparison of collisional activation spectra of some positive ions produced both by charge reversal of negative ions and by decomposition of positive ions

The charge reversal collision induced decomposition mass analyzed ion kinetic energy spectrum of allyl anion has been compared with the collision induced dissociation mass analyzed ion kinetic energy spectrum of allyl cation and found to be identical except for the presence of +2 ions formed by charge stripping in the spectrum of the [C₃H₅]⁺ ion. Likewise, the collision induced dissociation mass analyzed ion kinetic energy charge reversal spectrum of [CH₃Se]^? has been compared with the collision induced dissociation mass analyzed ion kinetic energy spectrum of [CH₃Se]⁺ and found to be identical. A study of the pressure dependence of the collision induced dissociation mass analyzed ion kinetic energy spectrum of [C₃H₅]⁺ and [C₃H₅]^? showed increasing fragmentation with increasing collision gas pressure, and suggests that a greater mean number of collisions converts more energy to internal modes in the collision induced dissociation mass analyzed ion kinetic energy experiment even at low pressures.     

Dissociative scattering of hyperthermal energy CF3+ ions from modified surfaces

Dissociative scattering of CF3+ ions in collision with a self-assembled monolayer surface of fluorinated alkyl thiol on a gold 111 crystal has been studied at low ion kinetic energies (from 29 to 159 eV) using a custom built tandem mass spectrometer with a rotatable second stage energy analyzer and mass spectrometer detectors. Energy and intensity distributions of the scattered fragment ions were measured as a function of the fragment ion mass and scattering angle. Inelastically scattered CF3+ ions were not observed even at the lowest energy studied here. All fragment ions, CF2+, CF+, F+, and C+, were observed at all energies studied with the relative intensity of the highest energy pathway, C+, increasing and that of the lowest energy pathway, CF2+, decreasing with collision energy. Also, the dissociation efficiency of CF3+ decreased significantly as the collision energy was increased to 159 eV. Energy distributions of all fragment ions from the alkyl thiol surface showed two distinct components, one corresponding to the loss of nearly all of the kinetic energy and scattered over a broad angular range while the other corresponding to smaller kinetic energy losses and scattered closer to the surface parallel. The latter process is due to delayed dissociation of collisionally excited ions after they have passed the collision region as excited parent ions. A similar study performed at 74 eV using a LiF coated surface on a titanium substrate resulted only in one process for all fragment ions; corresponding to the delayed dissociation process. The intensity maxima for these fragmentation processes were shifted farther away from the surface parallel compared to the thiol surface. A new mechanism is proposed for the delayed dissociation process as proceeding via projectile ions' neutralization to long-lived highly excited Rydberg state(s), reionization by the potential field between the collision region and entrance to the energy analyzer, and subsequent dissociation several microseconds after collisional excitation. A kinematic analysis of experimental data plotted as velocity Newton diagrams demonstrates that the delayed dissociation process results from the collisions of the ion with the bulk surface; i.e., the self-assembled monolayer surface acts as a bulk surface. A similar analysis for the highly inelastic collision processes shows that these are due to stronger collisions with a fraction of the thiol molecular chain, varying in length (mass) with the ion energy.     

Excitation in ion–molecule collisions. A study of protonated aromatic molecules by ion kinetic energy spectrometry

Collision induced dissociation of protonated aromatic ions formed in a chemical ionization source has been studied using the technique of mass analyzed ion kinetic energy spectrometry. The observed fragmentations are concordant with those seen in the photodissociation spectra of the same ions with one significant exception. Loss of H is always a major collision induced dissociation process but is not observed in photodissociation spectra. This differences is not due to differences in the total amount of energy transferred in ionic excitation but to differences in the form in which the energy is supplied. Collision induced dissociation can lead to processes forbidden in photoexcitation, particularly those associated with electron unpairing in violation of the even→even+even rule for fragmentations.     

Collision induced dissociations of radical cations

The collision induced dissociation spectra of ions generated by ionization or fragmentation of various samples reveal at least five non-decomposing structures. In contrast, the kinetic energy release measurements for the loss of carbon monoxide from the metastable ions are in agreement with the occurrence of a common reactive species. Isomerization into an ‘α,β-unsaturated aldehyde-like’ structure prior to fragmentation is proposed to accommodate these collision induced dissociation and mass analysed ion kinetic energy data. Some resuts suggest also that carbon monoxide loss from the phenol molecular ion may not occur via the cyclohexadienone tautomer.     

C~6F~6^+→C~6F~5^++F气相单分子分解及碰撞诱导分解 反应研究

用质量分析离子动能谱(MIKES)研究了C~6F~6^+→C~6F~5^++F的气相单分子分解及其与Ar和He的碰撞诱导分解(CID)反应。实验结果表明,C~6F~6^+在电离室中获得足够能量而被激发到某一长效激发态,而CID是诱导其分解的必要步骤,且该分解过程有两条能量不同的反应途径。当碰撞气体为Ar时,两条途径所对应的能量变化分别为0eV和+9.8eV(将多余能量转化为动能),而当碰撞气体为He时,则分别为0eV和-17eV(将多余能量转化为内能)。CID/Ar诱导该长效激发态在C-F键断裂之前将多余能量转化为动能,而在CID/He中则将多余能量转化为内能。     

Is collision-induced dissociation of low-energy carbonyl sulfide cations adversely affected by asymmetry?

We have measured relative abundances of fragment ions resulting from collision-induced dissociation of OCS(+) ions in collision with xenon neutrals as a function of ion kinetic energy and scattering angle. The lowest energy dissociation product, S(+), dominates at all energies up to 53 eV kinetic energy studied here. Surprisingly, the second most abundant dissociation channel is CS(+) and not CO(+) even though the thermochemical threshold for CO(+) is lower than that for CS(+) and CO(+) is more abundant than CS(+) in the normal mass spectrum of OCS. We do not observe any significant abundance of CO(+) in this energy range, suggesting that collision-induced excitation and dissociation of OCS(+) is significantly different to that of symmetric triatomic ions. A possible role of asymmetry in the molecular ion's collisional activation via neutral collision is suggested for the different behavior.     

Concerning the Beckmann rearrangement of aryl heteryl ketoxime ions

The possible Beckmann rearrangement of aryl heteryl ketoxime ions has been investigated by studies on the 70 eV mass spectra, metastable ion spectra and collision induced dissociation spectra of pairs of isomeric ketoximes and corresponding amides. Aryl cycloalkyl ketoximes were also studied, and the molecular ions of these and the corresponding amides showed no evidence of interconversion. The introduction of the heterocyclic moieties made little change to this situation although some novel rearrangements were observed.     

The modern mass spectrometer—a complete chemical laboratory

Using nitrobenzene as an example, various ways in which a contemporary mass spectrometer can be utilized to yield a wealth of information about the compound studied are reviewed. Applying a variety of different techniques and procedures, in addition to the conventional low resolution mass spectrum, the following nitrobenzene spectra have been obtained: collision induced dissociation mass spectrum, mass analysed ion kinetic energy spectra, collision induced dissociation mass analysed ion kinetic energy spectra, spectra obtained at constant B/E, spectra obtained at constant B²/E, high voltage scans of metastable ion fragmentation processes, consecutive fragmentations in different field free regions, charge exchange mass spectra, charge stripping mass spectra, doubly charged ion mass spectra, chemical ionization mass spectra, negative ion mass spectra, negative ion mass analysed ion kinetic energy spectra, negative ion mass analysed ion kinetic energy collision induced dissociation spectra, charge inversion spectra, etc. The complementary types of information available from the above studies are discussed to show the unique versatility of mass spectrometry as a technique for the examination of organic compounds.     

Applications of collision dynamics in quadrupole mass spectrometry

Some applications of collision dynamics in the field of quadrupole mass spectrometry are presented. Previous data on the collision induced dissociation of ions in triple quadrupole mass spectrometers is reviewed. A new method to calculate the internal energy distribution of activated ions directly from the increase in the cross section for dissociation with center of mass energy is presented. This method, although approximate, demonstrates explicitly the high efficiency of transfer of translational to internal energy of organic ions. It is argued that at eV center of mass energies, collisions between protein ions and neutrals such as Ar are expected to be highly inelastic. The discovery and application of collisional cooling in radio frequency quadrupoles is reviewed. Some previously unpresented data on fragment ion energies in triple quadrupole tandem mass spectrometry are shown that demonstrate directly the loss of kinetic energy of fragment ions in the cooling process. The development of the energy loss method to measure collision cross sections of protein ions in triple quadrupole instruments is reviewed along with a new discussion of the effects of inelastic collisions in these experiments and related ion mobility experiments.     

The fragmentation of the ions of nonan-4-one: A study by triple quadrupole mass spectrometry

The fragmentation pathways for the ions generated by electron impact from nonan-4-one have been studied using low energy collision induced dissociation in a triple quadrupole mass spectrometer. Over 400 fragmentation pathways have been identified. These results are compared with data from earlier ion kinetic energy spectrometry studies of nonan-4-one which employed metastable decompositions.     

Rearrangement of molecular ions following electron impact: IV—Origin of the [M—28]+˙ ions in the mass spectra of α-methyl-2-decalone

The transposition of the molecular ions (ring contraction) of 2-decalones is demonstrated by a study of the [M–28]⁺˙ peak and its homologue in labelled products using ionization and appearance energy measurements, and mass analysed ion kinetic energy and collision induced dissociation spectra.     

Grazing incidence surface-induced dissociation of protonated peptides generated by matrix-assisted laser desorption/ionization

The grazing incidence surface-induced dissociation (GI-SID) of various protonated peptides with typical kinetic energies of 350 eV was investigated. Peptide ions were generated by matrix-assisted laser desorption/ionization (MALDI) using delayed extraction. The collision target surfaces used were aluminum and a liquid film of perfluorinated hydrocarbons. All peptides studied in these experiments showed enhanced fragment ion yields at grazing incidence (GI-SID effect) as observed in our former experiments with other precursor ion types. In general the GI-SID spectra exhibit N-terminal a(1)-type fragment ions, immonium ions and side-chain fragment ions in the low mass-to-charge region. Fragment ion series of the peptide backbone were not observed, which are typical and abundant in the spectra of established fragmentation techniques like collision-induced dissociation, MALDI post-source decay or surface-induced dissociation at steeper angles. The potential of the GI-SID process to yield useful information for primary structure determination of peptides is indicated by the observed differences in the GI-SID spectra of the isomeric dipeptides LR and IR.     

Ion/molecule reaction inside the collision cell of a tandem quadrupole mass spectrometric system. 2. Energy dependence of ammonium ion formation

The dependence of the protonation of neutral ammonia on the axial kinetic energy of protonated reactant ions has been studied in the gas phase, using various protonated carbonyl compounds, inside the collision cell of a tandem quadrupole mass spectrometric system. The hypothesis of two different and non-competitive reaction channels has been proposed. The first is characterized by a very low (peaked at ±0.05 eV_cm) and well-defined axial kinetic energy of the reactant ion, while the second is more energy demanding (estimated threshold at ±0.2 eV_cm) and expressed by a collisionally induced dissociation-like energy curve. Fourier transform mass spectrometric experiments have shown that ammonium ion can be generated by direct proton exchange and fragmentation of the adduct ion obtained.     

Dissociation dynamics of halotoluene ions,production of tolyl,benzyl and tropylium ([C7H7]+)ions

The dissociation rates and energetics of the loss of halogen atoms from energy-selected halotoluene ions were investigated by photoelectron photoion coincidence (PEPICO) and collisional activation (CA) mass spectrometric experiments. Dissociation onsets, determined from the dissociation rates measured as a function of the internal energy of the parent ion, revealed the formation of three [C₇H₇]⁺ isomers, which were identified, on the basis of the CA data, as the tolyl, benzyl and tropylium ions. All of the ions investigated produced a mixture of isomeric ions. Only iodotoluene ions produced any tolyl product ions by a direct bond cleavage. The bromo- and chlorotoiuene ions produced mixtures of benzyl and tropyl ions. The observed two-component decay rates of the iodotoluene ions revealed the participation of a lower energy [C₇H₇I]^{+ ˙} isomer in the dissociation process. The identity of this isomer is not known but it probably does not have the cycloheptatriene ion structure because considerable kinetic energy was released in this dissociation.     

Skeletal rearrangements on chemical ionization of dibenzyl ether and derivatives

Protonated molecular ions of dibenzyl ether, formed by chemical ionization using hydrogen and isobutane as reagent gases, undergo skeletal rearrangements to lose water and formaldehyde, both in the ion source and the flight path. The rearrangements have been elucidated by deuterium labelling and chemical substitution. The water lost contains the reagent proton and an aromatic hydrogen atom, and the aromatic hydrogen atoms have been shown to be mobile prior to the reaction. It is proposed that the skeletal rearrangement for water loss is initiated by protonation on the ether oxygen atom, followed by benzyl migration. The formaldehyde lost contains benzylic hydrogen atoms exclusively, and it is proposed that the skeletal rearrangement is preceded by hydrogen rearrangement of an oxygen protonated molecular ion to a ring protonated molecular ion. Daughter ion structures are supported by comparisons of their collision induced dissociation spectra with those of isomeric ions prepared by alternative routes.     

Gas-phase ion chemistry and organic chemistry-the story of a hybrid six sector mass spectrometer--the "AutoSpec 6F"

The AutoSpec 6F mass spectrometer is a large, floor standing instrument comprising a pair of commercial EBE geometry (AutoSpec) mass spectrometers coupled in series to provide an hybrid EBE-EBE configuration, (E and B being respectively electrostatic and magnetic sectors.) It was designed in close collaboration between Professor R. Flammang and VG Analytical in Manchester, UK. It was equipped with five collision cells and allowed the recording of high energy CID (collision induced dissociation), MIKES (mass analyzed ion kinetic energy spectrometry) and NRMS (neutralization re-ionization mass spectrometry) data as well as consecutive MSn analyses. The field-free regions between sectors allowed the study of unimolecular decomposition products from long-lived metastable ions. The mass spectrometer became even more versatile when an RF-only quadrupole collision cell was installed between the second and the third electric sector. This allowed the study of associative ion/molecule reactions in the low kinetic energy regime. Bimolecular chemical reactions were performed inside the quadrupole cell when a neutral reagent was introduced and the reaction products were analyzed by high energy CID in the downstream sectors. This paper tells the history and summarizes the capabilities of this versatile instrument.     

Positive-ion mass spectra and collision-induced dissociation of some 2,3-didehydro amino acids

The positive-ion mass spectra of a number of didehydro amino acids, ionized by electron impact and/or thermospray, and collision-induced dissociation spectra taken at collision energies of a few electron volts and keV have been performed on multiple quadrupole and reversed geometry sector instruments. Observed differences in the mass spectra and in the fragmentation patterns are explained in terms of different isomeric structures, different internal excitation energies and different ion transit times between the ion source and the collision cell. Molecular ions of unhydrated amino acids are efficiently formed both by electron impact and thermospray, whilst molecular ions of the hydrated compounds are formed more efficiently by the latter technique. The present investigation demonstrates that the use of different ionization techniques combined with mass spectrometry/mass spectrometry measurements at different collision energies yields a wealth of information relevant to structural characterization of this important class of molecules.     

Surface induced reactions of cluster ions

First results are presented from a new apparatus, consisting of a supersonic beam for generating neutral clusters, a variable energy electron gun for ionizing the clusters, and a tandem mass spectrometer set-up for studying surface induced reactions of mass and energy selected cluster ions. Rare gas cluster ions, fragment ions from SF₆, benzene ions and benzene cluster ions have been investigated so far. Cluster ion dissociation, intracluster ion molecule reactions and surface reactions with adsorbed hydrocarbons have been shown to be important reaction channels for these ion-surface collision at energies ranging from a few eV to 500 eV. The surface induced fragmentation spectrum is demonstrated to be a useful tool for probing binding energy and structure of cluster ions.