Optical detection of spin polarization in single-molecule magnets [Mn(12)O(12)(O(2)CR)(16)(H(2)O)(4)

A magneto-optical study has been undertaken of the mixed-valence single-molecule magnet [Mn(IV)(4)Mn(III)(8)O(12)L(16)] in which the ligands, L, are acetate (Mn(12)Ac) or the long-chain carboxylic acid, C(14)H(29)COOH (Mn(12)C(15)), that confers better solubility in organic solvents. Thin polymer films of these compounds in poly(methyl methacrylate) (PMM) have been cast by solvent evaporation to provide samples suitable for variable-temperature and field magnetic circular dichroism (MCD) studies. The absorption spectra in isotropic light are featureless, whereas the low-temperature MCD spectra contain resolved peaks, both positive and negative. MCD magnetization curves measured at temperatures above 4.2 K have established a ground-state spin of S = 10 and an axial zero-field parameter, D, of -0.61 K, similar to that determined for single crystals of Mn(12)Ac. By studying at a variety of optical wavelengths, the polarization ratios of the optical transitions relative to the unique axis of the zero-field distortion have been determined. The MCD magnetization curves measured at 4.2 K between 0 and 5 T for the case of Mn(12)C(15) in the PMM film can be fitted only on the assumption of nonrandom distribution of molecular z-axes arising from stresses in the polymer film during the process of casting. MCD-detected hysteresis curves measured in both frozen solution and PMM films, below the blocking temperature of approximately 3 K, show a high retention of spin polarization after reduction to zero of a polarizing magnetic field. This generates intense zero-field circular dichroism (CD) with maximum intensity for xy-polarized optical transitions whose sign depends on the direction of the original polarizing field. The optical polarization and the selection rules for MCD select a subset of molecular orientations with respect to the direction of field. Thus, the magnetically induced CD provides a highly sensitive and rapid optical method of reading the spin polarization of molecular magnets.     

Synthesis and Electronic Structure of A_2B Type Halogen Atoms Substituted H_3-Triarylcorroles

Seven electron-deficient A_2 B type H_3-triarylcorroles have been synthesized and characterized. The solvent dependence of the electronic absorption and magnetic circular dichroism(MCD) spectra and a series of TD-DFT calculations have been used to analyze trends in the electronic structures. Significant differences are observed in the optical spectra when solvents of differing polarity are used,which can be assigned to the effect of NH-tautomerism.     

MCD and absorption spectra of the monovalent anion of tribenzo [12] annulene

The magnetic circular dichroism (MCD) and absorption spectra of the monovalent anion of tribenzo [12] annulene have been measured in the visible and the near-infrared region. The absence of a temperature dependence of the MCD proves a non-degenerate ground state. An assignment of the spectra has been given with the aid of a semi-empirical π-electron calculation (PPP approximation). Influence of the counter ion on optical and ESR spectra was tested by the use of different solvents. No divalent anions could be obtained.     

Experimental and theoretical study of the CD spectra and conformational properties of axially chiral 2,2'-, 3,3'-, and 4,4'-biphenol ethers

New chiral biphenol ethers (Biph22, Biph33, and Biph44), carrying (R)-methylpropyloxy groups at 2,2'-, 3,3'-, and 4,4'-positions of biphenyl, were prepared. The introduced peripheral chiral groups in these biphenol ethers induce an (averaged) axial chirality to give predominant aR- or aS-rotamers. The chiroptical properties of these axially chiral biphenol ethers in polar and nonpolar solvents were determined experimentally and were compared with the corresponding theoretical values to determine their conformational behavior in solution. Geometry optimization at the DFT-D/TZV2P level and subsequent time-dependent density functional theory (TD-DFT) at the BH-LYP/TZV2P level treatments to obtain rotatory strengths revealed that 6 out of 18 conformers (aR-Tg-, aR-Tg+, aR-G+t, aS-Tg-, aS-Tg+, and aS-G+t) are crucial to reproduce the experimental circular dichroism (CD) spectra and optical rotations. Although biphenyl molecules are in conformational equilibrium with varying interplanar angles in solution, our static approach to the prediction of the experimental CD spectra is simply based on pairs of thermally populated, local-minimum structures, that is, the dynamic behavior of the systems or the vibrational wave functions are not considered. The relative energies computed at the SCS-MP2/TZVPP level in the gas phase or in acetonitrile solution using the conductor-like screening model (COSMO) were found to be accurate enough to calculate the thermal population of the relevant conformers. Although most of the CD signals mutually cancel out each other between a pair of aR- and aS-rotamers, the remaining Cotton effects due to a small preference for a single rotamer produce characteristic CD spectra. In general (and somewhat unexpectedly), the delicate cancellation effects in the CD spectra are accurately described by the theoretical approach, and the simulated CD spectra are in excellent agreement with the experimental ones though observed rotatory strengths being always smaller (by 5-20 times) than the theoretical data. Accordingly, slight preferences for the P (or aR)-configuration for Biph22 and M-configuration for Biph33 and Biph44 are determined. The preference for the opposite isomer in the case of Biph22 is due to larger attractive intramolecular interactions between the chiral alkyl groups. This is also consistent with the lower oxidation potential found for Biph22 (DeltaE approximately 0.1 V), as compared with those for Biph33 and Biph44. The CT complex formation of Biph22-44 with various acceptors was also studied by UV-vis and CD spectroscopic methods.     

Application of MCD spectroscopy and TD-DFT to a highly non-planar porphyrinoid ring system. New insights on red-shifted porphyrinoid spectral bands

The first magnetic circular dichroism (MCD) spectra are reported for tetraphenyltetraacenaphthoporphyrin (TPTANP). The impact on the electronic structure of steric interactions between the fused acenaphthalene rings and the meso-tetraphenyl substituents is explored based on an analysis of the optical spectra of the Zn(II) complex (ZnTPTANP) and the free base dication species ([H4TPTANP]2+). In the case of ZnTPTANP, significant folding of the porphyrinoid ligand induces a highly unusual MCD-sign reversal providing the first direct spectroscopic evidence of ligand nonplanarity. Density functional theory (DFT) geometry optimizations for a wide range of Zn(II) porphyrinoids based on the B3LYP functional and TD-DFT calculations of the associated UV-visible absorption spectra are reported, allowing a complete assessment of the MCD data. TPTANP complexes are found to fall into a class of cyclic polyenes, termed as soft MCD chromophores by Michl (J. Pure Appl. Chem. 1980, 52, 1549.), since the signs of the Faraday A1 terms observed in the MCD spectrum are highly sensitive to slight structural changes. The origin of an unusually large red shift of the main B (or Soret) band of MTPTANP (the most red shifted ever reported for fused-ring-expanded metal porphines) and of similar red shifts observed in the spectra of other peripherally crowded porphyrinoid complexes is also explored and explained on this basis.     

A study of the stereochemistry of 2-aryl-4,5-dimethyl-1,3-dioxolanes by cholesteric induction in nematic phases and circular dichroism spectroscopy

[Chemical reaction: See text] The circular dichroism spectra and the twisting ability of a series of 2-aryl-4,5-dimethyl-1,3-dioxolanes used as dopants in nematic solvents have been related to their absolute configuration. Whereas the circular dichroism (CD) spectra are deeply affected by the substituents present in the aromatic ring, which in several cases cause sign inversion, the helical twisting power beta is only marginally influenced. The values of beta also seem not very sensitive to the rotamer population around the aromatic ring; this indicates the predominant importance of the chiral dioxolane ring in determining the cholesteric induction. These facts can be explained by the different nature of the two observables: in CD, the chirality is read by the absorbing chromophore and is deeply influenced even by small changes of this group. In cholesteric induction we are dealing instead with chiral solute-solvent interactions that determine a twist in the solvent. In light of the present and previous results, this process seems predominantly determined by short-range interactions, which are modulated by the molecular shape. From a practical point of view, a configurational correlation using CD for the present series of compounds seems problematic, while the values of beta are nicely correlated to the absolute configurations. Calculations with the surface chirality method predict well the sign and order of magnitude of beta and their limited sensitivity to the phenyl substituents and rotamer population.     

Pseudomonas cytochrome c peroxidase. XIII. pH-denaturation of the enzyme.

The effect of pH on the oxidized Pseudomonas cytochrome c peroxidase molecule was studied by measuring the peroxidatic activity, the sedimentation velocity, the circular dichroic spectra in the far UV and Soret regions, and the optical absorption spectra of the enzyme in the pH range 2.5-13.0 at a constant ionic strength (micron = 0.1). The enzyme was stable in a narrow pH region, pH 6.0 - 7.4. In the low pH range the gross tertiary structure was observed to change quite simultaneously with the enzymatic activity and secondary structure. The optical absorption spectra indicated that there were no coordinated internal protein liqands in the 6th coordination positions of the heme prosthetic groups at the lowest pH studied. In the high pH range the secondary structure and the protein environment of hemes were observed to remain stable after the tertiary structure had changed and the activity had decreased. According to the optical absorption spectra the 6th internal protein ligands of hemes were retained at the highest pH studied.     

MAPping the chiral inversion and structural transformation of a metal-tripeptide complex having ni-superoxide dismutase activity

The metal abstraction peptide (MAP) tag is a tripeptide sequence capable of abstracting a metal ion from a chelator and binding it with extremely high affinity at neutral pH. Initial studies on the nickel-bound form of the complex demonstrate that the tripeptide asparagine-cysteine-cysteine (NCC) binds metal with 2N:2S, square planar geometry and behaves as both a structural and functional mimic of Ni superoxide dismutase (Ni-SOD). Electronic absorption, circular dichroism (CD), and magnetic CD (MCD) data collected for Ni-NCC are consistent with a diamagnetic Ni(II) center. It is apparent from the CD signal of Ni-NCC that the optical activity of the complex changes over time. Mass spectrometry data show that the mass of the complex is unchanged. Combined with the CD data, this suggests that chiral rearrangement of the complex occurs. Following incubation of the nickel-containing peptide in D(2)O and back-exchange into H(2)O, incorporation of deuterium into non-exchangeable positions is observed, indicating chiral inversion occurs at two of the α carbon atoms in the peptide. Control peptides were used to further characterize the chirality of the final nickel-peptide complex, and density functional theory (DFT) calculations were performed to validate the hypothesized position of the chiral inversions. In total, these data indicate Ni-SOD activity is increased proportionally to the degree of structural change in the complex over time. Specifically, the relationship between the change in CD signal and change in SOD activity is linear.     

Magnetic circular dichroism spectroscopy of antiferromagnetically coupled hetero-metallic rings [H2NR2][Cr7MF8(O2CCMe3)16

The optical and magnetic properties of the multi-metal rings [NH(2)R(2)][Cr(7)MF(8)(O(2)CCMe(3))(16)], where M = Cd(II), Mn(II) or Ni(II), have been studied using variable-field and variable-temperature magnetic circular dichroism (MCD) in the UV-visible spectra. Spectra of samples were recorded in a frozen organic matrix or cast in a polymethacrylate (PMMA) polymer film between 1.7 and 75 K. The spectra are characteristic of the Cr(III) ion (d(3)) in a rhombic field when M = Cd(II). In the case that M = Ni(II) additional optical transitions arise from the d(8) ion whereas for M = Mn(II) no additional transitions are observed. The influence of magnetic exchange is apparent from a change in the sign of the MCD signal between complexes in which the hetero-atom has a local spin moment greater, or less, than that of Cr(III), S = 3/2, namely, Mn(II), S = 5/2, and Ni(II), S = 1. The exchange coupling generates a manifold of thermally accessible electronic states that give rise to variations in MCD intensity as well as additional spectral features as the temperature is raised. Equations have been derived to relate the splittings observed in the optical spectrum to the single-ion ground state zero-field splittings of chromium(III). There is reasonable agreement between the sign and magnitude of the contribution to the cluster anisotropy from that of the single ion with values estimated from other techniques.     

Tautomeric structures, electronic spectra, acid-base properties of some 7-aryl-2,5-diamino-3(4-hydroxyphenyazo)pyrazolo[1,5-a]pyrimidine-6-carbonitriles, and effect of their copper(II) complex solutions on some bacteria and fungi

Infrared and electronic spectra were used to investigate the tautomerism of some azo compounds, in both the solid and solution states. It was found that the compounds exist in azo<==>hydrazone tautomeric equilibrium in solid and in solutions. The different bands displayed in the electronic spectra of the compounds in various organic solvents are assigned to the suitable electronic transitions. The solvatochromic behavior of the compounds was investigated by studying their visible spectra in pure and mixed organic solvents. DeltaG and formation constant, Kf, values of the molecular complexes formed in solution have been determined. Effect of concentration of the compounds in DMF and EtOH solutions has been investigated. The basicity and acidity constants of the different compounds were determined from the spectra of these compounds in aqueous-ethanolic solutions of varying pH values. Some complexes of copper(II) with these compounds in solution were tested as for their antibacterial and antifungal activity.     

An intramolecular ionic hydrogen bond stabilizes a cis amide bond rotamer of a ring-opened rapamycin-degradation product

Rapamycin (1), a macrolide immunosuppressant, undergoes degradation into ring-opened acid products 2 and 3 under physiologically relevant conditions. The unsaturated product (3) was isolated and studied in this work. Unlike 1, which has its amide primarily in a trans conformation in solution, 3 has both cis and trans conformations in approximately a 1:1 ratio in dimethyl sulfoxide (DMSO). The amount of cis rotamer was increased dramatically in the presence of an organic base such as triethylamine. The detailed NMR results indicate that the cis rotamer is stabilized through an intramolecular ionic hydrogen bond of the carboxylate anion with the tertiary alcohol as part of a nine-membered ring system. This hydrogen bond was characterized further in organic media and the trans-cis rotamer equilibria were used to estimate the relative bond strengths in several solvents. The additional stabilization arising from this ionic hydrogen bond in the cis rotamer was determined to be 1.4 kcal mol(-1) in DMSO-d6, 2.0 kcal mol(-1) in CD3CN and 1.1 kcal mol(-1) in CD3OD.     

Magnetic circular dichroism analysis of crude oil

Optical and magneto-optical properties of solutions of crude oil of different origin (i.e., taken from different fields) are studied in the visible and near-UV region of optical emission. Magnetic circular dichroism (MCD) spectra of oil are obtained in the vicinity of wavelengths of ~410 nm, 533 nm, and 576 nm. It is demonstrated that the intensity of the MCD signal depends on the origin of crude oil, and it is proportional to the oil concentration in the solution. The comparison of the magneto-optical spectroscopy data with the chemical composition of samples allows us to conclude that the observed magneto-optical activity is determined by the presence of VO²⁺ complexes in the oil samples studied. The revealed magneto-optical activity of conventional oil can form a basis of a new method for the analysis of the composition and properties of oil of different origin.     

A study of the electronic spectra of 9-fluorenone

The absorption and MCD spectra of 9-fluorenone are measured. The CD spectra of the β-cyclodextrin complex with 9-fluorenone are also measured. The assignment for the first (≈26.0 × 10³ cm^?1) and fourth (≈48.0 × ³ cm^?1) absorption band has been determined from the sign of the CD spectra by reference to the observed MCD spectra.     

Study of the intrinsic and conformational solvent effects on the chemical shift of the aldehydic proton in furfural and thiophenealdehyde

The chemical shifts of the aldehydic proton in furfural, thiophenealdehyde and benzaldehyde have been measured in fourteen solvents. The correlation of the chemical shifts of thiophenealdehyde and benzaldehyde is excellent (r = 0·996) while it is lower for furfural–benzaldehyde (r = 0·956). The long range coupling constant J_α5 of furiurai has been measured in twelve solvents and the rotameric mole fractions determined. The chemical shifts of individual rotamers are calculated and shown to correlate with benzaldehyde, (r = 0·992; 0·993). Only one rotamer is predominant for thiophenaldehyde in all solvents. The intrinsic solvent effects of the three aldehydes are similar.     

Synthesis and spectroscopic characterization of copper(II)-nitrito complexes with hydrotris(pyrazolyl)borate and related coligands

This study focuses on the geometric (molecular) structures, spectroscopic properties, and electronic structures of copper(II)-nitrito complexes as a function of second coordination sphere effects using a set of closely related coligands. With anionic hydrotris(pyrazolyl)borate ligands, one nitrite is bound to copper(II). Depending on the steric demand of the coligand, the coordination mode is either symmetric or asymmetric bidentate, which leads to different ground states of the resulting complexes as evident from EPR spectroscopy. The vibrational spectra of these compounds are assigned using isotope substitution and DFT calculations. The results demonstrate that nu sym(N-O) occurs at higher energy than nu asym(N-O), which is different from the literature assignments for related compounds. UV-vis absorption and MCD spectra are presented and analyzed with the help of TD-DFT calculations. The principal binding modes of nitrite to Cu(II) and Cu(I) are also investigated applying DFT. Using a neutral tris(pyrazolyl)methane ligand, two nitrite ligands are bound to copper. In this case, a very unusual binding mode is observed where one nitrite is eta1-O and the other one is eta1-N bound. This allows to study the properties of coordinated nitrite as a function of binding mode in one complex. The N-coordination mode is easily identified from vibrational spectroscopy, where N-bound nitrite shows a large shift of nu asym(N-O) to >1400 cm-1, which is a unique spectroscopic feature. The optical spectra of this compound exhibit an intense band around 300 nm, which might be attributable to a nitrite to Cu(II) CT transition. Finally, using a bidentate neutral bis(pyrazolyl)methane ligand, two eta1-O coordinated nitrite ligands are observed. The vibrational and optical (UV-vis and MCD) spectra of this compound are presented and analyzed.     

INDO/SCF-CI calculations and structural spectroscopic studies of some complexes of 4-hydroxyacetanilide

The electronic energies among different possible structures of 4-hydroxyacetanilide (paracetamol) (PA) molecule, were calculated using INDO method and it has been concluded that its structure has C(s) point group symmetry of the cis-form. The ionization potential, electron affinity, dipole moment and binding energy have been calculated. The calculated electronic transitions of the cis-form of PA using SCF-CI method have good coincidence with the electronic absorption spectrum. The temperature effect on the electronic spectrum of PA confirms the presence of one conformer only. The electronic spectra of PA compound were studied in different polar- and non-polar solvents and the hydrogen bonding as well as the orientation energies of the polar solvents were determined from the mixed solvents studies. Complexes of PA with various metal ions such as, Cu(II), Zn(II) or Fe(II) ions of ratio 2:1, respectively, have been prepared and their structure has been confirmed by elemental analysis, atomic absorption spectra, IR spectra and (1)H NMR spectra and finally it can be concluded that the structure of the complexes has C2h point group symmetry in which two PA molecules are chelated to any one of the metal ions, Cu(II), Zn(II) and Fe(II) ions.     

Determination of the rα structure corrected for correlated deformation and of the bond contributions to the degree of order of 1,3-butadiene by NMR of the partially oriented molecule

Protons with¹³C-satellite spectra from 1,3-butadiene dissolved in four different liquid-crystal solvents have been analyzed. The observed direct couplings, corrected for harmonic vibration as well as for correlated deformation, show that the trans isomer is dominant but that there must be a low concentration (2%) of a second rotamer, probably close to cis. The structure of the trans isomer is determined and the bond contributions to the order tensor are measured.     

Mechanism of change in enantiomer migration order of enantioseparation of tartaric acid by ligand exchange capillary electrophoresis with Cu(II) and Ni(II)-D-quinic acid systems

The mechanism of change in the enantiomer migration order (EMO) of tartarate on ligand exchange CE with Cu(II)- and Ni(II)-D-quinic acid systems was investigated thoroughly by circular dichroism (CD) spectropolarimetry. The (13) C NMR spectra of solutions containing D-quinate (pH 5.0) with Cu(II) or Ni(II) revealed the coordination of carboxylate and hydroxyl groups on D-quinate. The D-quinic acid concentration dependence of the CD spectra at a fixed Cu(II) concentration at pH 5.0 indicates that the 1:1, 1:2 and 1:3 Cu(II)-D-quinate complexes were formed with an increase in the concentration of D-quinic acid. The CD spectral behavior revealed that D-tartarate is selectively coordinated to the 1:1 complex to give the 1:1:1 Cu(II)-D-quinate-D-tartarate ternary complex while L-tartarate is selectively bound to the 1:2 and 1:3 complexes to form the 1:2:1 ternary complex. In the Ni(II)-D-quinic acid system, it became apparent that the 1:2 Ni(II)-D-quinate complex is mainly formed in the wide range of D-quinic acid concentration at pH 5.0 and D-tartarate is selectively coordinated to the 1:2 complex to form the 1:2:1 ternary complex. The change in EMO of tartarate on ligand exchange CE was explainable by the change in coordination selectivity for D- and L-tartarates in the Cu(II)- and Ni(II)-D-quinic acid systems depending on the compositions of the complexes formed in BGE.     

NMR Studies of Solvent Effect on Internal Rotation in Some Non-Symmetrical 1,2-Disubstituted Ethanes

The A₂B₂ system of PMR spectra of 3-bromopropionic acid, 3-chloropropionic acid, 3-bromopropionitrile, and 3-chloropropionitrile exhibit appreciable solvent effect at room temperature. NMR spectroscopic parameters of A₂B₂ spectrum as well as physical parameters related to internal rotation, i. e. the highest energy barrier and the energy difference between rotamers, were determined for these compounds in the medium of various solvents. It was found that in the case of 3-bromopropionic acid, the trans rotamer is more stable than the gauche rotamers, and the energy difference decreases with increasing dielectric constant of solvent. While in the case of 3-bromopropionitrile, the gauche rotamers were found to be more stable than the trans rotamer and the energy difference increases with increasing dielectric constant of solvent. In the remaining two compounds, 3-chloropropionic acid and 3-chloropropionitrile, both trans and gauche rotamers are equally stable in a solvent of low dielectric constant, however in a solvent of higher dielectric constant, the gauche rotamers become more stable than the trans rotamer and the energy difference becomes more pronounced with increasing dielectric constant of solvent.     

Effects of organic and aqueous solvents on the electronic absorption and fluorescence of chloroaluminum (III) tetrasulphonated naphthalocyanine

The effects of various solvents on the ground and excited states of chloroaluminum (III) tetrasulphonated naphthalocyanine (AlNcS(4)) were studied. Both the absorbance and fluorescence spectra were found to be influenced by the hydrogen bond donating ability of various solvents. As the hydrogen bond donating ability of the solvent increased, hypsochromic and bathochromic shifts in the absorbance and fluorescence spectra were observed in protic and aprotic solvents respectively. Plots of the absorbance and fluorescence maxima versus the E(T)(30) solvent parameter showed linear relationships in binary mixtures of protic-protic (methanol-H(2)O) and aprotic-protic (DMSO-H(2)O) solvents. Aggregation was indicated by a broad band in the ground state absorption spectra and a low quantum efficiency 0.04 relative to the efficiency observed in organic solvents. A face-to-face conformation of the monomeric subunits of the dimer is suggested due to the red-shifted absorbance band. The acid-base properties of the dye were studied and were indicative of a multi-step process. In acidic conditions (pH 1), protonation of the bridging nitrogen atoms was identified by a broad band appearing red-shifted to those obtained at higher pH values. Under slightly acidic conditions a pKa value of 6.7 was determined for one of the meso-nitrogen. In alkaline conditions a pKa of 11.5 was determined for another meso-nitrogen and a second fluorescence band emerged at 804 nm, red-shifted to the emission maxima.