Kinetics study of the OH + alkene --> H2O + alkenyl reaction class

In this paper we report on the kinetics of hydrogen abstraction for the OH + alkene reaction class, using the reaction class transition state theory (RC-TST) combined with the linear energy relationship (LER) and the barrier height grouping (BHG) approaches. Parameters for the RC-TST were derived from theoretical calculations using a set of 15 reactions representing the hydrogen abstractions from the terminal and nonterminal carbon sites of the double bond of alkene compounds. Both the RC-TST/LER, where only reaction energy is needed at either density functional theory BH&HLYP or semiempirical AM1 levels, and RC-TST/BHG, where no additional information is required, are found to be promising methods for predicting rate constants for a large number of reactions in this reaction class. Detailed error analyses show that, when compared to explicit theoretical calculations, the averaged systematic errors in the calculated rate constants using both the RC-TST/LER and RC-TST/BHG methods are less than 25% in the temperature range 300-3000 K. The estimated rate constants using these approaches are in good agreement with available data in the literature.     

Kinetics of 1,5-hydrogen migration in alkyl radical reaction class

Kinetics of the 1,5-intramolecular hydrogen migration in the alkyl radicals reaction class has been studied using the reaction class transition state theory combined with the linear energy relationship (LER) and the barrier height grouping (BHG) approach. The high pressure limits of the rate constants for the reference reaction of 1-pentyl → 1-pentyl, calculated by the Canonical Variational Transition State Theory (CVT) with the Small Curvature Tunneling (SCT), are taken from the literature. Direct comparison with available experimental data indicates that the RC-TST/LER, where only reaction energy is needed, can predict rate constants for any reaction in this reaction class with excellent accuracy. Specifically for this reaction class, the RC-TST/LER method has less than 65% systematic errors in the predicted rate constants when compared to explicit rate calculations.     

Ab initio study on the kinetics of hydrogen abstraction for the H+alkene-->H2+alkenyl reaction class

Kinetics of the hydrogen abstraction reaction class of the H+alkene has been studied using the reaction class transition state theory (RC-TST) combined with the linear energy relationship (LER) and the barrier height grouping (BHG) approach. The rate constants for the reference reaction, H+C2H4, were obtained by the canonical variational transition state theory (CVT) with the small curvature tunneling (SCT) correction in the temperature range of 300-3000 K. Combined with these data, both the RC-TST/LER, where only reaction energy is needed, and RC-TST/BHG, where no other information is needed, are found to be promising methods for predicting rate constants for a large number of reactions in this reaction class. Our analysis indicates that less than 50% systematic errors on the average exist in the predicted rate constants using the RC-TST/LER or RC-TST/BHG method while in comparison to explicit rate calculations the differences are less than 100% or a factor of 2 on the average.     

烷基环己烷夺氢反应类的动力学研究

应用反应类过渡态理论(RC-TST)研究了氢自由基抽取烷基环己烷氢的反应类,给出了该类反应的动力学参数.通过研究该反应类中的14个代表反应,分析得到了RC-TST方法所需要的各种参数,建立了该类反应的线性能量关系式(LER).应用RC-TST/LER方法计算得到速率常数与TST/Eckart方法计算结果吻合很好,分析表明RC-TST/LER方法对于准确预测夺氢反应类的速率常数十分有效,可以节约大量计算成本.     

Kinetics of the hydrogen abstraction OH + alkane --> H2O + alkyl reaction class: an application of the reaction class transition state theory

This paper presents an application of the reaction class transition state theory (RC-TST) to predict thermal rate constants for hydrogen abstraction reactions of the type OH + alkane --> HOH + alkyl. We have derived all parameters for the RC-TST method for this reaction class from rate constants of 19 representative reactions, coupling with linear energy relationships (LERs), so that rate constants for any reaction in this class can be predicted from its reaction energy calculated at either the AM1 semiempirical or BH&HLYP/cc-pVDZ level of theory. The RC-TST/LER thermal rate constants for selected reactions are in good agreement with those available in the literature. Detailed analyses of the results show that the RC-TST/LER method is an efficient method for accurately estimating rate constants for a large number of reactions in this class. Analysis of the LERs leads to the discovery of the beta-carbon radical stabilization effect that stabilizes the transition state of any reaction in this class that yields products having one or more beta-carbons, and thus leads to the lower barrier for such a reaction.     

Kinetics of the hydrogen abstraction CHO + Alkane → HCHO + Alkyl reaction class: an application of the reaction class transition state theory

The kinetics of the hydrogen abstraction at alkanes by formyl radicals is investigated using the reaction class transition state theory (RC-TST) approach combined with the linear energy relationship (LER) or the barrier height grouping (BHG). The rate constants of a reaction in this class can be estimated through those of the reference reaction, CHO + C₂H₆, which are obtained from rate constants of the reaction that involves the smallest species, namely CHO + CH₄, using the explicit RC-TST scaling. The thermal rate constants of this smallest reaction are evaluated at the canonical variational transition state theory (CVT) with the corrections from the small-curvature tunneling (SCT) and hindered rotation (HR) treatments. Our analyses indicate that less than 40% systematic errors, on the average, exist in the predicted rate constants using both the LER approach, where only reaction energy is needed, and the BHG approach, where no additional information is needed; while comparing to explicit rate calculations the differences are less than 60%. Contribution to Mark S. Gordon 65th Birthday Festschrift Issue.     

Kinetics of the hydrogen abstraction *CH3 + alkane --> CH4 + alkyl reaction class: an application of the reaction class transition state theory

Kinetics of the hydrogen abstraction reaction (*)CH(3) + CH(4) --> CH(4) + (*)CH(3) is studied by a direct dynamics method. Thermal rate constants in the temperature range of 300-2500 K are evaluated by the canonical variational transition state theory (CVT) incorporating corrections from tunneling using the multidimensional semiclassical small-curvature tunneling (SCT) method and from the hindered rotations. These results are used in conjunction with the Reaction Class Transition State Theory/Linear Energy Relationship (RC-TST/LER) to predict thermal rate constants of any reaction in the hydrogen abstraction class of (*)CH(3) + alkanes. Our analyses indicate that less than 40% systematic errors on the average exist in the predicted rate constants using the RC-TST/LER method while comparing to explicit rate calculations the differences are less than 100% or a factor of 2 on the average.     

Kinetics of the hydrogen abstraction R?OH + H → R?O• + H2 reaction class

This paper presents an application of the reaction class transition state theory (RC‐TST) to predict thermal rate constants for the hydrogen abstraction R? OH + H → R? O^? + H₂ reaction class, where R is an alkyl group. We have derived all parameters for the RC‐TST method for this reaction class from rate constants of 19 representative reactions, coupling with linear energy relationships (LERs) and the barrier height grouping (BHG) approach. Error analyses indicate that the RC‐TST/LER, where only reaction energy is needed, and RC‐TST/BHG, where no other information is needed, can predict rate constants for any reaction in this reaction class with satisfactory accuracy for combustion modeling. Specifically for this reaction class, the RC‐TST/LER method has less than 25% systematic errors in the predicted rate constants, whereas the RC‐TST/BHG method has less than 35% error when compared to explicit rate calculations. © 2010 Wiley Periodicals, Inc. Int J Chem Kinet 42: 414–429, 2010     

Kinetics of the C-C bond beta scission reactions in alkyl radicals

High pressure limits of thermal rate constants of four C-C bond beta scission reactions of propyl, 1-butyl, 2-butyl and isobutyl radicals were calculated using the canonical variational transition state theory (CVT) with a multi-dimensional small-curvature tunneling (SCT) correction over the temperature range of 300-3000 K. The CCSD(T)/cc-pVDZ//BH&HLYP/cc-pVDZ method was used to provide necessary potential energy surface information. Rate constants for these reactions were used to extrapolate rate constants for reactions in larger alkyls where experimental data are available using the Reaction Class Transition State Theory (RC-TST). Excellent agreement with experimental data confirms the validity of the RC-TST methodology and the accuracy of the calculated kinetic data in this study.     

A linear energy relationship between activation energy and absolute hardness: a case study with the O(3P) atom-addition reactions to polyaromatic hydrocarbons

A new linear relationship between absolute hardness and global activation energy of O-addition reaction to a series of aromatic hydrocarbons (benzene, naphthalene, phenanthrene, and pyrene) is presented. A total of seventeen O((3)P)-addition reactions were evaluated. Thermal rate constants were calculated for each elementary reaction and used to estimate the total rate constants. This information was employed to obtain the global activation energy. A new linear relationship is shown and is estimated that it can be used within the RC-TST framework to predict relative rate constants for any reaction within an O-addition to PAH class from just absolute hardness values.     

Kinetics of the hydrogen abstraction R−OH + H → R•−OH + H2 reaction class: An application of the reaction class transition state theory

This paper presents an application of the reaction class transition state theory (RC‐TST) to predict thermal rate constants for hydrogen abstraction reactions of the type R‐OH + H → R^?‐OH + H₂. We have derived all parameters for the RC‐TST method with linear energy relationships (LERs) and the barrier height grouping (BHG) approach for this reaction class from rate constants of 37 representative reactions divided in two types of hydrogen abstraction, namely from α carbon sites and non‐α carbon sites two training sets. Error analyses indicate that the RC‐TST/LER, where only reaction energy is needed, and RC‐TST/ BHG, where no other information is needed, can predict rate constants for any reaction in this reaction class with satisfactory accuracy for combustion modeling. Specifically for this reaction class, the RC‐TST/LER and RC‐TST/BHG methods have, respectively, less than 40% and 90% systematic errors in the predicted rate constants, when compared to the explicit full TST/Eckart method. The branching ratio analysis shows that in the low‐temperature regime α abstractions are dominant, whereas, for T > 1500 K, abstractions at other sites become more important. © 2010 Wiley Periodicals, Inc. Int J Chem Kinet 43: 78–98, 2011     

Quasiclassical trajectory study of the C(1D) + H2 reaction and isotopomeric variants: kinetic isotope effect and CD/CH branching ratio

The recently proposed ab initio single-sheeted double many-body expansion potential energy for the methylene molecule has been used to perform quasiclassical trajectory (QCT) calculations for the title reaction. Thermal and initial state-specific (v = 0, j = 0) rate constants for the C((1)D) + H(2)/HD/D(2) reactions have been obtained over a wide range of temperatures. Cross sections for the reaction C((1)D) + H(2) and its deuterated isotopes have also been calculated, as well as the CD/CH branching ratios for the C((1)D) + HD reaction. It is found that the CD + H product channel in the C((1)D) + HD reaction is preferred relative to the CH + D channel. The estimated rate constants are predicted to be in the order k(H2) > k(HD) > k(D2) and the calculated cross sections and rate constants compared with available theoretical and experimental data.     

Kinetics and dynamics of the NH3 + H → NH2 + H2 reaction using transition state methods, quasi-classical trajectories, and quantum-mechanical scattering

On a recent analytical potential energy surface developed by two of the authors, an exhaustive kinetics study, using variational transition state theory with multidimensional tunneling effect, and dynamics study, using both quasi-classical trajectory and full-dimensional quantum scattering methods, was carried out to understand the reactivity of the NH(3) + H → NH(2) + H(2) gas-phase reaction. Initial state-selected time-dependent wave packet calculations using a full-dimensional model were performed, where the total reaction probabilities were calculated for the initial ground vibrational state and for four excited vibrational states of ammonia. Thermal rate constants were calculated for the temperature range 200-2000 K using the three methods and compared with available experimental data. We found that (a) the total reaction probabilities are very small, (b) the symmetric and asymmetric N-H stretch excitations enhance the reactivity, (c) the quantum-mechanical calculated thermal rate constants are about one order of magnitude smaller than the transition state theory results, which reproduce the experimental evidence, and (d) quasi-classical trajectory calculations, which were performed with the main goal of analyzing the influence of the zero-point energy problem on the final dynamics results, reproduce the quantum scattering calculations on the same surface.     

A computational study on the amine-oxidation mechanism of monoamine oxidase: insight into the polar nucleophilic mechanism

The proposed polar nucleophilic mechanism of MAO was investigated using quantum chemical calculations employing the semi-empirical PM3 method. In order to mimic the reaction at the enzyme's active site, the reactions between the flavin and the p-substituted benzylamine substrate analogs were modeled. Activation energies and rate constants of all the reactions were calculated and compared with the published experimental data. The results showed that electron-withdrawing groups at the para position of benzylamine increase the reaction rate. A good correlation between the log of the calculated rate constants and the electronic parameter (sigma) of the substituent was obtained. These results agree with the previous kinetic experiments on the effect of p-substituents on the reduction of MAO-A by benzylamine analogs. In addition, the calculated rate constants showed a correlation with the rate of reduction of the flavin in MAO-A. In order to verify the results obtained from the PM3 method single-point B3LYP/6-31G*//PM3 calculations were performed. These results demonstrated a strong reduction in the activation energy for the reaction of benzylamine derivatives having electron-withdrawing substituents, which is in agreement with the PM3 calculations and the previous experimental QSAR study. PM3 and B3LYP/6-31G* energy surfaces were obtained for the overall reaction of benzylamine with flavin. Results suggest that PM3 is a reasonable method for studying this kind of reaction. These theoretical findings support the proposed polar nucleophilic mechanism for MAO-A.     

Comprehensive theoretical studies on the CF3H dissociation mechanism and the reactions of CF3H with OH and H free radicals

The potential energy surfaces for the CF3H unimolecular dissociation reaction and reactions of CF3H with free radical OH and H were investigated at the B3LYP6-311++G(**) and QCISD(T)6-311++G(**) levels and by the G3B3 theory. All the possible stationary and first-order saddle points along the reaction paths were verified by the vibrational analysis. The calculations account for all the product channels. The reaction enthalpies obtained at the G3B3 level are in good agreement with the available experiments. Canonical transition-state theory with Wigner tunneling correction was used to predict the rate constants for the temperature range of 298-2500 K without any artificial adjustment, and tshe computed rate constants for elementary channels can be accurately fitted with three-parameter Arrhenius expressions. The theoretical rate constants of the CF3H+H reaction agree with the available experimental data very well. The theoretical and experimental rate constants for the CF3H+OH reaction are in reasonable agreement. The H abstraction of CF3H by OH is found to be the main reaction channel for the CF3H fire extinguishing reactions while the CF3H unimolecular dissociation reaction plays a negligible role.     

Kinetic study on the H + SiH4 abstraction reaction using an ab initio potential energy surface

Variational transition state theory calculations with the correction of multidimensional tunneling are performed on a 12-dimensional ab initio potential energy surface for the H + SiH(4) abstraction reaction. The surface is constructed using a dual-level strategy. For the temperature range 200-1600 K, thermal rate constants are calculated and kinetic isotope effects for various isotopic species of the title reaction are investigated. The results are in very good agreement with available experimental data.     

Adiabatic capture theory applied to N+NH-->N2+H at low temperature

The adiabatic capture centrifugal sudden approximation (ACCSA) has been applied to the ground state reaction N+NH-->N2+H over the temperature range 2-300 K using an existent potential energy surface. The resultant thermal rate constants are in agreement with available rate constants from quasi-classical trajectory calculations but are significantly larger than the available experimentally derived rate. The calculated rate constants monotonically increase with increasing temperature but could only be approximately described with a simple Arrhenius-like form. Subtle quantum effects are evident in the initial rotational state resolved cross sections and rate constants.     

Accurate quantum wave packet calculations for the F + HCl → Cl + HF reaction on the ground 1(2)A' potential energy surface

We present converged exact quantum wave packet calculations of reaction probabilities, integral cross sections, and thermal rate coefficients for the title reaction. Calculations have been carried out on the ground 1(2)A' global adiabatic potential energy surface of Deskevich et al. [J. Chem. Phys. 124, 224303 (2006)]. Converged wave packet reaction probabilities at selected values of the total angular momentum up to a partial wave of J = 140 with the HCl reagent initially selected in the v = 0, j = 0-16 rovibrational states have been obtained for the collision energy range from threshold up to 0.8 eV. The present calculations confirm an important enhancement of reactivity with rotational excitation of the HCl molecule. First, accurate integral cross sections and rate constants have been calculated and compared with the available experimental data.     

Time-resolved gas-phase kinetic and quantum chemical studies of the reaction of silylene with nitric oxide

Time-resolved kinetic studies of the reaction of silylene, SiH2, generated by laser flash photolysis of phenylsilane, have been carried out to obtain rate constants for its bimolecular reaction with NO. The reaction was studied in the gas phase over the pressure range 1-100 Torr in SF6 bath gas at five temperatures in the range 299-592 K. The second-order rate constants at 10 Torr fitted the Arrhenius equation log(k/cm3 molecule(-1) s(-1)) = (-11.66 +/- 0.01) + (6.20 +/- 0.10 kJ mol(-1))/RT ln 10 The rate constants showed a variation with pressure of a factor of ca. 2 over the available range, almost independent of temperature. The data could not be fitted by RRKM calculations to a simple third body assisted association reaction alone. However, a mechanistic model with an additional (pressure independent) side channel gave a reasonable fit to the data. Ab initio calculations at the G3 level supported a mechanism in which the initial adduct, bent H2SiNO, can ring close to form cyclo-H2SiNO, which is partially collisionally stabilized. In addition, bent H2SiNO can undergo a low barrier isomerization reaction leading, via a sequence of steps, ultimately to dissociation products of which the lowest energy pair are NH2 + SiO. The rate controlling barrier for this latter pathway is only 16 kJ mol(-1) below the energy of SiH2 + NO. This is consistent with the kinetic findings. A particular outcome of this work is that, despite the pressure dependence and the effects of the secondary barrier (in the side reaction), the initial encounter of SiH2 with NO occurs at the collision rate. Thus, silylene can be as reactive with odd electron molecules as with many even electron species. Some comparisons are drawn with the reactions of CH2 + NO and SiCl2 + NO.     

Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories

Ab initio CCSD(T) calculations of intermediates and transition states on the singlet and triplet C3H2 potential energy surfaces extrapolated to the complete basis set limit are combined with statistical computations of energy-dependent rate constants of the C(3P)+C2H2 reaction under crossed molecular beam conditions. Rice-Ramsperger-Kassel-Marcus theory is applied for isomerization and dissociation steps within the same multiplicity and radiationless transition and nonadiabatic transition state theories are used for singlet-triplet intersystem crossing rates. The calculated rate constants are utilized to predict product branching ratios. The results demonstrate that, in qualitative agreement with available experimental data, c-C3H+H and C3+H2 are the most probable products at low collision energies, whereas l-C3H+H becomes dominant at higher Ec above approximately 25 kJ/mol.