Near ab initio quality molecular electrostatic potential maps using hybridization displacement charges at PM3 level and effects of geometrical changes in amino groups

Charge distributions, dipole moments, and molecular electrostatic potentials (MEP) around several molecules consisting of carbon, nitrogen, oxygen, fluorine, sulfur, and chlorine atoms were studied using the PM3 semiempirical method and the results compared with those obtained using ab initio calculations at the RHF/6‐31G** level. Thus it is shown that relative MEP values near different atoms can be obtained using hybridization displacement charges (HDC) obtained by employing PM3 density matrices that usually agree quite satisfactorily with the ab initio ones. Further, positions of ab initio MEP minima are correctly located and the corresponding relative MEP values usually correctly predicted using the PM3(HDC) charges distributed continuously in three dimensions according to the forms of squares of valence s atomic orbitals. The necessary parameters for HDC calculations using the PM3 method were optimized. It is shown how within the frameworks of both PM3 and AM1 methods the π electrons or lone pairs associated with amino group nitrogen atoms and ring atoms can be satisfactorily treated in different situations. © 2001 John Wiley & Sons, Inc. Int J Quant Chem 82: 299–312, 2001     

Terminal end-on coordination of dinitrogen versus isoelectronic CO: A comparison using the charge displacement analysis

The metal dinitrogen bonding in a wide series of terminal end-on dinitrogen complexes is investigated with the charge displacement analysis based on natural orbitals of chemical valence (CD-NOCV). The effect of the σ donation and π backdonation on the N N bond are discussed and compared with the observations for a series of carbonyl complexes, published in 2016 by Tarantelli et al. The σ donation is relative invariant over the series of dinitrogen complexes and has no significant effect on the N N bond strength, whereas the π backdonation causes a considerable elongation of the N N bond. Some uncommon examples of weakly bound dinitrogen with blue-shifted stretching frequency compared to free N₂ (ν = 2330 cm⁻¹) are known. The dinitrogen bonding in these complexes is simulated with a point charge. Apparently, electrostatics account for the shortened N─N bond in these systems.     

Analysis of the transferability of atomic multipoles for amino acids in modeling macromolecular charge distribution from fragments

Cumulative Atomic Multipole Moments were calculated for all natural amino acids and symmetric cyclic hexapeptides within Self‐Consisted Field (SCF) and Density Functional Theory (DFT) approaches using a standard 6‐31G(d,p) basis set. These data were used to analyze in detail the quality and the conformational and the intermolecular transferability of molecular charge distributions expressed in the atomic multipole form. Intermolecular interaction energies were reproduced reasonably by CAMM transformed from other conformations. Good transferability of CAMM based model was also achieved between similar molecular environments, which opens a route to modeling electrostatic effects in highly symmetric (e.g., crystalline) systems. Transferability deficiencies of various charge distribution models were analyzed and attributed to different levels of multipole expansion. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1082–1097, 2001     

Atomic multipoles: Electrostatic potential fit,local reference axis systems,and conformational dependence

Currently, all standard force fields for biomolecular simulations use point charges to model intermolecular electrostatic interactions. This is a fast and simple approach but has deficiencies when the electrostatic potential (ESP) is compared to that from ab initio methods. Here, we show how atomic multipoles can be rigorously implemented into common biomolecular force fields. For this, a comprehensive set of local reference axis systems is introduced, which represents a universal solution for treating atom‐centered multipoles for all small organic molecules and proteins. Furthermore, we introduce a new method for fitting atomic multipole moments to the quantum mechanically derived ESP. This methods yields a 50–90% error reduction compared to both point charges fit to the ESP and multipoles directly calculated from the ab initio electron density. It is shown that it is necessary to directly fit the multipole moments of conformational ensembles to the ESP. Ignoring the conformational dependence or averaging over parameters from different conformations dramatically deteriorates the results obtained with atomic multipole moments, rendering multipoles worse than partial charges. © 2012 Wiley Periodicals, Inc.     

Isolation and characterization of therapeutic antibody charge variants using cation exchange displacement chromatography

In this report, we have demonstrated the isolation and enrichment of charge variants of a monoclonal antibody IgG1 using cation exchange displacement chromatography. We successfully achieved the separation of acidic, main and basic charge variants with high recovery (>70%) and purity (>90%) by using a commercially available stationary phase in conjunction with a commercially available displacer. In addition, we have isolated and enriched a trace methionine-oxidized variant of the monoclonal antibody allowing a secondary means of identification of this variant while providing sufficient enrichment for further analysis, stability tests and potency determination. Further characterization of the displacement trains by SEC indicate the possibility of enrichment of high and low molecular weight species. Glycan analysis of the displacement fractions indicates minimal variation in glycan distribution patterns among a wide spectrum of charge variants. These results provide a case study demonstrating the utility of cation exchange displacement chromatography as a viable approach to isolate and enrich antibody charge variants for enhanced molecular characterization.     

On the inter‐instrument and inter‐laboratory transferability of a tandem mass spectral reference library: 1. Results of an Austrian multicenter study

The inter‐instrument and inter‐laboratory transferability of a tandem mass spectral reference library originally built on a quadrupole‐quadrupole‐time‐of‐flight instrument was examined. The library consisted of 3759 MS/MS spectra collected from 402 reference compounds applying several different collision‐energy values for fragmentation. In the course of the multicenter study, 22 test compounds were sent to three different laboratories, where 418 tandem mass spectra were acquired using four different instruments from two manufacturers. The study covered the following types of tandem mass spectrometers: quadrupole‐quadrupole‐time‐of‐flight, quadrupole‐quadrupole‐linear ion trap, quadrupole‐quadrupole‐quadrupole, and linear ion trap‐Fourier transform ion cyclotron resonance mass spectrometer. In each participating laboratory, optimized instrumental parameters were gathered solely from routinely applied workflows. No standardization procedure was applied to increase the inter‐instrument comparability of MS/MS spectra. The acquired tandem mass spectra were matched against the established reference library using a sophisticated matching algorithm, which is presented in detail in a companion paper. Correct answers, meaning that the correct compound was retrieved as top hit, were obtained in 98.1% of cases. For the remaining 1.9% of spectra, the correct compound was matched at second rank. The observed high percentage of correct assignments clearly suggests that the developed mass spectral library search approach is to a large extent platform independent. Copyright © 2009 John Wiley & Sons, Ltd.     

Modified hybridization displacement charge scheme for π‐electron systems: Study of molecular electrostatic potential maps

A modified form of the hybridization displacement charge scheme (HDC‐PI) suitable for application to molecules where π‐electrons play the dominant role in controlling molecular electrostatic potential (MEP) features is presented. This modified scheme does not only preserve the atomic contributions to molecular dipole moment but also it represents the two opposing components of atomic hybridization dipole moment arising due to π‐electrons, one due to the π‐electrons located above the molecular plane and the other due to those located below the plane, so as to reproduce MEP features appropriately. The method has been applied within the framework of the AMl and MNDO methods to several different types of molecules containing π‐electrons demonstrating its very satisfactory performance. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 71: 191–200, 1999     

The use of the pH at the point of zero charge for characterizing the properties of oxide hydroxides

The modern theoretical views on the point of zero charge of the oxide hydroxide surface are considered. Methods for determination of the pH of the point of zero charge and the use of this value to characterize the properties of oxide hydroxides are described. Examples of using the pH of the point of zero charge in studies of oxide anodes and amorphous oxide hydroxide sorbents are presented. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1029–1035, June, 1999.     

氢氧化铝镁钠米颗粒的零电荷点及电荷密度研究

探讨了电位滴定(PT)法测定的零电荷点的物理意义, 认为是零净电荷点(ZPNC)。并对零净电荷点pH(pHZPNC), 零可变电荷点pH(pHZPVC), 永久电荷密度(σP), 可变电荷密度(σV)和净电荷密度(σT)之间的关系进行了理论分析。用PT法测定了氢氧化铝镁纳米颗粒的pHZPNC和σP, 探讨了电解质浓度和pH对各电化学性质的影响规律。另外, 还考察了CO3^2^-对PT法测定结果的影响。     

An experimental and computational study on intramolecular charge transfer: a tetrathiafulvalene-fused dipyridophenazine molecule

To study the electronic interactions in donor-acceptor (D-A) ensembles, D and A fragments are coupled in a single molecule. Specifically, a tetrathiafulvalene (TTF)-fused dipyrido[3,2-a:2',3'-c]phenazine (dppz) compound having inherent redox centers has been synthesized and structurally characterized. Its electronic absorption, fluorescence emission, photoinduced intramolecular charge transfer, and electrochemical behavior have been investigated. The observed electronic properties are explained on the basis of density functional theory.     

原子核强度电势和原子价层电量对元素电负性的标度

根据万有引力势与电势的关系式和系统的对比质电比(单位电量的质量)的物理意义, 定义了系统的强度电势——单位质量的电势. 研究表明, 元素电负性XSc与原子核在原子边界面上的强度电势Vic和价层电子电量qcj成线性关系. 采用回归分析法, 对周期表中除零族、氢及放射性元素之外的77种元素的Pauling电负性(XP)进行回归分析, 得到了一个无量纲的综合性的电负性计算公式, 相关系数(R=0.9844)和回归方程F检验的显著性水平(Sig.=0.0000)表明, XSc与Vic和qcj密切相关, 77种元素的拟合值与XP十分接近, 平均绝对误差仅为0.084; 并预测出较为合理的稀有气体元素的电负性. 用该式可以方便而更准确地计算除氢以外的所有元素的电负性; 同时也给出一条获取离子电负性和基团电负性的新途径.     

Sliding-friction electrification of polymers and charge decay

Linear low-density polyethylene (LLDPE) and polypropylene (PP) were charged by sliding under a cylindrical aluminium contact. The surface charge accumulation on the polymer films was time dependent, and a function of the sliding velocity, metal contact force, and film type. The surface potential increased linearly with velocity in the range 0.33–0.75 m/s, and showed a square-root dependence on the contact force up to 6.5 N. Thermally stimulated charge decay (TSCD) studies showed longer charge lifetimes in samples friction-charged on one side than in corona-charged samples. Friction charging creates deeper near-surface traps than are normally present in the polymers. Charge stability is further imporved by simultaneously friction charging both surfaces of the films, increasing the half-value charge decay temperature (T_1/2) by 27°C and 37°C over that in corona-charged samples (i.e., to 98°C and 120°C for LLDPE and PP, respectively). These monopolarity electrets should prove useful in charge storage devices.     

Electronegativity equalization method: parameterization and validation for organic molecules using the Merz-Kollman-Singh charge distribution scheme

The electronegativity equalization method (EEM) was developed by Mortier et al. as a semiempirical method based on the density-functional theory. After parameterization, in which EEM parameters A(i), B(i), and adjusting factor kappa are obtained, this approach can be used for calculation of average electronegativity and charge distribution in a molecule. The aim of this work is to perform the EEM parameterization using the Merz-Kollman-Singh (MK) charge distribution scheme obtained from B3LYP/6-31G* and HF/6-31G* calculations. To achieve this goal, we selected a set of 380 organic molecules from the Cambridge Structural Database (CSD) and used the methodology, which was recently successfully applied to EEM parameterization to calculate the HF/STO-3G Mulliken charges on large sets of molecules. In the case of B3LYP/6-31G* MK charges, we have improved the EEM parameters for already parameterized elements, specifically C, H, N, O, and F. Moreover, EEM parameters for S, Br, Cl, and Zn, which have not as yet been parameterized for this level of theory and basis set, we also developed. In the case of HF/6-31G* MK charges, we have developed the EEM parameters for C, H, N, O, S, Br, Cl, F, and Zn that have not been parameterized for this level of theory and basis set so far. The obtained EEM parameters were verified by a previously developed validation procedure and used for the charge calculation on a different set of 116 organic molecules from the CSD. The calculated EEM charges are in a very good agreement with the quantum mechanically obtained ab initio charges.     

A Quantum Chemical and Electrostatic Study of Alkyl and Substituted Benzenonium Cations and Related Molecules: The Effect of Atomic Charge Distribution on Carbocation Energy and Geometry

Geometries, NMR chemical shifts, atomic charges, and bond orders were calculated at the MP2/6-31G* level of theory for the isopropyl, sec-butyl, tert-butyl, benzenonium, and six methyl- and trifluoromethyl-substituted benzenonium ions. The NPA charges correlate better than the CHELPG, MK, and AIM charges with the experimental and calculated carbon chemical shifts. The electrostatic energies of isomeric ions, calculated by treatment of the NPA charges as point charges, are comparable to their MP2 energy differences. The electrostatic calculations, although classical approximations, provide a qualitative understanding of the coulombic basis of the methyl and trifluoromethyl substituent effects. It is apparent that these species are stabilized by having adjacent, oppositely charged atoms (for example, having the negatively charged carbon of a methyl group bonded to a positive carbon). It is proposed that a methyl group be termed a nucleophilic (rather than electron-donating) substituent and that a trifluoromethyl group be termed an electrophilic substituent. In the benzenonium ions and in toluene, fluoromethylbenzene, difluoromethylbenzene, and benzotrifluoride, the endocyclic angle at the substituent increases with increasing electrophilicity of the substituent. An electrostatic calculation again provides some insight into the coulombic basis of these changes.     

Modeling electrochemical interfaces from ab initio molecular dynamics: water adsorption on metal surfaces at potential of zero charge

The origin of the potential difference between the potential of zero charge of a metal/water interface and the work function of the metal is a recurring issue because it is related to how water interacts with metal surface in the absence of surface charge. Recently ab initio molecular dynamics method has been used to model electrochemical interfaces to study interfacial potential and the structure of interface water. Here, we will first introduce the computational standard hydrogen electrode method, which allows for ab initio determination of electrode potentials that can be directly compared with experiment. Then, we will review the recent progress from ab initio molecular dynamics simulation in understanding the interaction between water and metal and its impact on interfacial potential. Finally, we will give our perspective for future development of ab initio computational electrochemistry.     

Summary of ISO/TC 201 Standard: ISO 29081: 2010, surface chemical analysis—Auger electron spectroscopy—reporting of methods used for charge control and charge correction

This international standard specifies the minimum amount of information required for describing the methods of charge control and charge correction in measurements of Auger electron transitions from insulating specimens by electron‐stimulated AES to be reported with the analytical results. Information is provided in an Annex on methods that have been found useful for charge control prior to or during AES analysis. The Annex also includes a summary table of methods or approaches, ordered by simplicity of approach. A similar international standard has been published for XPS (ISO 19318: 2003(E), Surface chemical analysis—XPS—reporting of methods used for charge control and charge correction. Copyright © 2010 John Wiley & Sons, Ltd.     

Viscometric and conductometric study of polyelectrolytes of low charge density in salt free aqueous solutions

Viscometric and conductometric measurements have been performed on dilute, salt free solutions of poly(vinyl alcohol) (PVA) and poly(vinyl alcohol, vinyl sulphate ester) copolymer salts in order to get information on transition from a neutral to charged macromolecules. With increasing linear charge density from a very low value to a moderate one a non linear dependence of polyelectrolyte effect on copolymer composition was observed. A comparison has shown that there is a close analogy between the expansion of polyanions and swelling of polyelectrolyte networks at comparable linear charge density range. Due to the intra- and inter-molecular mobile ionic bridges a considerable contraction was pointed out by viscometry for barium, magnesium and copper salts. However, the differences in properties of counterions of higher charge number indicates that in addition to the valency, there is a definite chemical effect, too. It has been revealed by the electric conductance measurements that the transition from a neutral to charged macromolecules could be a very complex one calling for a new and more detailed theoretical consideration of polyelectrolyte solutions.     

Synthesis and charge/discharge properties of polyacetylenes carrying 2,2,6,6-tetramethyl-1-piperidinoxy radicals

The 2,2,6,6-tetramethyl-1-piperidinoxy (TEMPO)-containing acetylenic monomers HC[triple bond]CC(6)H(3)-p,m-(CONH-4-TEMPO)(2) (1), HC[triple bond]CC(6)H(3)-p,m-(COO-4-TEMPO)(2) (2), (S,S,S,S)-HC[triple bond]CC(6)H(3)-p,m-[CO-NHCH{COO-(4-TEMPO)}CH(2)COO-(4-TEMPO)](2) (3), (S,S)-HC[triple bond]CC(6)H(4)CO-NHCH{COO-(4-TEMPO)}CH(2)COO-(4-TEMPO) (4), HC[triple bond]CC(6)H(4)-p-OCO-4-TEMPO (5), HC[triple bond]CCH(2)C(CH(3))(CH(2)OCO-4-TEMPO)(2) (6), HC[triple bond]CCH(2)NHCO-4-TEMPO (7), and HC[triple bond]CCH(2)OCO-4-TEMPO (8) were polymerized to afford novel polymers containing the TEMPO radical at high densities. Monomers 1, 3-6, and 8 provided polymers with average molecular weights of 10 000-136 500 in 62-99 % yield in the presence of a rhodium catalyst, whereas monomers 2 and 7 gave insoluble polymers in 100 % yield. The formed polymers were thermally stable up to approximately 274 degrees C according to thermogravimetric analysis (TGA). All the TEMPO-containing polymers demonstrated reversible charge/discharge processes, whose discharge capacities were 21.3-108 A h kg(-1). In particular, the capacity of poly(1)-, poly(4)-, and poly(5)-based cells reached 108, 96.3, and 89.3 A h kg(-1), respectively, which practically coincided with their theoretical values.     

Off‐atomic site charges in some anions,metal cations,and complexes: Significance for electrostatic properties and binding

Electronic structures and properties of several anions, metal cations, and their complexes with neutral molecules were investigated at the HF/6‐31G** and B3LYP/6‐31G** levels of theory. Charges shifted from atomic sites due to atomic orbital hybridization called hybridization displacement charges (HDC) were investigated in detail. It has been found that many components of HDC are associated with each atom of ion that are shifted from the atomic sites, those associated with metal cations being shifted by large distances as found previously in electrically neutral systems. It is shown that atomic orbitals are appreciably rehybridized in going from neutral molecules to anions and cations. Molecular dipole moments and surface molecular electrostatic potentials (MEP) are obtained satisfactorily using HDC for the various types of species mentioned above. In the OH^?? H₂O complex, reversal of direction of shift of an HDC component associated with the hydrogen atom of H₂O involved in hydrogen bonding, indicates that the hydrogen bond between OH^? and H₂O would have some covalent character. Other atomic site‐based point charge models cannot provide such information about the nature of bonding. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem 2007     

Redox-photosensitized reaction of indene using photosensitive surfactant in emulsion: dependence on oil droplet size and surfactant charge

A redox-photosensitized reaction of indene 2 using a photosensitive surfactant 1a in an oil-in-water emulsion proceeded efficiently to give alcohol 3 as a major product and is strongly influenced by the oil droplet size and surfactant charge.