First X-ray structural characterisation of host-guest interactions in tetra-tetrazole macrocycles

The syntheses of tetra-tetrazole macrocycles, containing two 1,3-bis(tetrazole)benzene units linked by a variety of n-alkyl (n=3, 5, 7 or 9 carbon atoms) chain lengths, are described. The crystal structures of two 1,3-bis(tetrazole)benzenes containing pendant bromoalkyl chains (n=3 or 5) are reported. A tetra-tetrazole macrocycle has also been structurally characterised and contains an unexpected ‘host-guest’ interaction through binding of a chloroform solvent molecule. The resulting deviation of the macrocycle from planarity results from a combination of the ‘host-guest’ interaction and strong intermolecular interactions between adjacent tetrazole and phenylene rings.     

Synthesis and characterisation of macrocycles containing both tetrazole and pyridine functionalities

The syntheses of tetra-tetrazole macrocycles containing at least one 2,6-bis(tetrazole)pyridine unit, linked by a variety of n-alkyl (n=3, 5, 7 or 9 carbon atoms) chain lengths, are described. There has been no previous incorporation of the pyridine moiety into a tetra-tetrazolophane macrocycle. The crystal structure of one such tetra-tetrazole macrocycle has also been structurally characterised and revealed a bowl-shaped conformation.     

1‐Phenyl‐5‐(piperidino­methyl)‐1H‐tetrazole

In the mol­ecule of the title 1,5‐disubstituted tetrazole, C₁₃H₁₇N₅, the tetrazole and benzene rings are not coplanar, having a dihedral angle of 42.96 (5)° between them. The piperidine fragment adopts a chair conformation, and there is a non‐classical intramolecular contact between the benzene H atom and the piperidine N atom. Intermolecular C—H⋯π interactions involving the piperidine C—H groups and the benzene rings are responsible for the formation of two‐dimensional networks, extending parallel to the ab plane. These networks are linked together into a three‐dimensional polymeric structure viaπ–π stacking interactions between the tetrazole rings of two adjacent mol­ecules.     

Can a Proton be Encapsulated in Tetraamido/Diamino Quaternized Macrocycles in Aqueous Solution and Electric Field?

The proton‐binding behavior of solvated tetraamido/diamino quaternized macrocyclic compounds with rigid phenyl and flexible phenyl bridges in the absence or presence of an external electric field is investigated by molecular dynamics simulation. The proton can be held through H‐bonding interactions with the two carbonyl oxygen atoms in macrocycles containing rigid (phenyl) and flexible (propyl) bridges. The solute–solvent H‐bonding interactions cause the macrocyclic backbones to twist to different extents, depending on the different bridges. The macrocycle with the rigid phenyl linkages folds into a cuplike shape due to π–π interaction, while the propyl analogue still maintains the ellipsoidal ringlike shape with just a slight distortion. The potential energy required for proton transfer is larger in the phenyl‐containing macrocycle than in the compound with propyl units. When an external electric field with a strength of 2.5 V nm^?1 is exerted along the carbonyl oxygen atoms, a difference in proton encircling is exhibited for macrocycles with rigid and flexible bridges. In contrast to encapsulation of a proton in the propyl analogue, the intermolecular solute–solvent H‐bonding and intramolecular π–π stacking between the two rigid phenyl spacers leads to loss of the proton from the highly distorted cuplike macrocycle with phenyl bridges. The competition between intra‐ and intermolecular interactions governs the behavior of proton encircling in macrocycles.     

Perfluorinated cyclo-tetrakis(phenylene sulfides): synthesis and structure

Perfluoro-cyclo-tetrakis(1,4-phenylene sulfide) has been synthesized by the reaction of tetrafluorobenzene-1,4-dithiol with perfluoro-1,4-bis(phenylthio)benzene. The reaction of tetrafluorobenzene-1,4-dithiol with perfluoro-m-xylene gives a macrocycle with 1,3- and 1,4-arrangement of bridged sulfur atoms.     

Engineering solid-state morphologies in carbazole-ethynylene macrocycles

We present a crystallographic study that systematically investigates the effects of the n-alkyl side-chain length on the crystal packing in shape-persistent macrocycles. The solid-state packing of carbazole-ethynylene-containing macrocycles is sensitive to the alkyl-chain length. In macrocycles containing n-alkyl side chains up to nine carbons in length, face-on aromatic π interactions predominate, while the addition of one carbon leads to a completely different packing arrangement. Macrocycles with C(10) or C(11) chains exhibit a novel packing motif wherein the alkyl chains intercalate between macrocycles, leading in one case to continuous solvent-filled channels. When crystals of the C(10) macrocycle are bathed in solvent, the included molecules exchange with the external solvent, and the alkyl chain disorder changes in response to changes in the guest volume in order to retain crystallinity. Powder X-ray diffraction data indicate that alkyl-macrocycle interactions in the longer chains "emulate" the distances typical of face-to-face π interactions, leading to deceptive indicators of π stacking.     

α,ω-Bis(3,6-dimethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)alkanes and products of their cyclization, pyrimidinophanes: intra- and intermolecular interaction in crystals and in solutions

Reaction of α,ω-bis(3,6-dimethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)alkanes with paraformaldehyde leads to pyrimidinophanes, which contain four 3,6-dimethyluracil fragments, connected to each other by the methylene chains. A comparative study of intra- and intermolecular interactions of “open” and macrocyclic uracil derivatives in the crystal state and in solution was performed. According to the NMR spectroscopy data, there is no self-association of “open” and macrocyclic compounds in chloroform solutions, whereas the X-ray data revealed the intermolecular π-π contacts between the 3,6-dimethyluracil fragments in the crystals of these compounds. Conclusions on the presence of intramolecular interactions in chloroform solutions of α,ω-bis(3,6-dimethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)alkanes and pyrimidinophanes were made based on the UV spectra, which were interpreted in terms of hypo- and hyperchromic effects relatively to the model uracil derivative. These conclusions correlate with the X-ray data: there are no intramolecular π-π contacts between the 3,6-dimethyluracil fragments both in the crystals and in solutions of “open” compounds, positions of these fragments relatively to each other in the molecules of pyrimidinophanes are defined by the lengths of the polymethylene bridges. The intramolecular stacking effect between the opposite uracil rings is observed for the macrocycles with trimethylene and hexamethylene chains, whereas there is no such interactions in pyrimidinophanes with tetramethylene chains. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 119–131, January, 2008.     

Formation of organotinnitrogen bonds : VI. The intermolecular association of 2-(tri-n-butylstannyl)-tetrazoles in solution

The intermolecular association of 2-(tri-n-butylstannyl)tetrazoles in benzene solution has been evaluated by the measurement of the apparent molecular weight. The degree of the association is highly dependent on the steric effect of the 5-substituent of the tetrazoles. Low temperature NMR spectra of CDCl₃ solutions of 2-(tri-n-butylstannyl)-5-phenyltetrazole and -5-(p-nitrophenyl)tetrazole displayed temperature- and concentration-dependencies. As the temperature decreases, the benzene and tetrazole rings become less coplanar. This may be attributed to the closer polymeric association of the 1-nitrogen to tin at low temperature. The intermolecular associated form of 2-(tri-n-butylstannyl)tetrazoles in less polar solvents such as benzene and chloroform is confirmed as a 1,3-structure (A).     

Two Cadmium(II) Coordination Polymers based on Pamoic Acid and Different Polydentate N-donor Ligands: Syntheses,Crystal Structures,and Fluorescence Properties

Two new fluorescent coordination polymers based on pamoic acid and different polydentate N-donor ligands, namely {[Cd(PA)(TPTZ)(H₂O)](DMF)₂}_n ( 1 ) and [Cd(PA)(BIB)]_n ( 2 ) [H₂PA = pamoic acid, TPTZ = 2,4,6-tri(2-pyridyl)-1,3,5-triazine, BIB = 1,4-bis(1-imidazolyl)benzene], were synthesized and characterized. Complex 1 showed a 1D zigzag chain structure with intramolecular hydrogen bonds. The 2D supramolecular structure in 1 was formed through π–π stacking interactions and intermolecular hydrogen bonds. Complex 2 displayed a 2D network structure. Intramolecular hydrogen bonds and π–π stacking interactions were observed in 2 . By studying the fluorescence sensing performance of two coordination polymers, complex 1 exhibited high selectivity for tracking Al³⁺ ion and complex 2 could discriminately detect inorganic or aliphatic amines with high selectivity.     

A novel binucleating macrocyclic ligand with two alcohol pendants

A novel binucleating 24‐membered macrocyclic ligand, 6,20‐bis(2‐hydroxy­ethyl)‐3,6,9,17,20,23‐hex­aza­tri­cyclo­[23.3.1.1^11,15]triaconta‐1(29),11(30),12,14,25,27‐hexaene (L), was synthesized and crystallized as the tetra­hydro­bromide salt, i.e. 6,20‐bis(2‐hydroxy­ethyl)‐6,20‐di­aza‐3,9,17,23‐hexa­azoniatri­cyclo­[23.3.1.1^11,15]­triaconta‐1(29),11(30),­12,14,25,27‐hexaene tetrabromide tetrahydrate, C₂₈H₅₀N₆O₂⁴⁺·­4Br^?·4H₂O. A crystallographic inversion center is located in the macrocyclic cavity and the two hydroxy­ethyl pendants are on opposite sides of the macrocyclic plane. The benzene rings of the macrocycle are parallel to each other and a π–π‐stacking interaction exists between the benzene rings of adjacent macrocycles, which are separated by 3.791 (9) Å. An infinite intermolecular hydrogen‐bond network stabilizes the crystal.     

Toward the self-assembly of metal-organic nanotubes using metal-metal and π-stacking interactions: bis(pyridylethynyl) silver(I) metallo-macrocycles and coordination polymers

Shape-persistent macrocycles and planar organometallic complexes are beginning to show considerable promise as building blocks for the self-assembly of a variety of supramolecular materials including nanofibers, nanowires, and liquid crystals. Here we report the synthesis and characterization of a family of planar di- and tri-silver(I) containing metallo-macrocycles designed to self-assemble into novel metal-organic nanotubes through a combination of π-stacking and metal-metal interactions. The silver(I) complexes have been fully characterized by elemental analysis, high resolution electrospray ionization mass spectrometry (HR-ESI-MS), IR, (1)H and (13)C NMR spectroscopy, and the solution data are consistent with the formation of the metallo-macrocycles. Four of the complexes have been structurally characterized using X-ray crystallography. However, only the di-silver(I) complex formed with 1,3-bis(pyridin-3-ylethynyl)benzene is found to maintain its macrocyclic structure in the solid state. The di-silver(I) shape-persistent macrocycle assembles into a nanoporous chicken-wire like structure, and ClO(4)(-) anions and disordered H(2)O molecules fill the pores. The silver(I) complexes of 2,6-bis(pyridin-3-ylethynyl)pyridine and 1,4-di(3-pyridyl)buta-1,3-diyne ring-open and crystallize as non-porous coordination polymers.     

Phosphorylation of 1,4-bis(hydroxymethyl)benzene with trivalent phosphorus derivatives

Phosphorylation of 1,4-bis(hydroxymethyl)benzene with complete phosphorous acid amides and phenyl phosphorodichloridite is studied. Some phosphorus-containing linear systems, the phosphamacrocycle precursors, are synthesized. The possibility of synthesis of phosphamacrocyclic systems based on 1,4-bis(hydroxymethyl)benzene is considered; it was shown that this compound does not tend to form macrocycles.     

Synthesis and photophysical behavior of thia-aza macrocycles with 9-anthracenylmethyl moiety as fluorescent appendage

1,3-Bis(bromomethyl)-2-methoxy-5-methylbenzene, 1,3-bis(bromomethyl)-2,4,6-trimethylbenzene, 1,3- and 1,4-bis(bromomethyl)benzene undergo nucleophilic substitution with methyl mercaptoacetate to provide respective diesters 6–9. These diesters (6–9) on stirring with bis(3-aminopropyl)amine and diethylenetriamine in methanol–toluene (1:1) mixture undergo intermolecular cyclization to give respective thia-aza macrocycles 10–15. The alkylation of macrocycles 10–13 with 9-anthracenylmethyl chloride gave amine N-(anthracenylmethyl) substituted macrocycles 16–19. The extraction profile of macrocycles 10–15 towards alkali (Li⁺, Na⁺, K⁺), alkaline earth (Mg²⁺, Ca²⁺, Sr²⁺, Ba²⁺), Ag⁺, Tl⁺ and Pb²⁺ picrates shows preferential extraction of Ag⁺ with these macrocycles. The macrocycles 16–19 show fluorescence spectrum typical of anthracene moiety and depending on their structures exhibit 0–80 times increase in fluorescence on addition of transition metal ions. Fluorescent receptors 16, 17, and 19 are capable of functioning as a very efficient multi input OR logic gate.

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Graphical abstract 1,3- and 1,4-Bis(bromomethyl)benzene and its substituted derivatives undergo nucleophilic substitution with methyl mercaptoacetate to provide respective diesters 6–8. These diesters (6–8) on stirring with bis(3-aminopropyl)amine in methanol–toluene (1:1) mixture undergo intermolecular cyclization to give respective thia-aza macrocycles 10–12. The alkylation of macrocycles 10–12 with 9-anthracenylmethyl chloride gave amine N-(anthracenylmethyl) substituted macrocycles 16–18. The macrocycles 16–18 exhibit 0–80 times increase in fluorescence on addition of transition metal ions.

     

Lewis Acid promoted tandem intermolecular Diels-Alder/intramolecular allylation reactions of silyl-substituted 1,3-butadienes leading to multisubstituted 7-norbornenones and related polycyclic compounds

7-Norbornenones of exo,exo-disubstituted patterns were formed highly selectively in good yields from Lewis acid-promoted tandem intermolecular Diels-Alder/intramolecular allylation reactions. The intermolecular Diels-Alder reaction between 1,4-bis(trimethylsilyl)-1,3-butadienes or 1-trimethylsilyl-1,3-butadienes with maleic anhydride in the presence of newly sublimed AlCl3 afforded their corresponding cycloaddition adducts, which underwent AlCl3-mediated intramolecular allylation of the carbonyl group by the in situ generated allylsilane moiety affording 7-norbornenones of exo,exo-disubstituted patterns.     

Hydrogen-bonded aryl amide macrocycles: synthesis, single-crystal structures, and stacking interactions with fullerenes and coronene

Six hydrogen-bonded shape-persistent aryl amide macrocycles have been prepared by using one-step and (for some) step-by-step approaches. From the one-step reactions, 3 + 3, 2 + 2, or even 1 + 1 macrocycles were obtained in modest to good yields. The reaction selectivity was highly dependent on the structures of the precursors. The X-ray structural analysis of two methoxyl-bearing macrocycles revealed intramolecular hydrogen bonding and weak intermolecular stacking interaction; no column-styled stacking structures were observed. The 1H (DOSY) NMR, UV-vis, and fluorescent experiments indicated that the new rigidified macrocycles complex fullerenes or coronene in chloroform through intermolecular pi-stacking interaction. The association constants of the corresponding 1:1 complexes have been determined if the stacking was able to cause important fluorescent quenching of the macrocycles or coronene.     

Protonation and subsequent intramolecular hydrogen bonding as a method to control chain structure and tune luminescence in heteroatomic conjugated polymers

We report the effects of protonation on the structural and spectroscopic properties of 1,4-dimethoxy-2,5-bis(2-pyridyl)benzene (9) and the related AB coploymer poly(2,5-pyridylene-co-1,4-[2,5-bis(2-ethylhexyloxy)]phenylene) (7). X-ray crystallographic analysis of 9, 1,4-dimethoxy-2,5-bis(2-pyridyl)benzene bis(formic acid) complex 10, and 1,4-dimethoxy-2,5-bis(2-pyridinium)benzene bis(tetrafluoroborate salt) (11) establishes that reaction of formic acid with 9 does not form an ionic pyridinium salt in the solid state, rather, the product 10 is a molecular complex with strong hydrogen bonds between each nitrogen atom and the hydroxyl hydrogen in formic acid. In contrast, reaction of 9 with tetrafluoroboric acid leads to the dication salt 11 with significant intramolecular hydrogen bonding (N-H.O-Me) causing planarization of the molecule. The pyridinium and benzene rings in 11 form a dihedral angle of only 3.9 degrees (cf. pyridine-benzene dihedral angles of 35.4 degrees and 31.4 degrees in 9, and 43.8 degrees in 10). Accordingly, there are large red shifts in the optical absorption and emission spectra of 11, compared to 9 and 10. Polymer 7 displays a similar red shift in its absorption and photoluminescence spectra upon treatment with strong acids in neutral solution (e.g. methanesulfonic acid, camphorsulfonic acid, and hydrochloric acid). This is also observed in films of polymer 7 doped with strong acids. Excitation profiles show that emission arises from both protonated and nonprotonated sites in the polymer backbone. The protonation of the pyridine rings in polymer 7, accompanied by intramolecular hydrogen bonding to the oxygen of the adjacent solubilizing alkoxy substituent, provides a novel mechanism for driving the polymer into a near-planar conformation, thereby extending the pi-conjugation, and tuning the absorption and emission profiles. The electroluminescence of a device of configuration ITO/PEDOT/polymer 7/Ca/Al is similarly red-shifted by protonation of the polymer.     

Platinum(II) molecular triangle with a deep intramolecular cavity

Depending on the conditions, the reaction of K 2PtCl 4 with 1,3-bis( N-pyrazolyl)benzene (bpzphH) yields either Pt(bpzph)Cl, [Pt(mu-bpzph)Cl] 3, or a mixture of these products. In the case of the C 3-symmetric trimer, each bpzph (-) ligand is bidentate with the metal bonded to a pyrazolyl group and to the phenyl group at the 6 position; the remaining pyrazolyl group bridges to an adjacent platinum center. The crystal structure confirms that each complex is chiral with an unusually deep (approximately 8 A) intramolecular cavity; enantiomeric pairs of trimers encapsulate the diethyl ether solvate. NMR studies establish that the trimer exhibits excellent thermal and kinetic stability. Substitution of the chloride ligands provides a strategy for elaborating the macrocycle.     

Coordination polymers from silver(I) and bifunctional pyridyl ligands

Coordination polymers and a macrocycle formed from the reactions between flexible bis(2-pyridyl) ligands and AgCF(3)SO(3) are reported. The type of structure formed depends on the choice of ligand and the stoichiometry of the reaction. When 1 equiv of 1,4-bis(pyridin-2-ylmethoxy)benzene (L2), 4,4'-bis(pyridin-2-ylmethoxy)biphenyl (L4), or bis((4-pyridin-2-ylmethoxy)phenyl)methane (L5) is used, 1D chain coordination polymers held together via Ag-N bonds are generated. When a 2:1 ratio of L2 and silver ion is used, a 2D porous network is formed. The reaction between silver ions with a mixture of ligands (L1 and L2 in 1:1 ratio, L1 = 1,4-bis((pyridin-2-yl-methyl)thio)benzene) results in a novel 1D ABAB type coordination copolymer where L1 and L2 act as a bis-bidentate and a bis-monodentate ligand, respectively. The reaction of 1-(pyridin-2-ylmethoxy)-4-((pyridin-2-yl-methyl)thio)benzene (L3) with silver ions in a 1:1 ratio gives a bimetallic macrocycle rather than a polymeric species. Structural analyses of the polymeric compounds suggest that interactions between the aromatic rings play a significant role in stabilizing the polymeric structures.     

24- and 26-membered macrocyclic diorganotin(IV) bis-dithiocarbamate complexes with N,N'-disubstituted 1,3- and 1,4-bis(aminomethyl)benzene and 1,1'-bis(aminomethyl)ferrocene as spacer groups

The potassium bis-dithiocarbamate (bis-dtc) salts of 1,3-bis(benzylaminomethyl)benzene (1,3-Bn-ambdtc), 1,3-bis(iso-butylaminomethyl)benzene (1,3-(i)Bu-ambdtc), 1,4-bis(benzylaminomethyl)benzene (1,4-Bn-ambdtc), and 1,4-bis(iso-butylaminomethyl)benzene (1,4-(i)Bu-ambdtc) were reacted with three different diorganotin dichlorides (R2SnCl2 with R = Me, (n)Bu, and Ph) in 1:1 stoichiometric ratios to give the corresponding diorganotin bis-dithiocarbamates. Additionally, the dimethyltin bis-dithiocarbamate of 1,1'-bis(benzylaminomethyl)ferrocene (1,1'-Bn-amfdtc) was prepared. The resulting complexes have been characterized as far as possible by elemental analysis, FAB(+) mass spectrometry, IR and NMR ((1)H, (13)C, and (119)Sn) spectroscopy, and single-crystal X-ray diffraction, showing that the tin complexes are dinuclear 24- and 26-membered macrocyclic species of composition [{R2Sn(bis-dtc)}2]. As shown by (119)Sn NMR spectroscopy, the tin centers are hexa-coordinated in all cases; however, two different coordination environments are possible, as detected by single-crystal X-ray diffraction. In the dimethyltin derivatives of 1,3-Bn-ambdtc, 1,3-(i)Bu-ambdtc, 1,4-Bn-ambdtc, and 1,1'-Bn-amfdtc and the di-n-butyltin derivative of 1,3-(i)Bu-ambdtc, the metal atoms are embedded in skewed-trapezoidal-bipyramidal coordination polyhedra with asymmetrically coordinating trans-oriented dtc groups. In contrast, in the diphenyltin derivative 1,3-(i)Bu-ambdtc, the metal centers have distorted octahedral coordination with symmetrically coordinating cis-oriented dtc functions. Thus, for the complexes derived from 1,3-Bn/(i)Bu-ambdtc, two different macrocyclic structures were observed. In the dimethyl- and di-n-butyltin derivatives, the bridging bis-dtc ligands adopt U-shaped conformations, while in the case of the diphenyltin derivative, the conformation is L-shaped. Furthermore, two different macrocyclic ring conformations can occur, which differ in the spatial orientation of the substituents attached to the nitrogen atoms (Bn or (i)Bu). The dimethyltin derivatives of 1,4-Bn-ambdtc and 1,1'-Bn-amfdtc have cavities, in which aromatic rings are accommodated in the solid state.     

Reactions of 1,4-bis(tetrazole)benzenes: formation of long chain alkyl halides

The reactions of 1,4-bis[2-(tributylstannyl)tetrazol-5-yl]benzene with α,ω-dibromoalkanes were carried out in order to synthesise pendant alkyl halide derivatives of the parent bis-tetrazole. This led to the formation of several alkyl halide derivatives, substituted variously at N1 or N2 on the tetrazole ring. The crystal structures of 1,4-bis[(2-(4-bromobutyl)tetrazol-5-yl)]benzene (2-N,2-N′), 1,4-bis[(2-(4-bromobutyl)tetrazol-5-yl)]benzene (1-N,2-N′) and 1,4-bis[(2-(8-bromooctyl)tetrazol-5-yl)]benzene (2-N,2-N′) are reported. Further discussion involves the structure of 1,4-bis[2-(6-bromohexyl)-2H-tetrazol-5-yl]benzene (2-N,2-N′) previously reported.