Dispiro[adamantane‐2,2′‐1′,3′,6′,9′,11′,14′‐hexathiacyclohexadecane‐10′,2′′‐adamantane]

The conformational features of the title compound, C₂₈H₄₄S₆, are compared with previously reported analogous macrocycles. The type of substituent affects considerably the conformation of the macrocycle. A ¹H NMR titration of the title compound with AgBF₄ indicated the formation of the 1:1 complex, which was not crystallized.     

Can a Proton be Encapsulated in Tetraamido/Diamino Quaternized Macrocycles in Aqueous Solution and Electric Field?

The proton‐binding behavior of solvated tetraamido/diamino quaternized macrocyclic compounds with rigid phenyl and flexible phenyl bridges in the absence or presence of an external electric field is investigated by molecular dynamics simulation. The proton can be held through H‐bonding interactions with the two carbonyl oxygen atoms in macrocycles containing rigid (phenyl) and flexible (propyl) bridges. The solute–solvent H‐bonding interactions cause the macrocyclic backbones to twist to different extents, depending on the different bridges. The macrocycle with the rigid phenyl linkages folds into a cuplike shape due to π–π interaction, while the propyl analogue still maintains the ellipsoidal ringlike shape with just a slight distortion. The potential energy required for proton transfer is larger in the phenyl‐containing macrocycle than in the compound with propyl units. When an external electric field with a strength of 2.5 V nm^?1 is exerted along the carbonyl oxygen atoms, a difference in proton encircling is exhibited for macrocycles with rigid and flexible bridges. In contrast to encapsulation of a proton in the propyl analogue, the intermolecular solute–solvent H‐bonding and intramolecular π–π stacking between the two rigid phenyl spacers leads to loss of the proton from the highly distorted cuplike macrocycle with phenyl bridges. The competition between intra‐ and intermolecular interactions governs the behavior of proton encircling in macrocycles.     

Synthesis and properties of calixarene analogs incorporating a thiophene unit in the macrocyclic ring

Calixarene analogs containing a thiophene unit in the macrocyclic ring were prepared by a stepwise method. The macrocycles adopt a cone‐like form as the preferred conformation in solution. The induced chemical shift change, nOe experiment, and ¹H relaxation time (T₁) measurement supported the fact that the macrocycle forms a complex with the N‐methylpyridinium salt. In contrast, O‐tetramethylated macrocycles and linear phenol‐formaldehyde tetramer, could not efficiently include the N‐methylpyridinium salt.     

Spectroscopic characterization and molecular structure of 3,14‐dimethyl‐2,6,13,17‐tetraazapentacyclo[16.4.0.12,17.16,13.07,12]tetracosane

Constrained cyclam derivatives have been found to exhibit anti‐HIV effects. The strength of binding to the CXCR4 receptor correlates with anti‐HIV activity. The conformation of the macrocyclic compound is very important for co‐receptor recognition. Therefore, knowledge of the conformation and crystal packing of macrocycles has become important in developing new highly effective anti‐HIV drugs. Structural modifications of N‐functionalized polyaza macrocyclic compounds have been achieved using various methods. A new synthesis affording single crystals of the title tetraazapentacyclo[16.4.0.1^2,17.1^6,13.0^7,12]tetracosane macrocycle, C₂₂H₄₀N₄, is reported. Formaldehyde reacts readily at room temperature with the tetraazatricyclo[16.4.0.0^2,17]docosane precursor to yield a macropolycycle containing two five‐membered rings. Characterization by elemental, spectroscopic and single‐crystal X‐ray diffraction analyses shows that the asymmetric unit contains half of a centrosymmetric molecule. The molecular structure shows a trans conformation for the two methylene bridges owing to molecular symmetry. The crystal structure is stabilized by intramolecular C—H…N hydrogen bonds. NMR and IR spectroscopic properties support the methylene‐bridged macrocyclic structure.     

Syntheses and properties of chiral pentahomothiazacalix[3]arenes

Chiral calixarene analogs incorporating an aminoethanethiol unit such as L-cysteine into their rings were prepared. Conformational analysis of the macrocycles by using ¹H and ¹³C nmr spectroscopy revealed that their preferred conformation was a cone, which was more stable in chloroform than in toluene. The introduction of an aminoethanethiol moiety into the macrocyclic ring caused ring fluctuation, however, the carboxylic acid derivative was a highly rigid structure in the cone form. The ¹H nmr and circular dichroism spectra of the macrocycles showed the existence of chirality of the phenol-formaldehyde unit, which was induced by the chirality of the cysteine moiety.     

Double-helical cyclic peptides: design, synthesis, and crystal structure of figure-eight mirror-image conformers of adamantane-constrained cystine-containing cyclic peptide cyclo (Adm-Cyst)(3)

A large number of macrocycles containing alternating repeats of cystine diOMe(-NH-CH(CO(2)Me)-CH(2)-S-)(2) and either a conformationally rigid aromatic/alicyclic moiety or a flexible polymethylene unit (X) in the cyclic backbone with ring size varying from 13- to 78-membered have been examined by spectral ((1)H NMR, FT-IR, CD) and X-ray crystallography studies for unusual conformational preferences. While (1)H NMR measurements indicated a turnlike conformation for all macrocycles, stabilized by intramolecular NH.CO hydrogen bonding, as also supported by FT-IR spectra in chloroform, convincing proof for beta-turn structures was provided by circular dichroism studies. Single-crystal X-ray studies on 39-membered cyclo (Adm-L-Cyst)(3) revealed a double-helical fold (figure-eight motif) for the macrocycle. Only a right-handed double helix was seen in the macrocycle constructed from L-cystine. The mirror-image macrocycle made up of D-cystine units exhibited a double helix with exactly the opposite screw sense, as expected. The enantiomeric figure-eights were stabilized by two intramolecular NH. CO hydrogen bonds and exhibited identical (1) H NMR and FT-IR spectra. The CD spectra of both isomers had a mirror-image relationship. The present results have clearly brought out the importance of cystine residues in inducing turn conformation that may be an important deciding factor for the adoption of topologically important structures by macrocycles containing multiple S-S linkages.     

Synthesis of macrocyclic ligands incorporating sulfur and furan subunits

Abstract

Polyammonium macrocycles containing sulfur and furan units in the macrocyclic ring have been synthesized and studied for ATPase activity. The synthetic methodology involved using tosyl protection for the amines and the formation of macrocyclic Lactams, followed by reduction using borane in THF. Deprotection of the tosylated forms of the macrocycle was accomplished using sodium in butanol for the furan macrocycles, and HBr in HOAc for the sulfur containing macrocycle. The macrocycles were found to be poor catalysts for ATP hydrolysis compared to other similar polyammonium macrocycles.     

一类含联二萘结构的新型聚芳醚酮类刚性大环及其二聚体的合成与表征

通过一定的分子设计,利用一种全新的双酚单体(4-氯代苯基对苯二酚)和含有联二萘结构的双氟三聚体(BNDIF)经一步法合成环状齐聚物,制得了一类含有氯代苯基侧基和联二萘结构的新型聚芳醚酮类刚性大环;并通过氯苯基的催化偶联反应得到了该类刚性大环的二聚体(一类含有2个联二萘结构的新型结构双环齐聚物).利用MALDI-TOFMS和1HNMR及H-HCOSY分析,证明了目标产物的结构.     

Bis(benzo)triazinethionoaza-14-crown-4 ether and its complex with CoBr<Subscript>2</Subscript>: Synthesis and crystal structures

8,11,14-Trioxa-22,24,25-triazatetracyclo[19.3.1.0^2,7.0^15,20]pentacosa-2,4,6,15(20),16,18-hexaene-23-thione (L) containing a symmetric triazinethione subunit in its macrocycle and its complex with cobalt(II) bromide of the formula [CoL₂Br₂] · 0.5CHCl₃ (I) were obtained and examined by X-ray diffraction, IR and NMR spectroscopy, and mass spectrometry. It was found that the thiourea fragment in compound L is attached to the nitrogen macrocycle through the C(2) and C(19) atoms, thus forming a substantially nonplanar six-membered triazine ring in a slightly distorted sofa conformation. Its mean-square plane is nearly perpendicular to the mean-square plane of the macrocycle (the dihedral angle between them is 83.3°). Structure L is stabilized by two bifurcate endocyclic hydrogen bonds between the N(1) atom of the triazine ring and the O(1) and O(3) atoms. The size of the macrocyclic cavity is 4.07 Å. The coordination polyhedron of the Co atom is a distorted tetrahedron made up of the sulfur atoms of two monodentate terminal molecules L and two bromine atoms.     

Highly substituted 2,3,7,8,12,13,17,18-octaethylporphyrins with meso aryl residues

Highly substituted porphyrin-bearing meso aryl groups are useful compounds for optical applications and for studies on the interrelationship between the substituent pattern, macrocycle conformation and physical properties. They serve as biomimetic models for the function of tetrapyrroles in nature and help to elucidate modulation of cofactor properties through conformational effects. Using a sequence of lithium organic substitution reactions the synthesis of novel free base 5,10-A₂- and 5,10-AB-2,3,7,8,12,13,17,18-octaethylporphyrins bearing donating groups such as -OMe and -NMe₂ on the aryl-substituent was achieved. Larger aromatic residues (1-naphthyl, 9-anthracenyl and 9-phenanthrenyl) could be introduced into the macrocycle system as well, and these systems were used for the preparation of highly substituted porphyrins with a mixed substituent pattern. Using phenanthrenyl derivatives, the complete series of meso phenanthrenyl substituted octaethylporphyrins was successfully synthesized and the palladium complexes were prepared for photophysical investigations. Structural studies clearly showed the influence of individual substituents on the conformation of the tetrapyrrole macrocycle and conformational analyses revealed the variation of the underlying distortion modes depending on the type and arrangement of the meso substituents.     

Analysis of the conformational behavior and stability of the SAP and TSAP isomers of lanthanide(III) NB-DOTA-type chelates

Controlling the water exchange kinetics of macrocyclic Gd(3+) chelates, a key parameter in the design of improved magnetic resonance imaging (MRI) contrast media, may be facilitated by selecting the coordination geometry of the chelate. The water exchange kinetics of the mono- capped twisted square antiprism (TSAP) being much closer to optimal than those of the mono capped square antiprism (SAP) render the TSAP isomer more desirable for high relaxivity applications. Two systems have been developed that allow for selection of the TSAP coordination geometry in 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA)-type Gd(3+) chelates, both based upon the macrocycle nitrobenzyl cyclen. In this paper we report investigations into the stability and formation of these chelates. Particular focus is given to the production of two regioisomeric chelates during the chelation reaction. These regioisomers are distinguished by having the nitrobenzyl substituent either on a corner or on the side of the macrocyclic ring. The origin of these two regioisomers appears to stem from a conformation of the ligand in solution in which it is hypothesized that pendant arms lie both above and below the plane of the macrocycle. The conformational changes that then result during the formation of the intermediate H(2)GdL(+) chelate give rise to differing positions of the nitrobenzyl substituent depending upon from which face of the macrocycle the Ln(3+) approaches the ligand.     

Carbon-13 NMR spectra of chlorophyll a,chlorophyll a′, pyrochlorophyll a and the corresponding pheophytins

The ¹³C NMR spectra of C-10 epimeric chlorophylls a and a′, pheophytins a and a′, pyrochlorophyll a and pyropheophytin a have been recorded and assigned by chemical shift comparison, by long-range selective ¹H decoupling experiments and by the examination of the fully coupled spectra. Various factors influencing the ¹³C chemical shifts of the chlorophyll derivatives, e.g. the coordination of magnesium to the chlorin nucleus, the effect of solvent and the steric strain at the periphery of the macrocycle, have been examined. The ¹³C NMR spectra of chlorophyll a measured in acetone-d₆ and tetrahydrofuran-d₈ (THF) were compared, and remarkable solvent effects on the ¹³C chemical shifts were observed. These effects were interpreted mostly in terms of specific chlorophyll-solvent interactions. Different electron donor and steric properties of acetone and THF were considered to cause conformational alterations in the macrocycle, induced by the ligation of the solvent molecule(s) to the axial position(s) of the central magnesium atom of chlorophyll a. These results show that ¹³C NMR spectroscopy is a method of high information value for investigations of the unique electron donor acceptor (EDA) properties of the chlorophylls. The structural differences between the C-10 epimeric chlorophylls and pheophytins were examined in terms of the substituent chemical shift (SCS) parameters for the C-10 methoxycarbonyl group. The analysis showed that the change from the (10R) to the 10(S) configuration induces conformational alterations in the whole macrocycle which are, however, most prominent in rings IV and V. Owing to the increased steric interaction (repulsion) between the bulky substituents at C-7 and C-10, the peripheral strain is larger in the (10S) form, and is relieved by more pronounced deviations of rings IV and V from the macrocyclic plane compared with the (10R) form. The examination of the SCS parameters also showed that the peripheral steric strain is dissipated to a larger extent over the entire macrocycle in the Mg-free derivatives. These results confirm the previous conclusions based on ¹H NMR and CD data. The possible function of chlorophyll a′ in photosynthesis is briefly discussed.     

Nitro derivatives of <Emphasis Type="Italic">N</Emphasis>-alkylbenzoaza-15-crown-5: synthesis,structures, and complexation with metal and ammonium cations

A number of N-alkylnitrobenzoaza-15-crown-5 with the macrocycle N atom conjugated with the benzene ring were obtained. The structural and complexing properties of these compounds were compared with those of model nitrobenzo- and N-(4-nitrophenyl)aza-15-crown-5 using X-ray diffraction, ¹H NMR spectroscopy, and DFT calculations. The macrocyclic N atom of benzoazacrown ethers are characterized by a considerable contribution of the sp3-hybridized state and a pronounced pyramidal geometry; the crownlike conformation of the macrocycle is preorganized for cation binding, which facilitates complexation. The stability constants of the complexes of crown ethers with the NH₄ ⁺, EtNH₃ ⁺, Na⁺, K⁺, Ca²⁺, and Ba²⁺ ions were determined by 1H NMR titration in MeCN-d₃. The most stable complexes were obtained with alkaline-earth metal cations, which is due to the higher charge density at these cations. The characteristics of the complexing ability of N-alkylnitrobenzoaza-15-crown-5 toward alkaline earth metal cations are comparable with analogous characteristics of nitrobenzo-15-crown-5 and are much better than those of N-(4-nitrophenyl)aza-15-crown-5.     

Anion binding versus intramolecular hydrogen bonding in neutral macrocyclic amides

Although amide groups are important hydrogen-bond donors in natural and synthetic anion receptors, studies on structure-affinity relationships of amide-based macrocyclic receptors are still very limited. Therefore, we synthesized a series of macrocyclic tetraamides 5-8 derived from 1,3-benzenedicarboxylic (isophthalic) acid and aliphatic alpha,omega-diamines of different lengths. (1)H NMR titrations in DMSO solution show that the anion affinity of these receptors decreases with increasing size of the macrocycle irrespective of the anion, and this suggests a minor role of geometric complementarity. Comparison with their previously studied pyridine congeners reveals that the isophthalic acid based macrocycles are less potent, in contrast to what was found for simple model diamides. Combined theoretical and experimental structural studies were carried out to determine the reasons behind this behaviour. The results show that the unexpectedly low anion binding ability of the isophthalic acid-based receptors is due to the self-complementary nature of the isophthalic bis-amide fragments: when two such moieties are present within a sufficiently flexible macrocycle, they adopt syn-anti conformations and bind each other by two strong intramolecular hydrogen bonds that close the macrocyclic cavity. Nevertheless, anion binding is able to break these hydrogen bonds and switch a macrocycle into a convergent all-syn conformation. Despite the ill-preorganized conformation, 20-membered receptor 6 is better than either its open-chain analogue (macrocyclic effect) and/or its isomer having differently placed carbonyl groups. The crystal structures of four anion complexes of the macrocyclic receptors are reported. X-ray studies and solution NMR data confirmed the inclusive nature of the complexes and pointed to strong involvement of aromatic CH hydrogen atoms in anion binding.     

Strain‐Induced Reactivity in the Dynamic Covalent Chemistry of Macrocyclic Imines

The displacement of molecular structures from their thermodynamically most stable state by imposition of various types of electronic and conformational constraints generates highly strained entities that tend to release the accumulated strain energy by undergoing either structural changes or chemical reactions. The latter case amounts to strain‐induced reactivity (SIR) that may enforce specific chemical transformations. A particular case concerns dynamic covalent chemistry which may present SIR, whereby reversible reactions are activated by coupling to a high‐energy state. We herewith describe such a dynamic covalent chemical (DCC) system involving the reversible imine formation reaction. It is based on the formation of strained macrocyclic bis‐imine metal complexes in which the macrocyclic ligand is in a high energy form enforced by the coordination of the metal cation. Subsequent demetallation generates a highly strained free macrocycle that releases its accumulated strain energy by hydrolysis and reassembly into a resting state. Specifically, the metal‐templated condensation of a dialdehyde with a linear diamine leads to a bis‐imine [1+1]‐macrocyclic complex in which the macrocyclic ligand is in a coordination‐enforced strained conformation. Removal of the metal cation by a competing ligand yields a highly reactive [1+1]‐macrocycle, which then undergoes hydrolysis to transient non‐cyclic aminoaldehyde species, which then recondense to a strain‐free [2+2]‐macrocyclic resting state. The process can be monitored by ¹H NMR spectroscopy. Energy differences between different conformational states have been evaluated by Hartree–Fock (HF) computations. One may note that the stabilisation of high‐energy molecular forms by metal ion coordination followed by removal of the latter, offers a general procedure for producing out‐of‐equilibrium molecular states, the fate of which may then be examined, in particular when coupled to dynamic covalent chemical processes.     

Multiple Stimuli-Responsive Conformational Exchanges of Biphen[3]arene Macrocycle

Conformational exchanges of synthetic macrocyclic acceptors are rather fast, which is rarely studied in the absence of guests. Here, we report multiple stimuli-responsive conformational exchanges between two preexisting conformations of 2,2′,4,4′-tetramethoxyl biphen[3]arene (MeBP3) macrocycle. Structures of these two conformations are both observed in solid state, and characterized by ¹H NMR, ¹³C NMR and 2D NMR in solution. In particular, conformational exchanges can respond to solvents, temperatures, guest binding and acid/base addition. The current system may have a role to play in the construction of molecular switches and other stimuli-responsive systems.     

Bis- and tris-(methylphosphonic) acid derivatives of a 14-membered tetraazamacrocycle containing pyridine: synthesis, protonation and complexation studies

Two N-methylphosphonic acid derivatives of a 14-membered tetraazamacrocycle containing pyridine have been synthesized, H(4)L(1) and H(6)L(2). The protonation constants of these compounds and the stability constants of complexes of both ligands with Ni(2+), Cu(2+) and Zn(2+) were determined by potentiometric methods at 298 K and ionic strength 0.10 mol dm(-3) in NMe(4)NO(3). The high overall basicity of both compounds is ascribed to the presence of the phosphonate arms. (1)H and (31)P NMR spectroscopic titrations were performed to elucidate the sequence of protonation, which were complemented by conformational analysis studies. The complexes of these ligands have stability constants of the order of or higher than those formed with ligands having the same macrocyclic backbone but acetate arms. At pH = 7 the highest pM values were found for solutions containing the compound with three acetate groups, followed immediately by those of H(6)L(2), however, as expected, the increasing pH favours the complexes of ligands containing phosphonate groups. The single-crystal structure of Na(2)[Cu(HL(1))]NO(3)x8H(2)O has shown that the coordination geometry around the copper atom is a distorted square pyramid. Three nitrogen atoms of the macrocyclic backbone and one oxygen atom from one methylphosphonate arm define the basal plane, and the apical coordination is accomplished via the nitrogen atom trans to the pyridine ring of the macrocycle. To achieve this geometric arrangement, the macrocycle adopts a folded conformation. This structure seems consistent with Uv-vis-NIR spectroscopy for the Ni(2+) and the Cu(2+) complexes and with the EPR for the latter.     

Synthesis and conformational study of 1,3,2-oxazaphosphorino[4, 3-a]isoquinolines: a new ring system

A set of 1,3,2-oxazaphosphorino[4,3-a]isoquinolines 6a,b-9a,b, a new ring system, was synthesized, and their stereochemical and conformational analyses were performed by (1)H, (13)C, and (31)P NMR methods. X-ray measurements were also carried out to confirm the stereochemical assignments and conformational results obtained by means of NMR. Intermediate coupling constants (3)J(P,H) were found for compounds 7 and 9; these do not relate to equilibria between previously reported conformers, but are indicative of new distorted conformational states in solution. The connecting isoquinoline and the steric interaction between the aromatic moiety and the Me-1 substituent can block the oxazaphosphorinane ring. The conformational behavior of compounds 6 and 8 was characterized by the usual chair-twist equilibrium.     

Effects of Axle‐Core,Macrocycle, and Side‐Station Structures on the Threading and Hydrolysis Processes of Imine‐Bridged Rotaxanes

Imine‐bridged rotaxanes are a new type of rotaxane in which the axle and macrocyclic ring are connected by imine bonds. We have previously reported that in imine‐bridged rotaxane 5 , the shuttling motion of the macrocycle could be controlled by changing the temperature. In this study, we investigated how the axle and macrocycle structures affect the construction of the imine‐bridged rotaxane as well as the dynamic equilibrium between imine‐bridged rotaxane 5 and [2]rotaxane 7 by using various combinations of axles ( 1 A , B ), macrocycles ( 2 a – e ), and side‐stations (XYL and TEG). In the threading process, the flexibility of the macrocycle and the substituent groups at the para position of the aniline moieties affect the preparation of the threaded imines. The size of the imine‐bridging station and the macrocyclic tether affects the hydrolysis of the imine bonds under acidic conditions.     

Solution dynamics and stability of lanthanide(III) (S)-2-(p-nitrobenzyl)DOTA complexes

Addition of a benzyl substituent to the macrocyclic ring of DOTA has a substantial impact on the conformational ring flipping motion of the macrocycle in the resulting LnDOTA complexes. The p-NO2-benzyl substituent in the Ln(p-NO2-Bn-DOTA)- complexes lies in an equatorial position and effectively "locks" the conformation of the ring into the deltadeltadeltadelta configuration. The presence of the p-NO2-benzyl group also increases the population of the square antiprismatic (SAP) coordination isomer for all Ln(p-NO2-Bn-DOTA)- complexes relative to that seen for the respective LnDOTA- complexes. Despite this increase in SAP isomer population, the rate of water exchange in these complexes remains comparatively fast. The kinetic and thermodynamic stabilities of the Ln(p-NO2-Bn-DOTA)- complexes are also slightly lower than the corresponding LnDOTA- complexes but appear to be sufficiently high for in vivo use.