水溶性六元瓜环衍生物与1,ω-亚烷基吡啶主客体配合物的^1HNMR及晶体结构

利用^1HNMR技术以及单晶X衍射技术考察对称四甲基取代六元瓜环（TMeQ[6]）与几种1,ω-亚烷基吡啶阳离子（ω=2,4,6,8,10）客体的相互作用．在这些包结配合物中,TMeQ[6]的端口效应以及空腔效应同时存在,其主客体作用模式随着客体亚烷基碳链长短不一而各不相同．对于客体1,2-二乙基吡啶（Edpy）,TMeQ[6]包结Edpy的带正电荷的吡啶环部分,形成一不对称的包结配合物;对于客体1,4-二丁基吡啶（Bdpy）,TMeQ[6]选择性包结Bdpy的吡啶环部分或烷基部分存在竞争作用和快速交换;而具有较长碳链的客体1,6-二己基吡啶（Hdpy）和1,8-二丁庚基吡啶（Odpy）与TMeQ[6]通过空腔的疏水作用以及外部的离子-偶极作用形成稳定的类轮烷包结配合物;客体1,10-二癸基吡啶（Ddpy）的两个吡啶环分别被两个TMeQ[6]包结形成哑铃型的包结配合物．     

Host-guest complexes of a water soluble cucurbit[6]uril derivative with some dications of 1,ω-alkyldipyridines: <Superscript>1</Superscript>H NMR and X-ray structures

Interactions between a symmetrical tetramethyl-substituted cucurbit[6]uril (host: TMeQ[6]) and 1,ω-alkylenedipyridine (ω = 2, 4, 6, 8, 10) dicationic guests were investigated using ¹H NMR spectroscopy and single crystal X-ray crystallography. In these inclusion complexes, combined cavity and portal binding in TMeQ[6] were observed, and the length of the bridged alkylene was found to play an important role not only in balancing the overall hydrophilic/hydrophobic interaction between the host and the guest, but also in defining the structure of the resulting inclusion complexes. For the guest 1,2-ethylenedipyridine (Edpy), TMeQ[6] includes a positively charged pyridine ring of Edpy to form an unsymmetrical inclusion complex; for the guest 1,4-butylenedipyridine (Bdpy), TMeQ[6] includes a positively charged pyridine ring of Bdpy, but the different competitive interactions in and between the related inclusion complexes could lead to a fast exchange between the hosts and guests. For the guests with longer bridge chains, such as 1,6-hexamethylenedipyridine (Hdpy) or 1,8-octylenedipyridine (Odpy), a stable pseudorotaxane inclusion complex is formed by combining the hydrophobic cavity and the outer portal dipole-ion interactions. However, for 1,10-decatylenedipyridine (Ddpy), the two TMeQ[6] host molecules include the two end pyridine rings of Ddpy and form a dumbbell inclusion complex. Supported by the National Natural Science Foundation of China (Grant Nos. 20662003 & 20767001), the International Collaborative Project of Guizhou Province (Grant No. 2007400108), the Science Technology Fund of Guizhou Province (Grant No. J-2008-2012) and the Natural Science Youth Foundation of Guizhou University (Grant No. 2007-005)     

Guest binding and orientation within open nanoscale hosts

The synthesis of three different nanoscale molecular hosts is reported. These cavitands each possess a highly preorganized cavity with an open portal (nearly 1 nm wide), by which guests can enter and egress the cavity. Additionally, these hosts are deep-functionalized with a crown of weakly acidic benzal C-H groups which can form a variety of noncovalent interactions with guest molecules residing within the cavity. Thirty-one guests were examined for their propensity to form complexes with the hosts. Guests that possess halogen atoms were the strongest binders, suggesting the formation of polydentate C-H triplebond X-R hydrogen bonds with the deep crown of benzal hydrogens. Exchange rates between the free and bound states were noted to be dependent on the size of the guest and the solvent used to study complexation. In general, stronger binding and slower exchange were noted for complexations carried out in DMSO with highly complementary guests. The orientation of each guest within the cavity was determined using either EXSY NMR spectroscopy or (1)H NMR shift data. Cumulatively these results showed that the principal factors directing orientation were interactions with the benzal groups and the type of solvent. Van't Hoff analyses of selected complexations were also carried out. As well as revealing that all complexations were entropically unfavorable, these experiments provided support for guest orientation determinations, and gave an estimation that the formation of a C-H triplebond I-R hydrogen bond releases between 1 and 1.5 kcal mol(-1).     

Hydrogen bonding of excited states in supramolecular host-guest inclusion complexes

Host-guest inclusion complexes represent an important type of supramolecular structure, one which finds widespread applications in diverse areas including separations science, the food industry, molecular sensors and optical devices. There are several driving forces for the formation of such inclusion complexes in solution; one of the most important is hydrogen bonding between the guest and host molecules. The nature or strength of the hydrogen bonding may change upon electronic excitation of the guest, for example during fluorescence studies or when the inclusion complex is used as an optical sensor. In this Perspective article, the impact of hydrogen bonding between excited state guests and their hosts is examined in detail, in terms of the impact on the formation and stability of such excited state complexes, the effects on guest fluorescence, changes in the stability of ground state guest complexes upon electronic excitation, the application of inclusion complexes as fluorescent sensors and materials, and the use of fluorescence spectroscopy for their study.     

Molecular dynamics simulation study of the structural features and inclusion capacities of cucurbit[6]uril derivatives in aqueous solutions

Molecular dynamics (MD) simulations were performed for cucurbit[6]uril (CB6) methyl and cyclohexyl derivatives in aqueous solutions. Furthermore, MD simulations have been conducted to study the inclusion complexes between each CB6 derivative with α,ω-pentane diammonium ion (NH₃⁺(CH₂)₅NH₃⁺) to estimate the binding free energies, the complex geometries and the intermolecular forces responsible for complex formation. Results show a complete inclusion of the guest molecule in the cavity of the host for all complexes. Results also indicate that the guest dynamics inside the cavity of the substituted host is similar to that for the unsubstituted host. This demonstrates that the molecular recognition of the host is not affected by the alkyl substitution at the equator. Also, there is an insignificant conformational change of the macrocyclic structure upon inclusion of the guest. Molecular mechanics/Poisson Boltzmann surface area method was used to estimate the binding free energy of each complex. Results indicate that host–guest electrostatic interactions make the largest contribution to the complex binding free energy. Moreover, van der Waals interactions add significantly to the complex stability. The guest molecules show more or less similar binding free energies with the substituted CB6 that exhibits slightly more negative values than unsubstituted CB6 which is proved also by umbrella sampling.     

核磁共振方法研究瓜环[n](n=7,8)与枸橼酸西地那非的相互作用

利用1H NMR技术、电喷雾质谱、红外光谱以及紫外吸收光谱法等手段研究了瓜环[n](n=7,8)与枸橼酸西地那非的相互作用。结果表明:枸橼酸西地那非与两种瓜环都形成了1∶1的包结配合物,但是其配合物的作用模式随瓜环的大小而不同。通过计算得出瓜环[n](n=7,8)与枸橼酸西地那非的包结常数分别为958和1530 L/mol,说明瓜环对枸橼酸西地那非具有潜在的缓释作用。     

The formation of cucurbit[n]uril (n = 6, 7) complexes with amino compounds in aqueous formic acid studied by capillary electrophoresis

For analytes involved in dynamic equilibrium processes, capillary electrophoresis is a powerful method of determining binding constants. In this work, the complex formation between cucurbit[n]uril (CB[n] n = 6, 7) and some amino compounds was studied by capillary electrophoresis in aqueous formic acid (65% v/v). Four groups of positional and structural isomers (o, m, p-methylanilines; m, p-nitroanilines; benzidine and o-tolidine; alpha, beta-naphthylamines and 1,5-diaminonaphthalene) were selected as model compounds for study of their host-guest inclusion complexation. The interactions between CB[n] (n = 6, 7) and the model compounds were also investigated using a molecular modeling method. The results indicate that the interactions of the compounds with CB[n] (n = 6, 7) are strongly affected by the position of the substituent(s) on the aromatic ring and the ion-dipole interaction between guest molecule and CB. Furthermore, the type and the concentration of CBs on the separation and migration behavior of the amino compounds were also studied.     

Macrocyclic vs. dendrimeric effect. A DFT study

Macrocycles up to 15 members with different heteroatoms (N, O, and S) and dendrimeric functionalized branches were assembled, resulting in unique "collective" supramolecular hosts with several active sites for transition metal ions complexation. The nature of the interactions between these kinds of systems and metal ions of the first transition series (Fe, Ni, Cu, Zn) was evaluated by calculations of the binding energies at the B3LYP/LACVP* level of theory, resulting in a preference of metal ions for macrocyclic cavity in terms of complexation; however, there is a favorable contribution in energy due to the cooperative effect of dendrimeric branches (DBs) in the inclusion process by means of long-range interactions between metal ions and the heteroatoms present in DBs. According to calculated binding energies, even when the complexation in the middle of DBs appears as a less favored situation, still competes with the complexation occurred in several known macrocycles traditionally used in the formation of inclusion complexes. The capability of macrocycles as host entities is related to some criteria like: (1) the compatibility in orbital symmetry between host and guest molecules; (2) the cavity dimensions and the negative charge inside; and (3) the hardness-softness affinity between host and guest molecules. When DBs are included in host systems, their flexibility seems to be very important, in addition to localized negative charge, which permits the occurrence of long-range interactions.     

Molecular electrostatic potentials and hydrogen bonding in alpha-, beta-, and gamma-cyclodextrins

Cyclodextrins (CDs) are cyclic oligomers of glucose having the toroid of sugars elaborating a central cavity of varying size depending on the number of glucoses. The central hydrophobic cavity of CD shows a binding affinity toward different guest molecules, which include small substituted benzenes to long chain surfactant molecules leading to a variety of inclusion complexes when the size and shape complementarity of host and guest are compatible. Further, interaction of guest molecules with the outer surface of alpha-CD has also been observed. Primarily it is the electrostatic interactions that essentially constitute a driving force for the formation of inclusion complexes. To gain insights for these interactions, the electronic structure and the molecular electrostatic potentials in alpha-, beta-, and gamma-CDs are derived using the hybrid density functional theory employing the three-parameter exchange correlation functional due to Becke, Lee, Yang, and Parr (B3LYP). The present work demonstrates how the topography of the molecular electrostatic potential (MESP) provides a measure of the cavity dimensions and understanding of the hydrogen-bonded interactions involving primary and secondary hydroxyl groups. In alpha-CD, hydrogen-bonded interactions between primary -OH groups engender a "cone-like" structure, while in beta- or gamma-CD the interactions from the primary -OH with ether oxygen in glucose ring facilitates a "barrel-like" structure. Further, the strength of hydrogen-bonded interactions of primary -OH groups follows the rank order alpha-CD > beta-CD > gamma-CD, while the secondary hydrogen-bonded interactions exhibit a reverse trend. Thus weak hydrogen-bonded interactions prevalent in gamma-CD manifest in shallow MESP minima near hydroxyl oxygens compared to those in alpha- or beta-CD. Furthermore, electrostatic potential topography reveals that the guest molecule tends to penetrate inside the cavity forming the inclusion complex in beta- or gamma-CD.     

Study of the interaction between progesterone and beta-cyclodextrin by electrochemical techniques and steered molecular dynamics

The interaction of progesterone with beta-cyclodextrin (beta-CD) was studied by differential pulse polarography. The aim of the present work was to study the effect of beta-CD on the electrochemical behavior of progesterone in aqueous solution and also to analyze the molecular interactions involved in formation of the inclusion complex. The complex with stoichiometry of 1:1 was thermodynamically characterized. In addition, steered molecular dynamics (SMD) was used to investigate the energetic properties of formation of the inclusion complex along four different pathways (reaction coordinates), considering two possible orientations. From multiple trajectories along these pathways, the potentials of mean force for formation of the beta-CD progesterone inclusion complex were calculated. The energy analysis was in good agreement with the experimental results. In the beta-CD progesterone inclusion complex, a large portion of the steroid skeleton is included in the beta-CD cavity. The lowest energy was found when the D-ring of the guest molecule is located near the secondary hydroxyls of the beta-CD cavity. In the most probable orientation, one intermolecular hydrogen bond is formed between the O of the C-20 keto group of the progesterone and a secondary hydroxyl of the beta-CD.     

葫[n]环联脲(n=5,6,7,8)与两种重氮氟硼酸盐的包合作用研究

用核磁共振氢谱和紫外-可见光谱滴定法考察了葫[n]环联脲(Cucurbit[n]uril,n=5,6,7,8)与对甲苯重氮氟硼酸盐和4,4′-联苯二重氮氟硼酸盐的配位情况,并用曲线拟合求得形成的包结配合物的稳定常数.结果表明,不同空腔的葫[n]环联脲对不同尺寸的重氮氟硼酸盐具有很显著的选择性包结作用.在相同条件下,与葫[6]环联脲相比,葫[7]环联脲更易于容纳苯环.同时,随着酸性的增强,葫[n]环联脲上的脲羰基质子化程度加大,使得其配位能力有所减弱.     

Crown ether-based cryptand/tropylium cation inclusion complexes

Host–guest complexation between crown ether-based cryptand hosts and a carbonium ion, tropylium hexafluorophosphate was studied. ¹H NMR, NOESY NMR, and electrospray ionization mass spectrometry were employed to characterize these inclusion complexes. The contrast tests of ¹H NMR and association constants indicated that cryptands are much better hosts for tropylium hexafluorophosphate than the corresponding simple crown ethers. C–H?O hydrogen bonding, face-to-face π-stacking interactions, and charge-transfer interactions are thought to be the main driving forces for the formation of these host–guest complexes. These multiple non-covalent interactions may jointly contribute to the complex formation and considerably reinforce the complex stability. Moreover, the complexation between dibenzo-24-crown-8-based cryptand 4 and tropylium hexafluorophosphate 7 can be reversibly controlled by adding KPF₆ and then DB18C6 in 1:1 acetonitrile/chloroform, providing a new cation-responsive host–guest recognition motif for supramolecular chemistry.     

Hybrid host-guest complexes: directing the supramolecular structure through secondary host-guest interactions

A set of four hybrid host-guest complexes based on the inorganic crown ether analogue [H12W36O120]12- ({W36}) have been isolated and characterised. The cluster anion features a central rigid binding site made up of six terminal oxygen ligands and this motif allows the selective binding of a range of alkali and alkali-earth-metal cations. Here, the binding site was utilised to functionalise the metal oxide-based cavity by complexing a range of protonated primary amines within the recognition site. As a result, a set of four hybrid organic-inorganic host-guest complexes were obtained whereby the interactions are highly directed specifically within this cavity. The guest cations in these molecular assemblies range from the aromatic 2-phenethylamine (1) and 4-phenylbutylamine (2) to the bifunctional aromatic p-xylylene diamine (3) and the aliphatic, bifunctional 1,6-diaminohexane (4). Compounds 1-4 were structurally characterised by single-crystal X-ray diffraction, elemental analysis, flame atomic absorption spectroscopy, FTIR and bond valence sum calculations. This comparative study focuses on the supramolecular effects of the amine guest cations and investigates their structure-directing effects on the framework arrangement arising by locking the protonated amines within the cavity of the {W36} cluster. It was shown that parts of the organic guest cation protrude from the central binding cavity and the nature of this protruding organic "tail" directs the solid-state arrangement of compounds 1-4. Guest cations with a hydrophobic phenyl tail result in an antiparallel assembly of {W36} complexes arranged in a series of pillared layers. As a consequence, no direct supramolecular interactions between {W36} clusters are observed. In contrast, bifunctional guest cations with a secondary amino binding site act as molecular connectors and directly link two cluster units thus locking the supramolecular assembly in a tilted arrangement. This direct linking of {W36} anions results in the formation of an infinite supramolecular scaffold.     

瓜环[n](n=6～8)与盐酸丁咯地尔的相互作用

利用1HNMR技术、电喷雾质谱、红外光谱及紫外吸收光谱等手段研究了瓜环[n](n=6～8)与盐酸丁咯地尔的相互作用.实验结果表明,盐酸丁咯地尔与3种瓜环具有不同的相互作用,主-客体配合物的作用模式随着瓜环大小的不同而各不相同.其中,瓜环[6]与盐酸丁咯地尔的相互作用非常弱,而瓜环[7]和瓜环[8]则都将盐酸丁咯地尔分子中的吡咯环及其相邻的2个碳全部包结进去,形成了包结比为1:1的对称包结配合物.通过紫外吸收光谱法计算得到瓜环[7]和瓜环[8]与盐酸丁咯地尔分子的包结常数在102～103L/mol范围内,说明瓜环对盐酸丁咯地尔具有潜在的药物缓释作用.     

Manifesting Subtle Differences of Neutral Hydrophilic Guest Isomers in a Molecular Container by Phase Transfer

Achieving strong host–guest interactions between synthetic hosts and hydrophilic guests in solution is challenging because solvation effects overwhelm other effects. To resolve this issue, we transferred complexes of cucurbit[7]uril (CB[7]) and monosaccharides to the gas phase and report here their intrinsic host–guest chemistry in the absence of solvation effects. It was observed that effective host–guest interactions in the gas phase mediated by ammonium cations allow the differentiation of the monosaccharide isomers in complex with CB[7] upon vibrational excitation. The potential of the unique observation was extended to a quantitative supramolecular analytical method for the monosaccharide guests. The combination of host–guest chemistry and phase transfer presented in this study is an effective approach to overcome current limitations in supramolecular chemistry.     

Deciphering Noncovalent Interactions Accompanying 7,7,8,8‐Tetracyanoquinodimethane Encapsulation within Biphene[n]arenes: Nucleus‐Independent Chemical Shifts Approach

Binding of novel biphene[n]arene hosts to antiaromatic 7,7,8,8‐tetracyanoquinodimethane (TCNQ) are investigated by DFT. Biphene[4]arene favors the inclusion complex through noncovalent interactions, such as hydrogen bonding, π–π stacking, C?H???π, and C?H???H?C dihydrogen bonding. Donor–acceptor complexation renders aromatic character to the guest through charge transfer. The formation of TCNQ anionic radicals through supramolecular π stacking significantly influences its chemical and photophysical behavior. Electron density reorganization consequent to encapsulation of TCNQ reflects in the shift of characteristic vibrations in the IR spectra. The accompanying aromaticities arising from the induced ring currents are analyzed by employing nucleus‐independent chemical shifts based profiles.     

Hydrolysis of glutaric anhydride to glutaric acid in the presence of β-cyclodextrin. Crystallographic and NMR study

Crystallization of glutaric anhydride in the presence of β-cyclodextrin (βCD) from aqueous solution resulted in crystals of the glutaric acid/βCD inclusion complex. The result was verified by NMR spectroscopic experiments, which moreover showed that βCD does not protect glutaric anhydride from hydrolysis. The structure determination by X-ray crystallography revealed a host:guest ratio of 1:1 and crystal packing identical to that of natural βCD, i.e., herring bone packing, as is common for guest molecules of small size. Glutaric acid has partial occupancy in the complex and it is disordered in three positions and conformations inside the cavity. All three conformations are stabilised by: (a) Interactions among its carboxyl groups and the host’s primary side hydroxyls pointing towards the cavity, thus justifying the conformations of the latter and (b) by two water molecules located on either side of the cavity, as well as hydroxyl groups of neighbouring hosts. In all conformations the guest is not extended, oxygen atoms between the two carboxyl groups being within H-bond distance.     

Recognition of N‐Alkyl and N‐Aryl Acetamides by N‐Alkyl Ammonium Resorcinarene Chlorides

N‐Alkyl ammonium resorcinarene chlorides are stabilized by an intricate array of intra‐ and intermolecular hydrogen bonds that leads to cavitand‐like structures. Depending on the upper‐rim substituents, self‐inclusion was observed in solution and in the solid state. The self‐inclusion can be disrupted at higher temperatures, whereas in the presence of small guests the self‐included dimers spontaneously reorganize to 1:1 host–guest complexes. These host compounds show an interesting ability to bind a series of N‐alkyl acetamide guests through intermolecular hydrogen bonds involving the carbonyl oxygen (C?O) atoms and the amide (NH) groups of the guests, the chloride anions (Cl^?) and ammonium (NH₂⁺) cations of the hosts, and also through CH ??? π interactions between the hosts and guests. The self‐included and host–guest complexes were studied by single‐crystal X‐ray diffraction, NMR titration, and mass spectrometry.     

Cavity diameter and height of cyclodextrins and cucurbit[n]urils from the molecular electrostatic potential topography

Understanding the interactions of cyclodextrins (CD) and cucurbit[n]uril (CB[n]) hosts with a variety of guest molecules following their encapsulation within the cavity of these macrocycles have become increasingly important in the recent years. The electronic charge distribution and the cavity dimension are some of the key factors those govern their interactions with cations or neutral guests. In the present work the molecular electrostatic potential (MESP) topography has been utilized to obtain the ‘effective’ cavity diameter and height of CB[n] (n = 6–8) homologues and 8 conformers each of α-, β- and γ-CD. It has been shown that the shape of CD cavity be it cone- or barrel-like stems from the hydrogen bonding patterns within primary hydroxyl groups. The width of CB[7] is comparable to the β-CD conformer that possesses either O₆H–O₅′ or intraglucose O₆H–O₅ interactions. The cavity diameters of α- and γ-CD are predicted to be respectively, 1.0 and 1.5 Å larger than CB[6] and CB[8] hosts. MESP topography reveals that the cavities of CB[n] are less hydrophilic with largely hydrophilic portals as compared to CD hosts. Cremer–Pople puckering parameters were derived for all the CD conformers and CB[n]. It has been demonstrated that the clockwise and anticlockwise hydrogen bonding patterns in the lower as well as upper rims of different CD conformers are less distorted and exhibit a little deviation from the °C₃ chair conformation of α-d-glucopyranose constituting monomeric unit of CD.