Gas-phase chemistry of the methyl carbamate radical cation,H2NCOOCH. II—A test case for ion structure assignment

The unimolecular chemistry of the methyl carbamate radical cation, H₂NCOOCH, 1, has been further investigated by a combination of mass spectrometry-based experiments (metastable ion (MI), collisional activation (CA), collision-induced dissociative ionization (CIDI), neutralization-reionization (NR) Spectrometry and ²H labelling) and ab initio molecular orbital calculations, executed at the MP3/6–31G*//4–31G level of theory and corrected for zero-point vibrational energies. Apart from the previously located maxima, i.e. H₂NCOOCH₃^+·, 1, the distonic ion H₂NC(OH)OCH₃^+·, 2, hydrogen-bridged ions [H₂N? C?O…? H…?O?CH₂]^+·, 5, and [H₂N? CH?O…?…?H…?O?C? H]^+·, 7, there exist at least two other equilibrium structures, viz. the iminol ion H? N?C(OH)? OCH, la, and the hydrogen-bridged species [H₂C?O…?H…?N(H)COH], 6a, which is closely related to ion 5. Although the iminol ion la lies only 30 kJ mol^?1 above 1, our calculations indicate that the barriers for its formation either directly from ionized methyl carbamate 1 via a 1,3-hydrogen shift or indirectly via 1,4-hydrogen shifts from the distonic ion 2 are too high to allow the iminol ion to be involved in the unimolecular chemistry of ionized methyl carbamate. This explains the earlier observation that there are no H-D exchange reactions prior to decomposition of ionized labelled methyl carbamate, in contrast to the related ion methyl acetate. However, attempts to generate the iminol ion by loss of CH₃CN from CH₃CH?N? NHCOOCH₃ produced the more stable distonic ion 2 instead, but it proved very difficult to assign its structure unequivocally because 2 can rapidly interconvert with 1 and so virtually identical dissociation characteristics ensue. Only by integration of results obtained from many experiments and from ab initio calculations could structure 2 be assigned. The distonic ion 2 can undergo two transformations: after stretching of the C? OCH₂ bond the incipient formaldehyde can migrate within the electrostatic field of ionized hydroxyaminocarbene to the OH end to generate 5, but it can also migrate to the NH end to generate 6a. This explains the previous puzzling observation that H₂NCOOCD forms both CD₂OD^· and CD₂OH^· in CA and NR experiments. The calculations and experiments indicate that, although the ion is exceedingly difficult to characterize, the distonic ion 2 is the key intermediate for all the observed dissociations of methyl carbamate.     

Comparison of theory and experiment for excited singlet states of the H2 molecule

This paper presents a survey of published and unpublished ab initio calculations of the vibrational structures of the ten lowest electronic singlet states of the hydrogen molecule up to the H(n = 1) + H(n = 2) dissociation limit. The data are based on adiabatic potential functions (clamped-nuclei electronic energies and nuclear-mass-dependent diagonal corrections). Nonadiabatic coupling has been treated ab initio within the five states. of ¹Λ symmetry (X,EF, GK, HH?) and ¹Σ I.¹Π_g. The accuracies of the theoretical energies are determined by comparisons with experimental data for H₂, HD, and D₂. The level shifts and predissociation probabilities of the excited ¹Σ states, generated by nonadiabatic coupling with the discrete and continuous vibrational structure of the ground state, and radiative properties have also been calculated.     

Thermodynamic properties of the species resulting from the phenyl radical with O2 reaction system

Phenyl radicals are formed in combustion and oxidation systems by abstraction of the phenyl—hydrogen from benzene or aromatics by active radical species and by oxidation and thermal reactions of the benzylic carbon on alkyl‐substituted aromatics. The reaction of phenyl with O₂ leads to chain‐branching reactions and a number of unsaturated oxygenated hydrocarbon intermediates that may need to be included in detailed combustion models. Thermochemical parameters and structures on important species resulting from the phenyl radical + O₂ association and reaction are reported in this study. Enthalpies, Δ_f H, of a series of stable molecules, radicals, and transition state structures are calculated using ab initio (G3MP2B3 and G3) and density functional (DFT, B3LYP/6–311g(d,p) calculations, group additivity (GA), and literature data. The ab initio and density functional calculations are combined with isodesmic reaction analysis, whenever possible, to improve the accuracy of the enthalpy values. Entropies, S, and heat capacities, Cp_f298 (T), are calculated using density functional calculations, group additivity, and literature data. © 2008 Wiley Periodicals, Inc. Int J Chem Kinet 40: 583–604, 2008     

Linear and nonlinear feature of electronic excitation energy in carbon chains HC2n+1H and HC2nH

Density functional theory has been used to investigate the geometries, bonding, and vibrational frequencies of HC_2nH (n = 1–13) and HC_2n+1H (n = 2–12). Vertical excitation energies for the X¹Σ → 1¹Σ transition of HC_2nH (n = 1–5) and for the X³Σ → 1³Σ transition of HC_2n+1H (n = 2–5) have been calculated by the time‐dependent density functional theory and ab initio second‐order multiconfiguration perturbation method, respectively. On the basis of the present calculations, explicit expressions for the size dependence of excitation energy in linear polyynes HC_2n+1H and HC_2n+1H are suggested. Such analytical λ ? n relationships show good agreement with experimental observations. Theoretical investigations of relevant excited states demonstrate that distinct linear and nonlinear spectroscopic features in such polyynes can be ascribed to similarity and difference in bonding between the ground and excited states in HC_2n+1H and HC_2nH. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2004     

Theoretical investigation of the structures and properties of fluoromethyl peroxyl radicals

The equilibrium geometries, harmonic vibrational frequencies, charge distributions, spin density distributions, dipole moments, electron affinities (EAs), and C? O bond dissociation energies (BDEs) of HO, CH₃O, CH₂FO, CHF₂O, and CF₃O peroxyl radicals have been calculated using ab initio molecular orbital theory and density functional theory (DFT) at the B3LYP level. The C? H bond dissociation energies of the parent fluoromethanes have been calculated using the same levels of theory. Both the MP2(full) and B3LYP methods, using the 6‐31G(d,p) basis set, are found to be capable of accurately predicting the geometries of peroxyl radicals. Electron correlation accounts for ～25% of the C? H BDE of fluoromethanes and for ～50% of the C? O BDE of the corresponding peroxyl radicals. The B3LYP/6‐31G(d,p) method is found to be comparable to high ab initio levels in predicting C? O BDEs of studied peroxyl radicals and C? H BDEs of the parent alkanes. The progressive fluorine substitution of hydrogen atoms in methyl peroxyl radicals results in shortening of the C? O bond, lengthening of the O? O bond, an increase (decrease) of the spin density on the terminal (inner) oxygen, a decrease in the dipole moments, and an increase in electron affinities. Both C? O BDEs and EAs of peroxyl radicals (RO) correlate well with Taft σ* substituent constants for the R group in peroxyl radicals. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2004     

Structure and dissociation energy of weakly bound H (n = 5−8) complexes

The geometrical parameters, vibrational frequencies, and dissociation energies for H (n = 5–8) clusters have been investigated using high level ab initio quantum mechanical techniques with large basis sets. The highest level of theory employed in this study is TZ2P CCSD(T). The C₁ structure of H is predicted to be a global minimum, while the C_s structure of H is calculated to be a transition state. Harmonic vibrational frequencies are also determined at the DZP and TZ2P CCSD levels of theory. The dissociation energies, D_e, for H (n = 5–8) have been predicted using energy differences at each optimized geometry, and zero‐point vibrational energies (ZPVEs) are considered to compare with experimental values. The dissociation energies (D_o) have been predicted to be 1.69, 1.65, 1.65, and 1.46 kcal · mol for H, H, H (C₁ symmetry) and H, respectively, at the TZ2P CCSD(T) level of theory. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Quantum chemical study of alternating N/B and N/C π bonds in (un)charged even‐membered 4n and 4n+2 cyclic systems and their related open systems

With semi‐empirical MO and ab initio calculations at different levels, we investigated the π conjugation of alternating X? Y bonds with X? Y for N/B and N/C combinations in an open and cyclic arrangement. Although the intrinsic symmetry is lost for the acyclic even‐membered compounds, the alternation is still reflected in its geometry and electron‐density transfer. For the cyclic π compounds, we focused our attention on borazine N₃B₃H₆ (D_3h symmetry), which is isoelectronic with benzene (D_6h symmetry). Specific attention is given to the electrophilic behavior of borazine with respect to CH and SiMe. The dynamics based on the results of FT‐ICR mass spectrometry was studied in more detail. In addition, the results of the cyclic systems with 4n and 4n+2 π electrons concerning their geometries are compared with the corresponding carbon compounds. Attention is also given to the dication of borazine, because of the corresponding triplet ground state of the benzene dication. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Natural bond orbital analysis of some S‐nitrosothiols biological molecules

Theoretical study of several S‐nitrosothiols biological molecules has been performed using quantum computational ab initio RHF and density functional B3LYP and B3PW91 methods with 6‐31G(d,p) basis set. Geometries obtained from DFT calculations were used to perform natural bond orbital (NBO) analysis. It is noted that the weakness in the S? N sigma bond is due to n_O1→σ delocalization and is responsible for the longer S? N bond length in S‐nitrosothiols. It is also noted that decreased occupancy of the localized σ_SN orbital in the idealized Lewis structure or increased occupancy of σ of the non‐Lewis orbital, and their subsequent impact on molecular stability and geometry (bond lengths) are related with the resulting p character of the corresponding sulfur natural hybrid orbital of σ_SN bond orbital. In addition, the charge transfer energy decreases with the increasing of the Hammett constants of substituent groups, and the partial charge distribution on the skeletal atoms shows that the electrostatic repulsion or attraction between atoms can give a significant contribution to the intramolecular and intermolecular interaction. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

Is the FeC cluster linear? Theoretical study of the equilibrium structure and bonding of FeC

Ab initio electron correlation methods and density functional theory are used to investigate the structure, bonding, and stability of FeC. Theoretical calculations show that the ground state of the FeC anion strongly depends on the level of theory. The linear ⁴Σ^? state with an open configuration δ²σ¹ is predicted to be the ground state of FeC at the coupled‐cluster theory restricted to single, double, and noniterative triple excitations (CCSD[T])//CISD and multireference (MR) second‐order Moller–Plesset (MP2)//CAS self‐consistent field (SCF) levels. Next stable conformations are a C_2V ring structure II (⁴B₂) and a C_2V structure III (⁴A₂) in which Fe is bonded to one carbon atom of a triangular C₃. However, CISD and CCSD//CISD calculations show that the C_2V ring structure II and the C_2V structure III are more slightly stable than is the linear structure I of FeC. The harmonic vibrational frequencies and relevant vertical electron binding energies are reported. Possible detachment transitions in the photoelectron spectrum of FeC are discussed on the basis of current calculations. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 93: 275–279, 2003     

Ab initio study of the reaction of CHO+ with H2O and NH3

An MP4(full,SDTQ)/6-311++G(d,p)//MP2(full)/6-311++G(d,p) ab initio study was performed of the reactions of formyl and isoformyl cations with H₂O and NH₃, which play an important role in flame and interstellar chemistries. Two different confluent channels were located leading to CO+H₃O⁺/NH. The first one corresponds to the approach of the neutral molecule to the carbon atom of the cations. The second one leads to the direct proton transfer from the cations to the neutrals. At 900 K the separate products CO+H₃O⁺/NH are the most stable species along the Gibbs energy profiles for the processes. For the reaction with H₂O the reaction channel leading to HC(OH) (protonated formic acid) is disfavored with respect to the two CO+H₃O⁺ channels in agreement with the experimental evidence that H₃O⁺ is the major ion observed in hydrocarbon flames. According to our calculations, NH+H₂O are considerably more stable in Gibbs energy than NH₃+H₃O⁺;NH will predominate in the reaction zone when ammonia is added to CH₄+Ar diffusion flame, as experimentally observed. At 100 K the most stable structures are the intermediate complexes CO…HOH/HNH. Particularly the CO…HOH complex has a lifetime large enough to be detected and, therefore, could play a certain role in interstellar chemistry. ©1999 John Wiley & Sons, Inc. J Comput Chem 20: 1432–1443, 1999     

Quantum chemistry study on B14, B,and B14H

The structure of B₁₄, B, and B₁₄H in octahedral symmetry has been investigated by ab initio calculations at the STO-3G and 4–31G levels. The relationship of molecular orbitals among them has been analyzed and it can be found that the number of valence bonding orbitals of high borane obeys the Wade rule. The similarities and difference between boron clusters and carbon clusters are also discussed. © 1994 John Wiley & Sons, Inc.     

Vibrational Spectra,Force Constants and Bonding of the Tetrafluorochlorate(III) Anion,CIF, and of CIF5

The RAMAN spectrum of RbClF₄ is reported. The square-planar structure (D_4h symmetry) of ClF in RbClF₄ is confirmed. Force constants are calculated for ClF₄, indicating that the bonding in ClF₄ is best described by the semi?empirical molecular orbital model involving mainly two delocalized p electron?pairs of the chlorine atom for the formation of two semi?ionic 3 center?4 electron p–σ bonds. A very unusual occurrence of two bending modes at a frequency higher than that of one of the stretching modes has been observed in the vibrational spectra of ClF and a possible explanation is given. The approximately square-planar part of the ClF₅ molecule is compared with ClF. The assignment of the vibrational spectra and force constants reported by BEGUN et al. for ClF₅ are confirmed.     

Reorganization of highly preorganized hosts upon cation complexation: Ab initio study of fluorospherands

Fluorospherands (F‐spherands) are highly preorganized hosts composed of fluorobenzene or 4‐methylfluorobenzene units attached to one another at their 2,6‐positions. To understand the intrinsic factors affecting cation complexation, we investigated the complexation behavior between F‐spherands and cations using density functional theory (DFT) at the level of B3LYP/6‐31G**. The F6‐spherand (C₆H₃F)₆, ( 1 ) has a highly preorganized spherical cavity, which can encapsulate Li⁺ and Na⁺. Its cavity is not big enough for K⁺ and NH, which prefer external binding. Plausible conformations were studied for F8‐spherand (C₆H₃F)₈. Conformer of D_2d symmetry ( 2b ) is more stable than that of D_4d ( 2a ), in agreement with NMR experiments. The cavity size of F8‐spherand is big enough to encapsulate all cations studied. However, the cavity size of 2b is smaller than that of 2a , which resulted in the guest selectivity. Upon complexation, 2b conformation is more stable for Li⁺ and Na⁺, while 2a conformation is preferred for larger cations such as K⁺ and NH. Thus, the ab initio calculations over these highly preorganized fluorospherands give important insights into their host–guest chemistry. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Variation of the polarizability of the hydrogen molecule ion and the hydrogen molecule with internuclear separation

The variation of the polarizability of H and H₂ with internuclear separation R = 1.6 – R = 2.4 a.u. for H and R = 1.0 – R = 2.0 a.u. for H₂ is determined using a variational method suggested by Das and Bersohn. From these data, values of 〈α〉_0,J for which nuclear motion due to zero point vibration and centrifugal stretching is taken into account, are calculated at 300°K. The relative percent increases of the motion averaged values compared to the equilibrium values are as follows: 10.50% for H and 6.52% for H₂.     

The floating spherical gaussian orbital model and shape of B2H5 ion

The FSGO model has been used to make ab initio calculations of the geometry of B₂H ion. The results indicate that the acetylenic structure has the lowest energy (?43.881 a.u.) and the planar structure has the highest energy (?43.838 a.u.). The energy of the non-symmetric structure is only slightly higher (?43.879 a.u.) than that of the acetylenic one. Results of CNDO /2 calculations reported here also predict the acetylenic structure to be the most stable one.     

CH bond dissociation energies,isolated stretching frequencies,and radical stabilization energy

An earlier correlation between isolated CH stretching frequencies, v, and experimental CH bond dissociation energies, in hydrocarbons, fluorocarbons, and CHO compounds, is updated. A stabilization energy, E, which reflects only the properties of the radical, is defined by the deviation of a point from the above correlation. E values for a variety of radicals are listed and discussed. In H? C? N and H? C? O compounds E is low or negligible, due to the low v found in these compounds. The conventional definition of E_S then represents a serious misnomer, which distracts attention from the probable source of discrepancies between experimental and ab initio values of DH°(C? H), namely, the parent molecules. Stereo electronic effects concerned with the breaking of CH bonds are predicted in a variety of situations. Some experimental determinations of DH°(C? H), viz., in C₂H₄, HCOOH, CH₃CHO, CH₃NH₂, are considered to be probably in error. Schemes for partitioning energies of atomization into ‘standard’ or ‘intrinsic’ bond energies are criticized.     

Schwingungsspektroskopische Untersuchungen an den geordneten Perowskiten ABIReVIIO6

Vibrational Spectroscopie Investigations on the Ordered Perovskites A B^IRe^VIIO₆ The vibrational spectra of the ordered perovskites AB^IRe^VIIO₆ with A = Ba, Sr; B = Li, Na are reported. For the cubic Ba compounds the force constants for the ReO₆ octahedra (O_h), the bond order in the Re? O distances have been calculated.     

Polysila analogs of aromatic hydrocarbon ions: Structures and energies of Si3H3+, Si4H,and Si5H5−

Silicon analogs of aromatic monocyclic ions, (SiH) ( 4 ), (SiH) ( 5 ), and (SiH) ( 6 ) have been studied ab initio at MP 2(full)/6-31G *. The D_3h structure of Si₃H₃⁺ is the global minimum, whereas other two ions are nonplanar. The D_2d structure of (SiH) is less folded than the carbon analog and possesses a higher stabilization energy. Stabilization energies for the monocharged ions are diminished with respect to the corresponding carbons © 1993 John Wiley & Sons, Inc.     

C?H bonds with a Positive Dipole Gradient Can Form Blue‐Shifting Hydrogen Bonds: The Complex of Halothane with Methyl Fluoride

The complex of halothane (CF₃CBrClH) with ([D₃])methyl fluoride is investigated theoretically by means of ab initio calculations at the MP2/6‐311++G(d,p) level and experimentally by infrared spectroscopy of solutions in liquid krypton. The complexation energy is calculated to be ?12.5 kJ mol^?1. The dipole moment of halothane monomer as a function of the C? H stretching coordinate is calculated with different methodologies and the value of (?μ/?Q₁)₀ is found to be positive. In the spectra, formation of a 1:1 complex is observed. The standard complexation enthalpy is measured to be ?8.4(2) kJ mol^?1. The C? H stretching vibration of halothane shows a blueshift of +15.4 cm^?1 on complexation, and its infrared intensity ratio ε_complex/ε_monomer is found to be 1.39(7). The frequency shift is analyzed by a Morokuma analysis, and the infrared intensities are rationalized by using a model which includes the mechanical and electrical anharmonicity of the C? H stretching vibration.     

Ab initio and DFT studies of the vibrational spectra of hydrogen-bonded PhOH...(H2O)4 complexes

The vibrational characteristics (vibrational frequencies and infrared intensities) for the hydrogen-bonded complex of phenol with four water molecules PhOH...(H2O)4 (structure 4A) have been predicted using ab initio and DFT (B3LYP) calculations with 6-31G(d,p) basis set. The changes in the vibrational characteristics from free monomers to a complex have been calculated. The ab initio and B3LYP calculations show that the observed four intense bands at 3299, 3341, 3386 and 3430 cm(-1) can be assigned to the hydrogen-bonded OH stretching vibrations in the complex PhOH...(H2O)4 (4A). The complexation leads to very large red shifts of these vibrations and very strong increase in their IR intensity. The predicted red shifts for these vibrations with B3LYP/6-31G(d,p) calculations are in very good agreement with the experimentally observed. It was established that the phenolic OH stretching vibration is the most sensitive to the hydrogen bonding. The predicted red-shift with the B3LYP/6-31G(d,p) calculations for the most stable ring structure 4A (-590 cm(-1)) is in better agreement with the experimentally observed than the red-shift, predicted with SCF/6-31G(d,p) calculations. The magnitude of the wavenumber shift is indicative of relatively strong OH...H hydrogen-bonded interaction. The complexation between phenol and four water molecules leads to strong increase of the IR intensity of the phenolic OH stretching vibration (up to 38 times).