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1.
The dinuclear ligand 1 based on the bis-(2-amino-pyridinyl-6-methyl)amine (BAPA) metal binding unit and featuring a two-atom disulfide bridge was synthesized and studied as hydrolytic catalysts for phosphate diesters. The Zn(II) complexes of BAPA are known to elicit the cooperation between the metal ion and the hydrogen-bond donating amino groups to greatly increase the rate of cleavage of phosphate diesters. The reactivity of the dinuclear complex 1·Zn(II)2 toward bis-p-nitrophenyl phosphate and plasmid DNA was investigated and compared with that of reference complexes devoid of the disulfide bridge or of the hydrogen-bond donating amino groups. The dimetallic Zn(II) complex produces remarkable accelerations of the rate of cleavage of both the substrates accompanied by significant differences. In the case of BNP, the presence of the disulfide bridge does not lead to the improvement of the cooperative action of the two metal ions expected as the result of better preorganization. On the other hand, in the case of DNA the complex 1·Zn(II)2 is much more reactive that the corresponding reference devoid of the disulfide bridge. Hence, different requisites must be fulfilled by a good catalyst for the cleavage of the two substrates. Moreover, binding studies with DNA indicated that the presence of two metal ions in the complex or of the pyridine amino groups, but not of the disulfide bridge, results into an enhanced affinity of the complexes toward this substrate.  相似文献   

2.
The synthesis and crystal structures of three new metal organic frameworks of type [Zn(L-2H)] n (1), {[ZnLCl2](CH3CN)0.5(DMF)0.5(H2O)0.5} n (2) and {[CdL(DMF)(NO3)2]·DMF} n (3), all based on the dipyridyl-derivatised macrocycle, dipyridyldibenzotetraaza[14]annulene (L), are reported along with the X-ray structure of the protonated metal-free ligand as its perchlorate salt, [(HL)(ClO4)] n (4). In [Zn(L-2H)] n , the zinc ion occupies the macrocyclic cavity, being bound to the N4-donor set of the macrocyclic ring in its doubly deprotonated form. Each zinc atom is also axially bound by a pyridyl moiety from an adjacent complex, resulting in formation of an infinite one-dimensional chain of the ??herringbone?? type in which pairs of macrocyclic complexes interact via face-to-face ?ШC?? stacking interactions. In contrast, the zinc ion in {[ZnLCl2](CH3CN)0.5(DMF)0.5(H2O)0.5} n does not occupy the macrocyclic cavity but is bound to a pyridyl nitrogen from two ligands such that it acts as a bridge between macrocyclic units and results in the generation of a one-dimensional chain. Two chloro ligands also bind to each zinc centre to yield a distorted tetrahedral coordination geometry. Offset ?ШC?? stacking occurs between adjacent chains involving alternate macrocycles in each chain, giving rise to a zig-zag arrangement. Pairs of interacting chains pass through the above-mentioned chains to generate further ?ШC?? stacking to yield an overall three-dimensional structure that contains large ellipsoidal-shaped channels. In {[CdL(DMF)(NO3)2]·DMF} n the cadmium ion again does not occupy the macrocyclic cavity but acts as a bridge between macrocycles to once again afford a linear chain structure. Each cadmium is bound to two pyridyl groups (arising from different molecules of L), two nitrato ligands and one oxygen-bound dimethylformamide molecule to yield a distorted pentagonal bipyramidal coordination geometry. The protonated ligand, [(HL)(ClO4)] n , adopts a linear chain structure in which one pyridyl group is protonated and interacts intermolecularly via a hydrogen bond with the non-protonated pyridyl group of an adjacent macrocyclic unit to yield a hydrogen-bonded linear chain structure.  相似文献   

3.
Four copper(II) complexes containing Schiff base and reduced Schiff base ligands derived from pyridine-2-aldehyde and amino acid containing carboxylate and sulfonate functional groups (N-(2-pyridylmethylene)-amino acid and N-(2-pyridylmethyl)-amino acid, (amino acids = ??-alanine and aminoethanesulfonic acid) namely, [Cu(Pbals)(H2O)2]ClO4·H2O 1, [Cu(Pbal)(ClO4)(H2O)] 2, [Cu2(Paes)2(ClO4)2]·2H2O 3, and [Cu(Pae)(H2O)]·ClO4·H2O 4 have been synthesized and characterized. The structural features of carboxylate and sulfonate donor groups have been elucidated. These copper(II) complexes demonstrate different coordination behaviour of the carboxylate and sulfonate groups. Carboxylate groups in complexes 1 and 2 bridge the metal centers and facilitate the formation of 1D helical coordination polymeric structures. In compound 3, the sulfonate groups bridge the metal centers to form a discrete dinuclear complex. In 4, the sulfonate groups link the neighbouring metal centers to form a 1D coordination polymeric structure.  相似文献   

4.
The reaction of NaEt3BH with Nb2(-SMe2)3Cl6 results in the transfer of a hydride ion to dimethylthioether with concomitant production of methane. Further reaction with potassium di-p-tolylformamidinate, KDTolF, yields Nb2(-SMe)2(-DTolF)22-DTolF:)2.2 toluene, 1. In the latter, two thiomethoxide ions and two DTolF groups bridge the trivalent niobium atoms. Each of the other two DTolF groups chelate a metal atom to give the molecule an edge-sharing bioctahedral structure, The niobium-niobium distance of 2.655(2) A is consistent with the presence of a double bond between the metal atoms.  相似文献   

5.
An ion of m/z 110.06036 (ion formula [C6H8NO]+; error: 0.32 mDa) was observed in the collision induced dissociation tandem mass spectrometry experiments of protonated N-(3-aminophenyl)benzamide, which is a rearrangement product ion purportedly through nitrogen-oxygen (N–O) exchange. The N–O exchange rearrangement was confirmed by the MS/MS spectrum of protonated N-(3-aminophenyl)-O 18 -benzamide, where the rearranged ion, [C6H8NO 18 ]+ of m/z 112 was available because of the presence of O 18 . Theoretical calculations using Density Functional Theory (DFT) at B3LYP/6-31 g(d) level suggest that an ion-neutral complex containing a water molecule and a nitrilium ion was formed via a transition state (TS-1), followed by the water molecule migrating to the anilide ring, eventually leading to the formation of the rearranged ion of m/z 110. The rearrangement can be generalized to other protonated amide compounds with electron-donating groups at the meta position, such as, –OH, –CH3, –OCH3, –NH(CH3)2, –NH-Ph, and –NHCOCH3, all of which show the corresponding rearranged ions in MS/MS spectra. However, the protonated amide compounds containing electron-withdrawing groups, including –Cl, –Br, –CN, –NO2, and –CF3, at the meta position did not display this type of rearrangement during dissociation. Additionally, effects of various acyl groups on the rearrangement were investigated. It was found that the rearrangement can be enhanced by substitution on the ring of the benzoyl with electron-withdrawing groups.  相似文献   

6.
The complexing of protonated chitosan with dodecyl sulfate ions in water solutions is studied using IR spectroscopy data and quantum-chemical calculations. It is established that the electrostatic interaction between the protonated amino groups of chitosan and dodecyl sulfate ions is apparent in the IR spectrum as a band at 833 cm?1. The need to consider the effect the solvent has on the formation of hydrogen-bound ion pairs [CTS+ ? C12H25O3-] is shown via a quantum-chemical simulation of the equilibrium geometry and the energy characteristics of complexing and hydration.  相似文献   

7.
Four scandium phosphate-based structures have been prepared hydrothermally in the presence of the primary diamines ethylenediamine and diaminobutane and the primary amine cyclohexylamine and characterised by single crystal and powder X-ray diffraction, 31P and 45Sc solid-state MAS NMR and chemical analysis. Charge balancing protons in the structures are located using bond valence sum calculations and postulated hydrogen bonding networks. Compound 1, [(H3NC2H4NH3)3][Sc3(OH)2(PO4)2(HPO4)3(H2PO4)], , a=5.4334(6), b=8.5731(9), , α=79.732(4), β=83.544(4), γ=80.891(5)°, Z=2, is built up of scandium phosphate ribbons, based on trimers of ScO6 octahedra linked by OH groups. These trimers are joined through phosphate groups bound through three oxygens, and are decorated by phosphate groups linked by a single oxygen atom. The ribbons are arranged parallel to the a-axis and linked one to another by fully protonated ethylenediammonium ions. Compounds 2, [(H3NC4H8NH3)3][(Sc(OH2))6Sc2(HPO4)12(PO4)2], , a=13.8724(3), , Z=1, and 3, [(H3NC4H8NH3)2(H3O)][Sc5F4(HPO4)8], C2/m, a=12.8538(4), b=14.9106(4), , β=101.17(9)°, Z=2, were prepared using diaminobutane as the organic template in the absence and presence, respectively, of fluoride ions in the gel. Compound 2 has a pillared layered structure, in which ScO6 octahedra are linked by three vertices of hydrogenphosphate groups into sheets and the sheets pillared by ScO6 octahedra to give a three-dimensionally connected framework isostructural with a previously reported iron(III) hydrogenphosphate. The protonated diaminobutane molecules occupy cavities between the layers. Compound 3 has a layered structure in which isolated ScO6 octahedra and tetrameric arrangements of ScO4F2 octahedra, the latter linked in squares through fluoride ions, are connected by phosphate tetrahedra that share two or three oxygens with scandium atoms. In this structure, the protonated diaminobutane molecules connect the layers, the -NH3+ groups fitting into recesses in the layers. Compound 4, [(C6H11NH3)][ScF(HPO4)(H2PO4)], Pbca, a=7.650(3), b=12.867(5), , Z=8, the first scandium phosphate to be prepared with a monoamine, is also a layered solid. In this case, the layers contain single chains of ScO4F2 octahedra which share fluoride ions in trans positions. Phosphate tetrahedra bridge across scandiums via two of their four oxygens, both within the same chain and also to neighbouring chains to make up the layer. The protonated amine groups of the cyclohexylamine molecules achieve close contact with phosphates of the layer, while the cyclohexyl moieties, which are in the chair configuration, project into the interlayer space.  相似文献   

8.
In our previous work the influence of water evaporation on Attenuated Total Reflectance Fourier Transform Infrared (ATR-FTIR) spectra of l-phenylalanine (l-phe) in a function of pH (Olsztynska et al. Appl. Spectrosc. 60(9):1040, (14)) was studied. The presence of symmetric dimers of hydrogen-bonded amino acid was observed when simultaneously CO2 ? ionised and COOH unionised forms of the amino acid appear in the solution (near pK 1). It is suggested that Near Infrared (NIR) radiation may induce partial protonation of CO2 ? groups at a neutral pH and formation the same type of dimers. The aim of this work was to study this hypothesis. Therefore, ATR-FTIR spectra of l-phe aqueous solution before and after NIR radiation (15?min., 700?C2,000?nm) were obtained as a continuation of our earlier studies. Spectral characteristic bands of l-phe were described. The vibrational spectroscopic study of l-phe showed that it undergoes photochemical reactions under NIR exposure. It has been found that the irradiation process indeed induces a protonation of polar groups of l-phe at neutral pH what leads to forming of neutral forms and as a consequence hydrogen bonded dimers ?CC=O···HOOC?C. Moreover, hydrophobic interactions strongly increase, what favours aggregation of l-phe molecules. The phenomenon is probably due to modifications of water structure around l-phe molecules. Intra- and intermolecular hydrogen bonds weaken which could favour aggregation and protonation of polar groups what induces also formation of symmetrical hydrogen bonds between protonated and deprotonated carboxylic groups.  相似文献   

9.
Collision-induced dissociation (or tandem mass spectrometry, MS/MS) of a protonated peptide results in a spectrum of fragment ions that is useful for inferring amino acid sequence. This is now commonplace and a foundation of proteomics. The underlying chemical and physical processes are believed to be those familiar from physical organic chemistry and chemical kinetics. However, first-principles predictions remain intractable because of the conflicting necessities for high accuracy (to achieve qualitatively correct kinetics) and computational speed (to compensate for the high cost of reliable calculations on such large molecules). To make progress, shortcuts are needed. Inspired by the popular mobile proton model, we have previously proposed a simplified theoretical model in which the gas-phase fragmentation pattern of protonated peptides reflects the relative stabilities of N-protonated isomers, thus avoiding the need for transition-state information. For singly protonated Ala n (n = 3–11), the resulting predictions were in qualitative agreement with the results from low-energy MS/MS experiments. Here, the comparison is extended to a model tryptic peptide, doubly protonated Ala8Arg. This is of interest because doubly protonated tryptic peptides are the most important in proteomics. In comparison with experimental results, our model seriously overpredicts the degree of backbone fragmentation at N9. We offer an improved model that corrects this deficiency. The principal change is to include Coulombic barriers, which hinder the separation of the product cations from each other. Coulombic barriers may be equally important in MS/MS of all multiply charged peptide ions.
Graphical Abstract ?
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10.
Binding of chloride anion by protonated polyamines was investigated by 35Cl? NMR spectroscopy. The presence of protonated macro(poly)cyclic polyamines caused downfield shifts and significant line broadening of the 53Cl? NMR signals. 35Cl? NMR spectroscopy was used for complex-formation stoichiometry determination and revealed the formation of a binuclear chloride complex with the fully protonated ditopic hexaazamacrocyclic receptor 6 . 35Cl? NMR spectroscopy was also applied in competition experiments between Cl? and SO42? and demonstrated that the fully protonated macrocyclic hexaamine 4 forms a strong complex with SO4?2 with 1:1 stoichiometry.  相似文献   

11.
It was shown by 1H NMR spectroscopy that 2-(5-R1-2-furyl)-3-R2-1-R1-pyrroles (R1= H, Me; R2=H, Me; R3=H, Et, CH=CH2) are protonated by acids (HSO3F, HCO2CF3, HCl, HBr) either at the C(5) atom of the pyrrole ring or at the C(5) atom of the furan ring, depending on the conditions. The energies of formation (H), the charges, and the partial electron densities of the boundary orbitals of 2-(2-furyl)pyrrole (I) and its protonated forms (IA and IB) were calculated by the MNDO method. The calculated H values for the IA and IB forms are in agreement with their experimental ratio. According to the calculated reactivity indexes, the protonation of pyrrole is subject to orbital control and may include the prior formation of less stable protonated forms.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 10, pp. 1343–1355, October, 1989.  相似文献   

12.
The syntheses of the pentadentate ligand 1,4-bis(carboxymethyl)-1,4,7-triazacyclononane (LH2) and its use in the preparation of [LHCu]ClO4 (1), and a mononuclear iron(III) complex ([LFeCl] (2)) are reported. The hydrolysis of 2 in the presence of an excess of NaClO4 resulted in the crystallization of a binuclear complex, [Fe2(μ-O)L2] · (NaClO4)3 · CH3OH · 3H2O (3). The crystal structures of 13 have been determined by single-crystal X-ray crystallography. In complex 1, the Cu(II) centre is in square based pyramidal environment, with two nitrogen atoms from the tacn ring and two oxygen atoms from two different carboxylate groups lying in the basal plane and the third nitrogen atom occupying the apical position. One pendant acetic acid group is protonated and, instead of coordinating to the copper(II) centre, participates in hydrogen bonding interactions with the perchlorate counter-ion. The coordinated carboxylate group forms a bridge to the copper atom of an adjacent [LHCu]+ molecule, thus generating 1D-helical chains. The compound exhibits weak ferromagnetic coupling probably due to weak interactions between [LHCu]+ molecules. In complex 2, the iron(III) centre is in a distorted octahedral geometry, with the fac-coordinated triamine ring, two carboxylate groups and one chloride ligand occupying the coordination sphere. In the binuclear complex 3, two iron(III) centres are bridged by one oxygen atom to form a μ-oxo-diiron(III) complex with an Fe?Fe distance of 3.423(3) Å and a non-linear Fe–O–Fe angle of 144.4°. This binuclear complex features strong antiferromagnetic coupling between the two iron(III) centres.  相似文献   

13.
Interactions between l-aspartic acids (Asp) and polyamines (PA): 3,3-tri (1,7-diamino-4-azaheptane) or spermidine (Spd, 1,8-diamino-4-azaoctane) are investigated in metal-free systems as well as between Cu(II) ions in ternary systems with Asp and 3,3-tri or Spd. The composition and stability constants of the complexes formed have been determined by a potentiometric method, while the centres of interactions in the ligands have been identified by NMR, UV–Vis, IR, and EPR spectroscopy. The centres are the potential sites of metal ion coordination. In the Asp/PA systems, formation of molecular complexes (Asp)Hx(PA) was observed. Comparison of the log Ke of the adducts showed that the stability of the adducts significantly depends on the steric factor contributed by the length of PA. In the (Asp)H3(PA) species, an inversion effect was observed where one of the amine groups (deprotonated) of 3,3-tri or Spd becomes a negative reaction centre and reacts with the protonated amino group of Asp. Therefore, depending on pH, the amino group of the PA can act as a positive or negative reaction centre. In the ternary systems of Cu(II)/Asp/PA the heteroligand-protonated complexes and molecular complexes are formed. In the molecular complexes ML?L′, where L = Asp and L′ = PA, the metallation involves oxygen atoms from the carboxyl groups and the amino group of the amino acid, while the fully protonated PA is located outside the inner coordination sphere and reacts with the anchoring binary complex CuH(Asp) or Cu(Asp). Introduction of metal ions into the Asp/3,3-tri system was found to change the character of the interaction and in the Cu(Asp)H2(3,3-tri) complex, the oxygen atoms from the Asp carboxyl groups do not take part in coordination.  相似文献   

14.
The structures of isomeric 2-and 4-azidostyrylquinolines and their protonated forms in the ground (S 0) and the lowest excited singlet (S 1) states were calculated by the PM3 semiempirical method and the density functional theory (DFT) using the B3LYP/6-31G* basis set. It was shown that the σ NN * molecular orbital, which is localized on the azide group and is antibonding for the N-N2 bond, is populated in the S1 state of these azides in both neutral and protonated forms. Based on this result, it was assumed that the test azides would be photoactive in both forms, i.e., would have a photodissociation quantum yield of φ > 0.1. The calculation of absorption spectra by the TD B3LYP/6-31G* method showed that the long-wavelength absorption bands of the protonated forms are shifted to visible spectral region, thus suggesting that azidostyrylquinolines in the protonated form will be sensitive to visible light.  相似文献   

15.
Reaction of [MnCl2(tren)] with tren (tris‐(2‐aminoethyl)amine) affords the coordination polymer ( 1 ), in which the primary amino groups of tridentate tren ligands connect [(tren)Mn]2+ fragments into a pseudo 63 network. The Mn atoms exhibit a capped octahedral environment with the tertiary N atom of the second tetradentate tren ligand in the capping position. Treatment of MnCl2 with Se at 1:2 molar ratio in H2O/tren (10:1) at 150 °C leads to formation of the dinuclear complex [{Mn(μ‐Se6)(tren)}2] ( 2 ), which contains tetradentate tren ligands and two bridging hexaselenide ligands in the 1κSe1 : 2κSe6 mode. In contrast, reaction of [MnCl2(tren)] with Se at a 1:6 molar ratio under similar sovothermal conditions affords the isomeric coordination polymer ( 3 ). In this complex, Se62? anions now bridge [(tren)Mn]2+ fragments into chains, that themselves are linked into polymeric sheets through one of the primary amino groups of the tetradentate tren ligands.  相似文献   

16.
A new organically templated vanadium tellurite, poly[2,2′‐iminodiethanaminium [hexa‐μ2‐oxido‐tetraoxidoditellurium(IV)divanadium(V)] dihydrate], {(C4H15N3)[Te2V2O10]·2H2O}n, features the interconnection of distorted [VO5] trigonal bipyramids by bridging [TeO3] pyramids, leading to a two‐dimensional corrugated anionic layer with an interlayer distance of about 13.47 Å. The interlayer space is occupied by doubly protonated diethylenetriamine cations (H2dien) and guest water molecules. The two terminal amino groups of H2dien are protonated, while the middle amino group, located on a twofold rotation axis, is not protonated. All the three amino groups and water molecules are involved in hydrogen‐bonding interactions. The compound represents a new member in the series (H2am)[(VO2)(TeO3)]2·xH2O, where H2am represents a doubly protonated diamine. Similarities and differences between the structures of members of the series are discussed.  相似文献   

17.
Heparin detective : Silica nanoparticles functionalised with ion‐channel scaffolds were prepared and used for the chromofluorogenic sensing of heparin in aqueous environments (see figure). The surface of the nanoparticles was functionalised with polyamines (binding sites) and thiols. The reaction of a dye (squaraine) with the surface thiol groups was selectively inhibited by the coordination of heparin with the partly protonated polyamines.

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18.
19.
Deamidation is a major fragmentation channel upon activation by collision induced dissociation (CID) for protonated peptides containing glutamine (Gln) and asparagine (Asn) residues. Here, we investigate these NH3-loss reactions for four Asn- and Gln-containing protonated peptides in terms of the resulting product ion structures using infrared ion spectroscopy with the free electron laser FELIX. The influence of the side chain length (Asn versus Gln) and of the amino acid sequence on the deamidation reaction has been examined. Molecular structures for the product ions are determined by comparison of experimental IR spectra with spectra predicted by density functional theory (DFT). The reaction mechanisms identified for the four dipeptides AlaAsn, AsnAla, AlaGln, and GlnAla are not the same. For all four dipeptides, primary deamidation takes place from the amide side chain (and not from the N-terminus) and, in most cases, resembles the mechanisms previously identified for the protonated amino acids asparagine and glutamine. Secondary fragmentation reactions of the deamidation products have also been characterized and provide further insight in – and confirmation of – the identified mechanisms. Overall, this study provides a comprehensive molecular structure map of the deamidation chemistry of this series of dipeptides.
Graphical Abstract ?
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20.
Crystals of [(C3NO2H7)2H2SO4] composition were analyzed by single-crystal X-ray diffraction (triclinic, P , a = 7.431(3), b = 9.826(3), c = 10.081(3) , = 120.07(5), = 104.73(5), = 94.24(5)°). The independent part of the unit cell contains two alanine molecules and one sulfate ion. The amino group is additionally protonated in both molecules. One of the alanine molecules forms a hydrogen bond to the symmetry-related molecule to yield a DL-pair, while the other alanine molecule is hydrogen-bonded to the sulfate ion only.  相似文献   

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