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1.
A full quantitative analysis of Fe K-edge X-ray absorption spectra has been performed for hemes in two porphynato complexes, that is, iron(III) tetraphenylporphyrin chloride (Fe(III)TPPCl) and iron(III) tetraphenylporphyrin bis(imidazole) (Fe(III)TPP(Imid)2), in two protein complexes whose X-ray structure is known at atomic resolution (1.0 A), that is, ferrous deoxy-myoglobin (Fe(II)Mb) and ferric aquo-myoglobin (Fe(III)MbH2O), and in ferric cyano-myoglobin (Fe(III)MbCN), whose X-ray structure is known at lower resolution (1.4 A). The analysis has been performed via the multiple scattering approach, starting from a muffin tin approximation of the molecular potential. The Fe-heme structure has been obtained by analyzing independently the Extended X-ray Absorption Fine Structure (EXAFS) region and the X-ray Absorption Near Edge Structure (XANES) region. The EXAFS structural results are in full agreement with the crystallographic values of the models, with an accuracy of +/- 0.02 A for Fe-ligand distances, and +/-6 degrees for angular parameters. All the XANES features above the theoretical zero energy (in the lower rising edge) are well accounted for by single-channel calculations, for both Fe(II) and Fe(III) hemes, and the Fe-N p distance is determined with the same accuracy as EXAFS. XANES evaluations of Fe-5th and Fe-6th ligand distances are determined with 0.04-0.07 A accuracy; a small discrepancy with EXAFS (0.01 to 0.05 A beyond the statistical error), is found for protein compounds. Concerns from statistical correlation among parameters and multiple minima in the parameter space are discussed. As expected, the XANES accuracy is slightly lower than what was found for polarized XANES on Fe(III)MbCN single crystal (0.03-0.04 A), and states the actual state-of-the-art of XANES analysis when used to extract heme-normal parameters in a solution spectrum dominated by heme-plane scattering.  相似文献   

2.
The oxidation-induced structural change of a water-oxidizing diruthenium complex, [(bpy)(2)(H(2)O)Ru(III)(micro-O)Ru(III)(OH(2))(bpy)(2)](4+) (bpy = 2,2'-bipyridine), was investigated by means of X-ray absorption spectroscopy. Ru K-edge XANES (X-ray absorption near-edge structure) spectra from the acidic solution and solid precipitates obtained by oxidation showed that the absorption edge shifts toward higher energy with a preedge feature slightly more enhanced than those of the lower oxidation states. This indicates that the higher oxidation state has a lower symmetry due to shortening of the Ru-O bonds that originated from the water ligands. The EXAFS (extended X-ray absorption fine structure) spectra were similar to those of the lower oxidation states, whose analysis revealed the existence of short Ru-O double bonds and an almost linear Ru-O-Ru angle (169 +/- 2 degrees ). Ab initio EXAFS simulations for several possible structural models suggest that the dimeric structure is maintained during the water oxidation reaction.  相似文献   

3.
Total reflection X-ray Fluorescence (TXRF) analysis in combination with X-ray Absorption Near Edge Structure (XANES) analysis is a powerful method to perform chemical speciation studies at trace element levels. However, when measuring samples with higher concentrations and in particular standards, damping of the oscillations is observed. In this study the influence of self-absorption effects on TXRF–XANES measurements was investigated by comparing measurements with theoretical calculations. As(V) standard solutions were prepared at various concentrations and dried on flat substrates. The measurements showed a correlation between the damping of the oscillations and the As mass deposited. A Monte-Carlo simulation was developed using data of the samples shapes obtained from confocal white light microscopy. The results showed good agreement with the measurements; they confirmed that the key parameters are the density of the investigated atom in the dried residues and the shape of the residue, parameters that combined define the total mass crossed by a certain portion of the incident beam. The study presents a simple approach for an a priori evaluation of the self-absorption in TXRF X-ray absorption studies. The consequences for Extended X-ray Absorption Fine Structure (EXAFS) and XANES measurements under grazing incidence conditions are discussed, leading to the conclusion that the damping of the oscillations seems to make EXAFS of concentrated samples non feasible. For XANES “fingerprint” analysis samples should be prepared with a deposited mass and sample shape leading to an acceptable absorption for the actual investigation.  相似文献   

4.
In this study, we perform steady-state and time-resolved X-ray absorption spectroscopy (XAS) on the iron K-edge of [Fe(tren(py)3)](PF6)2 dissolved in acetonitrile solution. Static XAS measurements on the low-spin parent compound and its high-spin analogue, [Fe(tren(6-Me-py)3)](PF6)2, reveal distinct spectroscopic signatures for the two spin states in the X-ray absorption near-edge structure (XANES) and in the X-ray absorption fine structure (EXAFS). For the time-resolved studies, 100 fs, 400 nm pump pulses initiate a charge-transfer transition in the low-spin complex. The subsequent electronic and geometric changes associated with the formation of the high-spin excited state are probed with 70 ps, 7.1 keV, tunable X-ray pulses derived from the Advanced Light Source (ALS). Modeling of the transient XAS data reveals that the average iron-nitrogen (Fe-N) bond is lengthened by 0.21+/-0.03 A in the high-spin excited state relative to the ground state within 70 ps. This structural modification causes a change in the metal-ligand interactions as reflected by the altered density of states of the unoccupied metal orbitals. Our results constitute the first direct measurements of the dynamic atomic and electronic structural rearrangements occurring during a photoinduced FeII spin crossover reaction in solution via picosecond X-ray absorption spectroscopy.  相似文献   

5.
Radiative Auger spectra are weak X-ray emission spectra near the characteristic X-ray lines. Radiative Auger process is an intrinsic energy-loss process in an atom when a characteristic X-ray photon is emitted, due to an atomic many-body effect. The energy loss spectra correspond to the unoccupied conduction band structure of materials. Therefore the radiative Auger effect is an alternative tool to the X-ray absorption spectroscopy such as EXAFS (Extended X-ray Absorption Fine Structure) and XANES (X-ray Absorption Near Edge Structure), and thus it is named EXEFS (Extended X-ray Emission Fine Structure). By the use of a commercially available X-ray fluorescence spectrometer or an electron probe microanalyzer (EPMA), which are frequently used in materials industries, we can obtain an EXEFS spectrum within 20 min. The radiative Auger effect, as an example, demonstrates that the study on atomic many-body effects has become a powerful tool for crystal and electronic structure characterizations. The EXEFS method has already been used in many industries in Japan. Reviews about the applications and basic study results on the radiative Auger effect are reported in this paper.  相似文献   

6.
A copper bromide complex based on benzoin 1′-phthalazinylhydrazone is synthesized. Within density functional theory (OPBE/TZP) the optimal structural parameters of the complex are determined. X-ray Absorption Near-Edge Structure (XANES) spectra above the K absorption edge of copper are measured in the copper bromide complex. Theoretical XANES spectra of the K absorption edge of copper are calculated based on the full multiple scattering method and in the full potential of the finite difference method. Good agreement between the theoretical XANES spectrum and the experimental data is obtained.  相似文献   

7.
Combined experimental and DFT-TD-DFT computational studies were utilized to investigate the structural and electronic properties of mixed-ligand monometallic ruthenium(II) complexes of compositions [(bpy)(2)Ru(H(2)Imdc)](+) (1(+)), its N-H deprotonated form [(bpy)(2)Ru(HImdc)] (1), and COOH deprotonated form [(bpy)(2)Ru(Imdc)](-) (1(-)), where H(3)Imdc = imidazole-4,5-dicarboxylic acid and bpy = 2,2'-bipyridine. The optimized geometrical parameters for the complexes computed both in the gas phase and in solution are reported and compared with the previously reported X-ray data. The influence of pH on the absorption, emission, and redox properties of [(bpy)(2)Ru(H(2)Imdc)](+) (1(+)) has been thoroughly investigated. The absorption titration data were used to determine the ground state pK values, whereas the luminescence data were utilized for the determination of excited state acid dissociation constants. The proton-coupled redox activity of 1(+) has been studied over the pH range 2-12 in acetonitrile-water (3:2). From the E(1/2) versus pH profile, the equilibrium constants of the variously deprotonated complex species in Ru(II) and Ru(III) oxidation states have been determined. As compared to the protonated complex (1(+)), which undergoes reversible oxidation at 0.96 V (vs Ag/AgCl) in acetonitrile, the redox potential of the fully deprotonated complex (1(-)) is shifted to a much lower value, viz., 0.52 V. Density functional theory (DFT) and time-dependent DFT (TD-DFT) study provides insight into the nature of the ground and excited states with resulting detailed assignments of the orbitals involved in absorption and emission transitions. In particular, the red-shifts of the absorption and emission bands and the cathodic shift in the oxidation potential of 1(+) compared to 1 and 1(-) are also reproduced by our calculations.  相似文献   

8.
H/D isotopic substitution neutron scattering and X-ray scattering have been used to investigate the short and intermediate range solution structure in a 1 m aqueous solution of lanthanum chloride. To improve the reliability of the local structural information on the cation environment, information has been incorporated from Extended X-ray Absorption Fine Structure (EXAFS) spectroscopy data into the applied analytical framework. The markedly different structural sensitivities of the experimental probes allow the construction of a detailed three-dimensional atomistic model using the Empirical Potential Structure Refinement (EPSR) technique. The results show that at the investigated concentration La(3+) is hydrated by eight water molecules and one chloride ion, forming an inner-sphere ion complex in which the water molecules maintain angular configurations consistent with a tricapped trigonal prism configuration. This local geometry considerably disrupts the bulk solvent structure.  相似文献   

9.
The existence of the different R2+/R3+/RIV (R: rare earth) ions as well as the modifications in the structural environment around the dopant and co-dopants in CaAl2O4:Eu2+,R3+ persistent luminescence materials was studied by LIII edge X-ray Absorption Near Edge Structure (XANES) and Extended X-ray Absorption Fine Structure (EXAFS) measurements at Hamburger Synchrotronstrahlungslabor (HASYLAB) at Deutsches Elektronen-Synchrotron (DESY) (Hamburg, Germany). The measurements were carried out at 10 and 296 K for selected rare earth (co-)dopants (Eu2+; Ce3+, Nd3+, Sm3+, and Yb3+).  相似文献   

10.
Excited states of ruthenium polypyridine-type complexes have always attracted the interest of chemists. We have recently found evidence of a remarkable long-lived excited state (30 micros) for a Ru(II) complex containing a heteroditopic ligand that can be viewed as a fused phenanthroline and salophen ligand.1 To unravel this intriguing electronic property, we have used density functional theory (DFT) calculations to understand the ground-state properties of [(bpy)(2)Ru(LH(2))](2+), where LH(2) represents N,N'-bis(salicylidene)-(1,10-phenanthroline)diamine. Excited singlet and triplet states have been examined by the time-dependent DFT (TDDFT) formalism and the theoretical findings have been compared with those for the parent complex [Ru(bpy)(3)](2+). The outstanding result is the presence of excited states lower in energy than the metal-to-ligand charge-transfer states, originating from intraligand charge transfer (ILCT) from the phenolic rings to the phenanthroline part of the coordinated LH(2). The spin density distribution for the lowest triplet state provides evidence that it is in fact the lowest triplet state of the free ligand. Correlation between the energy level diagram of orbitals for the ground state and that for the (3)ILCT state clearly establishes that the ruthenium retains its formal Ru(II) oxidation state. The quenching of the luminescence and the evidence of the long-lived excited state observed for [(bpy)(2)Ru(LH(2))](2+) are discussed in the light of the computational results.  相似文献   

11.
The variations in the nonchromophoric ligands of [Ru(L)4bpy]2+ complexes are shown to result in large changes in emission band shapes, even when the emission energies are similar. These changes in band shape are systematically examined by means of the generation of empirical reorganizational energy profiles (emreps) from the observed emission spectra (Xie, P.; et al. J. Phys. Chem. A 2005, 109, 4671), where these profiles provide convenient probes of the differences in distortions from the ground-state structures of the 2,2-bipyridine (bpy) ligands (for distortion modes near 1500 cm(-1)) in the metal-to-ligand charge-transfer (MLCT) excited states for a series of complexes with the same ruthenium(II) bipyridine chromophore. The bpy ligand is nearly planar in the X-ray structures of the complexes with (L)4 = (NH3)4, triethylenetetraamine (trien), and 1,4,7,10-tetraazacyclododecane ([12]aneN4). However, for (L)4 = 5,12-rac-5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane, the X-ray crystal structure shows that the bpy ligand is twisted in the ground state (a result of methyl/bpy stereochemical repulsion) and the emrep amplitude at about 1500 cm(-1) is significantly larger for this structure than for the complex with (L)4 = 1,4,8,11-tetraazacyclotetradecane, consistent with larger reorganizational energies of the bpy distortion modes in order to form a planar (bpy(-)) moiety in the excited state of the former. The trien and [12]aneN4 complexes have very nearly the same emission energies, yet the 40% smaller vibronic sideband intensity of the latter indicates that the MLCT excited state is significantly less distorted; this smaller distortion and the related shift in the distribution of distortion mode reorganizational energy amplitudes is apparently related to the 36-fold longer lifetime for (L)4 = [12]aneN4 than for (L)4 = trien. For the majority (77%) of the [Ru(L)4bpy]2+ complexes examined, there is a systematic decrease in emrep amplitudes near 1500 cm(-1), consistent with decreasing excited-state distortion, with the excited-state energy as is expected for ground state-excited state configurational mixing in a simple two-state model. However, the complexes with L = [12]aneN4, 1,4,7,10-tetraazacyclododeca-1-ene, and (py)4 all have smaller emrep amplitudes and thus less distorted excited states than related complexes with the same emission energy. The observations are not consistent with simple two-state models and seem to require an additional distortion induced by excited state-excited state configurational mixing in most complexes. Because the stereochemical constraints of the coordinated [12]aneN4 ligand restrict tetragonal distortions around the metal, configurational mixing of the 3MLCT excited state with a triplet ligand-field excited state of Ru(II) could account for some of the variations in excited-state distortion. The large number of vibrational distortion modes and their small vibrational reorganizational energies in these complexes indicate that a very large number of relaxation channels contribute to the variations in 3MLCT lifetimes and that the metal-ligand skeletal modes are likely to contribute to some of these channels.  相似文献   

12.
The solvation structure of Cu(2+) in methanol (MeOH) and dimethyl sulfoxide (DMSO) has been determined by studying both the extended X-ray absorption fine structure (EXAFS) and the X-ray absorption near-edge structure (XANES) regions of the K-edge absorption spectra. The EXAFS technique has been found to provide a very accurate determination of the next-neighbor coordination distances, but it is inconclusive in the determination of the coordination numbers and polyhedral environment. Conversely, quantitative analysis of the XANES spectra unambiguously shows the presence of an average 5-fold coordination in both the MeOH and DMSO solution, ruling out the usually proposed octahedral Jahn-Teller distorted geometry. The EXAFS and XANES techniques provide coherent values of the Cu-O first-shell distances that are coincident in the two solvents. This investigation shows that the combined analysis of the EXAFS and XANES data allows a reliable determination of the structural properties of electrolyte solutions, which is very difficult to achieve with other experimental techniques.  相似文献   

13.
Photophysical properties such as absorption and emission spectra, lifetimes, and redox potentials of eight ruthenium complexes, Ru(LL)2(MebpyCOOH)2+, where LL represents bpy, phen, Me2bpy, Me4bpy, (MeO)2bpy, (EtO)2bpy, Cl2bpy, and NO2phen, have been measured. The acid dissociation constants of ground and excited states have been determined. The ground-state pKa values were obtained from the pH dependence of the complex absorbance changes. The excited-state pKa* values were extracted from the emission titration curve and corrected for the excited-state lifetime of both protonated and deprotonated species. The largest DeltapKa, pKa*-pKa, found for Ru(Me2bpy)2(MebpyCOOH)2+ and Ru(Me4bpy)2(MebpyCOOH)2+ of 1.7 indicate that MebpyCOOH gains most of the MLCT excited-state electron. The big negative DeltapKa found for Ru(Cl2bpy)2(MebpyCOOH)2+, -4.2, clearly indicates the metal-to-ligand charge transfer to the Cl2bpy ligands.  相似文献   

14.
X-ray absorption spectroscopy (XAS) has become a prominent tool for the element-specific analysis of transition metals at the catalytic center of metalloenzymes. In the present study the information content of X-ray spectra with respect to the nuclear geometry and, in particular, to the electronic structure of the protein-bound metal ions is explored using the manganese complex of photosystem II (PSIII) as a model system. The EXAFS range carries direct information on the number and distances of ligands as well as on the chemical type of the ligand donor function. For first-sphere ligands and second-sphere metals (in multinuclear complexes), the determination of precise distances is mostly straightforward, whereas the determination of coordination numbers clearly requires more effort. The EXAFS section starts with an exemplifying discussion of a PSII spectrum data set with focus on the coordination number problem. Subsequently, the method of linear dichroism EXAFS spectroscopy is introduced and it is shown how the EXAFS data leads to an atomic resolution model for the tetra-manganese complex of PSII. In the XANES section the following aspects are considered: (1) Alternative approaches are evaluated for determination of the metal-oxidation state by comparison with a series of model compounds. (2) The interpretation of XANES spectra in terms of molecular orbitals (MOs) is approached by comparative multiple-scattering calculations and MO calculations. (3) The underlying reasons for the oxidation-state dependence of the XANES spectra are explored. Furthermore, the potential of modern XANES theory is demonstrated by presenting first simulations of the dichroism in the XANES spectra of the PSII manganese complex.  相似文献   

15.
A [(bpy)Re(CO)3L+] complex (bpy = 2,2'-bipyridine) in which L contains a phenyl-azacrown ether that is attached to Re via an amidopyridyl linking group has been studied by steady state and nanosecond time-resolved resonance Raman spectroscopy. Vibrational band assignments have been aided by studies of model complexes in which a similar electron-donating dimethylamino group replaces the azacrown or in which an electron-donor group is absent, and by density functional theory calculations. The ground state resonance Raman spectra show nu(bpy) and nu(CO) bands of the (bpy)Re(CO)3 group when excitation is exclusively in resonance with the Re --> bpy metal-to-ligand charge-transfer (MLCT) transition, whereas L ligand bands are dominant when it is in resonance with the strong intra-ligand charge-transfer (ILCT) transition present for L ligands with electron-donor groups. Transient resonance Raman (RR) spectra obtained on single color (385 nm) pulsed excitation of the complexes in which an electron-donor group is absent show bpy*- bands of the MLCT excited state, whereas those of the complexes with electron-donor groups show both bpy*- bands and a down-shifted nu(CO) band that together are characteristic of an L-to-bpy ligand-to-ligand charge-transfer (LLCT) excited state. Samples in which a metal cation (Li+, Na+, Ca2+, Ba2+) is bound to the azacrown in the ground state show bands from both excited states, consistent with a mechanism in which the LLCT state forms after metal cation release from the MLCT state. Nanosecond time-resolved RR spectra from two-color (355 nm pump, 500 nm probe) experiments on the electron-donor systems show L-ligand bands characteristic of the LLCT state; the same bands are observed from samples in which a metal cation is bound to the azacrown in the ground state, and their time dependence is consistent with the proposed mechanism in which the rate constant for ion release in the MLCT state depends on the identity of the metal cation.  相似文献   

16.
Extended X-ray Absorption Fine Structure (EXAFS) is a powerful method of determining short range order and local structures in materials using X-ray photons produced by a synchrotron light source, or in-house by a high intensity rotating anode X-ray generator. The technique has provided valuable structural information on disordered solids (such as metal-on-support catalysts), amorphous solids, semiconductors and the environment of metals in metallo-enzymes.  相似文献   

17.
X-ray absorption spectroscopic measurements have been used to compare the electronic structures of swift heavy ions (100 MeV Si ions) irradiated and pristine Ni-Al nanocrystalline films. Results from X-ray diffraction (XRD), X-ray absorption near-edge structure (XANES) spectra at Al K-, and Ni L(2,3)-edges and extended X-ray absorption fine structure (EXAFS) at Ni K-edges are discussed. The observed XRD peaks indicate the improvement of crystalline nature and Al(111) clustering after the swift heavy ion interactions. While the XANES spectra at Ni L(2,3)-edges show decrease in the intensity of white line strength, the Al K-edge shows increase in intensity after irradiation. Above results imply that swift heavy ions induce low Z (i.e., Al) ion mass transport, changes in Al sp-Ni-d hybridization, and charge transfer. EXAFS results show that crystalline nature is improved after swift heavy irradiation which is consistent with XRD results.  相似文献   

18.
The short range order in noncrystalline iron (III) sulfide has been studied by a radial distribution analysis of the diffuse scattered intensity from X-ray diffraction. Supplementary information was obtained from the Mayn oscillation in the Extended X-ray Absorption Edge Fine Structure (EXAFS) of the Fe? K edge. The average iron-sulfur distance determined was d(FeS) = 2.285(30) Å. The data infer the presence of Fe? Fe interactions at distances between 2.7–2.9 Å.  相似文献   

19.
以钛酸正丁醇和乙二醇为原料,采用溶剂热法合成了钛乙二醇盐(TG)前躯体,在高压汞灯照射下制备出无定形TiO2。利用X射线衍射(XRD)、扫描电镜(SEM)和透射电镜(TEM)、紫外-可见吸收光谱(UV-Vis)、表面光电压谱(SPS)、N2吸附-脱附对所得材料进行了结构和性能的表征。借助X射线吸收精细结构(XAFS)对无定形TiO2的形成机制进行了分析,并通过硝基苯的还原反应考察了材料的光催化性能。结果表明:在紫外光驱动无定形TiO2的形成过程中,中心元素Ti4+的配位环境发生变化,由八面体结构转变为四面体结构;由于特殊的孔道结构使得多孔无定形TiO2显示出较好的光催化活性。  相似文献   

20.
High-pressure in situ X-ray absorption near-edge structure (XANES) and extended X-ray absorption fine structure (EXAFS) data are reported during the selective oxidation of benzyl alcohol to benzaldehyde in supercritical carbon dioxide over a Pd/Al(2)O(3) catalyst (shell impregnated). For this purpose, a continuous-flow system with a spectroscopic cell suitable for in situ X-ray absorption studies on heterogeneous catalysts up to 200 degrees C and 200 bar has been developed. Due to the high contribution of the dense fluid to the overall X-ray absorption, high stability of the process pressure is mandatory, particularly when recording EXAFS spectra. According to EXAFS and XANES results, the palladium particles were fully reduced after exposure to benzyl alcohol in scCO(2). In contrast to Pd-catalyzed liquid-phase oxidation, a higher oxygen tolerance of the catalyst was observed. Palladium was partially oxidized on the surface under typical reaction conditions (0.9 mol % benzyl alcohol/0.5 mol % O(2) in carbon dioxide), which gradually increased when the concentration of oxygen in the feed was raised. Both XANES and EXAFS data uncovered that palladium is mainly oxidized on the surface or within the outermost layers. These results are in accordance with simulations of the XANES data using the FEFF8.20 code (program for ab initio calculations on multiple scattering XAS) and EXAFS data fitting/simulation.  相似文献   

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