1H NMR and DFT study of proton exchange in heterogeneous structures of pyridine-N-oxide/HCl/DCl/H2O

Moderately narrow 1H NMR signals were observed in the solid-phase obtained from pyridine-N-oxide (PyO)...HCl solutions in acetonitrile/H2O after heterogeneous phase separation. High-resolution 1H NMR spectra are compared with those of crystalline PyO...HCl and PyO...DCl. It is concluded that partially resolved peaks in 1H NMR spectra of solids are related with heterogeneity of the spin system and the presence of different mobile H-bond clusters containing PyO, HCl, DCl and water molecules. Some part of non-bonded water or HCl molecules is captured in the cavities of crystalline samples. The attribution of the 1H NMR signals was based on the density functional theory calculation of proton magnetic screening tensor of the most expected H-bond structures in the 6-311G** basis taking into account the solvent effect by the polarized continuum model.     

Residual water suppression by indirect covariance NMR

Residual water solvent signals in 2D NMR experiments adversely affect appearance and subsequent analysis of spectra. A method for water suppression that is based on indirect covariance processing is described. It produces a symmetric spectrum with a water signal that is substantially decreased or completely absent. The method, which can be combined with other water suppression schemes, is demonstrated for 2D TOCSY, NOESY, and ROESY spectra of the protein, ubiquitin in aqueous solution.     

Application of high-performance liquid chromatography-nuclear magnetic resonance coupling to the identification of limonoids from mahogany tree (Switenia macrophylla, Meliaceae) by stopped-flow 1D and 2D NMR spectroscopy

Separation and characterization of limonoids from Switenia macrophylla (Meliaceae) by HPLC-NMR technique has been described. Analyses were carried out using reversed-phase gradient HPLC elution coupled to NMR (600 MHz) spectrometer in stopped-flow mode. Separated peaks were collected into an interface unit prior to NMR measurements, which were performed with suppression of solvent signals by shaped pulses sequences. Structure elucidation of the limonoids was attained by data obtained from 1H NMR, TOCSY, gHSQC and gHMBC spectra without conventional isolation that is usually applied in natural products studies.     

Porphyrin-based peptide receptors: syntheses and NMR analysis

The synthesis and purification of a water-soluble host compound that contains three pyridinium units and one spacer-connected benzocrown ether unit in the meso-positions of porphyrin and of its Zn(II) or Cu(II) complexes is described. Metalation leads to small (compared to the apo-derivative) changes of selectivities with different peptides, with complexation constants in water of above 10(5)M(-1). One complex containing the tripeptide Gly-Gly-Phe is analyzed in detail by COSY, HSQC, HMBC, and NOESY NMR experiments. Temperature-dependent spectra show activation energies for a intramolecular hydrogen exchange of amide protons with valence isomerization of the porphyrin ring, in accordance with the literature. Sharp signals for the spin system are only found at elevated temperature. Vicinal coupling constants within the crown ether moiety indicate stronger puckering than that reported for benzocrowns. All NMR signals of the complexed peptide are shielded, in particular those of the terminal phenylalanine unit, in line with its stacking on the porphyrin surface. A corresponding structural model, obtained by CHARMm simulation, is also in line with the observed intermolecular NOE cross peaks.     

Electronic structure and solvatochromism of merocyanines NMR spectroscopic point of view

(1)H and (13)C NMR spectra of two series of malononitrile-based merocyanines, which possess positive and negative solvatochromism have been in detail investigated in low polar chloroform and polar dimethyl sulfoxide (DMSO). Careful attribution of signals in spectra has been made with the help of two-dimensional NMR experiments (COSY, NOESY, HMBC, and HMQC). Hence, the dependence of merocyanines electronic structure on their chemical structure and solvent nature has been studied by this powerful method. It has been shown that there exists a good correlation between the calculated charges on carbon atoms of a polymethine chain and their chemical shifts in (13)C NMR spectra. The influence of solvent polarity on bond orders for dyes with positive and negative solvatochromism is also observed. The comparison of (13)C NMR spectra of merocyanines and corresponding parent ionic dyes allows to determine their sign of solvatochromism irrespectively of electronic spectra, and also to find the key atoms of chromophore whose signals in (13)C NMR spectra are most informative.     

NMR对MDI在稀溶液中水解反应机理的表征

采用核磁共振波谱(NMR)研究了二苯基甲烷二异氰酸酯(MDI)在稀溶液中的水解反应机理.将同一MDI样品分别溶解在氘代氯仿、氘代丙酮和加入少量水分的氘代二甲基亚砜溶剂(DMSO)中,进行核磁共振氢谱(1H NMR)、核磁共振碳谱(13C NMR)测试.结果显示,MDI在含水的DMSO溶剂中测得的谱图与氘代氯仿、氘代丙酮中的差别显著.对该溶液进行了13C-1H异核近程相关(HMQC)、13C-1H异核远程相关(HMBC)及碳原子级数(DEPT 135)测试,并利用经验公式对其进行了详细归属,确认了反应产物的结构.分析得知MDI在含水溶剂中迅速反应,异氰酸酯基转化为脲基和氨基基团.异氰酸酯与水反应生成氨基基团,其与异氰酸酯反应活性比水高,对位取代氨基与水的竞聚率比值为7.1,邻位为1.4,对位取代氨基活性约是邻位的5倍.     

含活泼质子水溶性化合物的核磁共振结构解析

利用核磁共振对在水溶剂易溶且含活泼质子的化合物的结构进行解析.实验中将待测样品直接溶解于二次去离子水中,并利用外标进行锁场.这样既保证了核磁共振实验的正常进行,同时避免了实验中氘代试剂对活泼质子的置换效应,为化合物中活泼质子的定位提供了直接的依据.为了保证外标锁场实验核磁共振谱图的质量,本工作采用了溶剂峰压制的核磁共振实验技术,获取了一组高质量的1D、2D谱图,并在此基础上顺利完成了对头孢米诺盐的结构确定.     

Efficient removal of unwanted signals in NMR spectra using the filter diagonalization method

It is often desirable to selectively remove corrupting or uninteresting signals from complex NMR spectra without disturbing overlapping or nearby signals. For biofluids in particular, removal of solvent and urea signals is important for retaining quantitative accuracy in NMR‐based metabonomics. This article presents a novel algorithm for efficient filtering of unwanted signals using the filter diagonalization method (FDM). Unwanted signals are modeled in the time domain using FDM. This modeled signal is subtracted from the original free induction decay. The resulting corrected signal is then processed using established workflow. The algorithm is found to be reliable and fast. By eliminating large, broad, uninteresting signals, many spectra can be subjected to fully automated absolute value processing, allowing objective preparation of spectra for pattern recognition analysis. Copyright © 2009 John Wiley & Sons, Ltd.     

NMR studies of water in polyimide films

Commercial polyimide films containing up to ～ 3 wt % water have been studied by proton, deuteron, and oxygen-17 nuclear magnetic resonance (NMR). Comparisons between NMR results and previous dielectric relaxation (DR) results for a variety of Kapton films show that there is a one-to-one correspondence between specific dielectric loss peaks and features of the ²H or ¹⁷O NMR spectra. It is concluded that water molecules, which interact only weakly with the polymer, reside in the polyimide matrix in two configurations, randomly oriented single molecules and chains of water molecules oriented perpendicular to the plane of the film. The correspondence between NMR and DR observed in water in Kapton extends to water in Upilex and to methanol and acetic acid in Kapton. © 1995 John Wiley & Sons, Inc.     

Mutual Diffusion Driven NMR: a new approach for the analysis of mixtures by spatially resolved NMR spectroscopy

We introduce a new approach for resolving the NMR spectra of mixtures that relies on the mutual diffusion of dissolved species when a concentration gradient is established within the NMR tube. This is achieved by cooling down a biphasic mixture of triethylamine and deuterated water below its mixing temperature, where a single phase is expected. Until equilibrium is reached, a gradient of concentration, from ‘pure’ triethylamine to ‘pure’ water, establishes within the tube. The amount of time required to reach this equilibrium is controlled by the mutual diffusion coefficient of both species. Moreover, a gradient of concentration exists for each additional compound dissolved in this system, related to the partition coefficient for that compound in the original biphasic state. Using slice selective experiments, it was possible to measure these concentration gradients and use them to separate signals from all the present species. We show the results acquired for a mixture composed of n‐octanol, methanol, acetonitrile and benzene and compare them with those obtained by pulse field gradient NMR. Copyright © 2016 John Wiley & Sons, Ltd.     

Discrimination of enantiomers by means of NMR spectroscopy using chiral liquid crystalline solution: application to triazole fungicides, uniconazole and diniconazole

An NMR method for discriminating among enantiomers by using a chiral liquid crystalline solution was applied to chiral triazole compounds, uniconazole (1) and diniconazole (2), which exhibit antifungal and plant growth regulating activities. These chiral compounds were dissolved in PBLG (poly-gamma-benzyl-L-glutamate)--CDCl3 chiral liquid crystalline solvent for measurements of 13C NMR. The enantiomeric separations were primarily observed in the signals of aromatic carbons owing to differences in chemical shift anisotropies. The enantiomeric excess (ee) was determined from the integral scale of the separated peaks. The resulting ee values are in fair agreement with the actual values. The extrasplittings due to residual dipolar couplings were also measured using Het2DJ spectra for 1S and R, and 2R, and the results are discussed.     

^1H NMR Study of Polyvinylalcohol Irradiated by Ultra-violet

The effect of Ultra-violet light on the structure and motion of the polyvinyl alcohol (PVA) chains was studied by IH NMR, spin-lattice relaxation and IR spectroscopy. The results indicated that with the increase of irradiation time, the intensity of the polymer hydroxyl proton peaks decreased and finally vanished, which suggested the self-condensation between the hydroxyl groups proceeded. No methyl proton peaks appeared in the spectra after irradiation shows that there is no cleavage of polymer chain. The longer the irradiation time is, the wider the proton peak of the residual water of the solvent is and it shifted toward low field. This result implies that the hydrogen bonds formed between the polymer and the residual water. The absorption peak of hydroxyl group of the polymer moves toward the lower wave number in the IR spectrum that showed the existence of the hydrogen bonds between the PVA macromolecules.     

人工合成化合物S-A的核磁共振研究

利用核磁共振技术对人工合成化合物S-A的溶液行为进行了研究, 确定该化合物在氯仿溶剂中存在分子内氢键过程, 而该交换过程对核磁共振结果的影响异常明显. 针对以上现象, 通过外加试剂和改变温度的手段对样品体系或测试环境进行了调制, 提高了核磁共振谱图的信号质量和“可读性”.     

Synthesis,optical properties,and aggregation behavior of a triad system based on perylene and oligo(p-phenylene vinylene) units

A donor-acceptor-donor triad molecule with a perylene bisimide derivative as electron acceptor, and an oligo(p-phenylene vinylene) (OPV) derivative as electron donor was synthesized (OPV-PERY-OPV). The structure of the triad was characterized by (1)H and (13)C NMR spectroscopy, size-exclusion chromatography (SEC), and MALDI-TOF spectrometry. Absorbance spectra and CD spectroscopic measurements of the triad molecule indicated the formation of aggregates in solvents such as toluene, chloroform, and tetrachloroethane, whereas it was present in the molecularly dissolved state in THF. The (1)H NMR spectra of the molecule in chloroform had, unexpectedly, four doublet peaks for the perylene protons, instead of the two doublets that is generally seen in N,N'-substituted perylene molecules. To understand the aggregation behavior and the splitting of the signals in the (1)H NMR spectra, a simple model compound was synthesized, in which the OPV units were replaced by phenyl groups (Ph-PERY-Ph). (1)H NMR spectra in CDCl(3) and tetrachloroethane again had four doublet peaks for the perylene protons, whereas in THF the perylene protons gave only a single peak. NOE and COSY spectroscopy were used to assign the peaks to their corresponding perylene protons. UV/Vis and CD spectroscopic measurements indicated that, similar to the OPV-PERY-OPV triad molecule, the model compound Ph-PERY-Ph was also present in the aggregated form in solvents such as toluene, chloroform, and tetrachloroethane, and in the molecularly dissolved state in THF. IR measurements of the model molecule in the first set of solvents indicated carbamate bond (bond;OCObond;NHbond;)-induced intermolecular hydrogen bonding, whereas in THF, the molecule was mostly present in the free form. CPK models with a dimeric structure, in which two perylene molecules are held together by intermolecular hydrogen bonding with the perylene core shifted slightly with respect to one another, could account for the optical properties and the observation of the four different peaks in the (1)H NMR spectra in polar solvent. Temperature-dependent (1)H NMR spectroscopic, UV/Vis, and CD measurements indicated that the transition from the aggregated to the molecularly dissolved state took place at higher temperatures. The electrochemical studies indicated that OPV-PERY-OPV was both p- and n-dopable, whereas Ph-PERY-Ph was only n-dopable. Cyclic voltammetry measurements of Ph-PERY-Ph in THF had two reduction peaks corresponding to the reduction of the perylene core to the monoanion and dianion, respectively. In dichloromethane, however, an additional reduction peak at lower potential was observed. This new reduction peak might arise from the hydrogen-bonded species.     

RAMPED-UP NMR: multiplexed NMR-based screening for drug discovery

The crucial step in drug discovery is the identification of a lead compound from a vast chemical library by any number of screening techniques. NMR-based screening has the advantage of directly detecting binding of a compound to the target. The spectra resulting from these screens can also be very complex and difficult to analyze, making this an inefficient process. We present here a method, RAMPED-UP NMR, (Rapid Analysis and Multiplexing of Experimentally Discriminated Uniquely Labeled Proteins using NMR) which generates simple spectra which are easy to interpret and allows several proteins to be screened simultaneously. In this method, the proteins to be screened are uniquely labeled with one amino acid type. There are several benefits derived from this unique labeling strategy: the spectra are greatly simplified, resonances that are most likely to be affected by binding are the only ones observed, and peaks that yield little or no information upon binding are eliminated, allowing the analysis of multiple proteins easily and simultaneously. We demonstrate the ability of three different proteins to be analyzed simultaneously for binding to two different ligands. This method will have significant impact in the use of NMR spectroscopy for both the lead generation and lead optimization phases of drug discovery by its ability to increase screening throughput and the ability to examine selectivity. To the best of our knowledge, this is the first time in any format that multiple proteins can be screened in one tube.     

95Mo and 17O NMR studies of aqueous molybdate solutions

Aqueous molybdate solutions with molybdenum concentrations of [Mo]=1, 0.4, and 0.2 M have been studied by NMR at pH 7-1 and in 0.3-6 M HClO4. The 95Mo NMR spectrum of isopolyanion (IPA) Mo7O24(6-) (I) at pH=5 consists of a signal at 210 ppm and two overlapping peaks at 32 and approximately 15 ppm with the intensity ratio approximately 1:4:2, and that of beta-Mo8O26(4-) (II) consists of two signals at approximately 100 and 10 ppm with the intensity ratio approximately 1:3. A broad 95Mo NMR line at around 0 ppm was observed in the pH range of IPA Mo36O112(8-) (III), and a signal of cationic oxospecies including MoO2(2+) (IV) was observed from -62 to -69 ppm. Two protonation sites of IPA I have been identified from 17O NMR spectra, which suggests binding of up to two protons. The distribution diagram, derived from the 95Mo NMR spectra, is given for [Mo]=0.4 M. The 95Mo NMR signals shift to lower frequencies with increasing number and strength of the Mo-O terminal bonds.     

High-resolution magic-angle spinning NMR for the identification of reaction products directly from thin-layer chromatography spots

We have investigated the prospect of identifying organic reaction products directly from separated thin-layer chromatography (TLC) spots with high-resolution magic-angle spinning (HRMAS) NMR. The concept is to use the TLC spots for NMR analysis so that spectra can be obtained before the reaction is worked up, but without having to elute the product from the TLC stationary phase. Thus, the separated spot is scraped from the plate, transferred to an HRMAS sample rotor, and suspended with a deuterated solvent. Herein, we describe the effects of having the stationary phase present during NMR acquisition. Using a Varian 4 mm gHX Nanoprobe and rotenone as a test compound, we found that the presence of the stationary phase during NMR acquisition resulted in (i) a large, broad 'background' signal near 4.6 ppm and (ii) a decrease in the signal-to-noise ratio due to the adsorption of the product molecules to the adsorbent. However, both effects could be adequately and conveniently eliminated. The background signal was removed by using either a CPMG pulse sequence or chemical exchange. The adsorption was avoided by using a more polar solvent system. Finally, we found that spectra with good signal-to-noise ratio and resolution could be acquired in a matter of minutes even for cases of limited product concentration. Therefore, we believe the technique has value and provides the organic chemist with another option to obtain NMR data critical for structural elucidation or verification.     

Standardization of chemical shifts of TMS and solvent signals in NMR solvents

The standard for chemical shift is dilute tetramethylsilane (TMS) in CDCl3, but many measurements are made relative to TMS in other solvents, the proton resonance of the solvent peak or relative to the lock frequency. Here, the chemical shifts of TMS and the proton and deuterium chemical shifts of the solvent signals of several solvents are measured over a wide temperature range. This allows for the use of TMS or the solvent and lock signal as a secondary reference for other NMR signals, as compared with dilute TMS in CDCl3 at a chosen temperature; 25 degrees C is chosen here. An accuracy of 0.02 ppm is achievable for dilute solutions, provided that the interaction with the solvent is not very strong. The proton chemical shift of residual water is also reported where appropriate.     

Application of the forward linear prediction on high-resolution NMR spectra in inhomogeneous fields

In homogeneous fields, the advantages of forward linear prediction (LP) for processing 2D NMR data sets have long been recognized. In this paper, the forward LP method was employed to obtain high-resolution NMR spectra in inhomogeneous fields. Intermolecular multiple-quantum coherence (iMQC) signals are caused by intermolecular dipolar interactions and can be used to obtain 1D high-resolution NMR spectra from the 2D iMQC spectra acquired in inhomogeneous fields. However, when the 2D spectra are acquired with insufficient increments to save experimental time, wiggles around strong peaks and bad resolution will occur. Extending the data set by forward LP in the indirect dimension is a good way to improve spectral resolution. Compared to normal discrete Fourier transform, the forward LP method can shorten experimental time by a factor of four or more at the same level of sensitivity and resolution.     

NMR studies of polymer solutions. II. Polyethylene

The intramolecular structure of polyethylene in solution was studied by a high-resolution nuclear magnetic resonance technique. Highly purified n-alkanes (99.5%) from C₅H₁₂ to C₃₆H₇₄ were used as its oligomers. The NMR spectra of the polyethylenes (oligomers) are very sensitive to the solvents used. The internal methylene protons of all polyethylenes of various chain length resonance at an identical frequency in carbon tetrachloride. A sharp transition in the NMR spectrum of polyethylene in α-chloronaphthalene at 35°C. was observed at n-C₁₇H₃₆, above which there exist two distinguishable NMR peaks for internal methylene protons, and below which (fewer carbons) only a single peak was seen. The NMR spectra of the internal methylene protons of the polyethylenes (oligomers) taken in benzene are very similar to those taken in pyridine. They are not as easily resolved as those NMR spectra taken in α-chloronaphthalene solutions. The effect of the size of the aromatic solvent molecule on the NMR spectra of the internal methylene protons of the polyethylenes (oligomers) in solutions was demonstrated by using aromatic solvents of various sizes, such as chlorobenzene, α-chloronaphthalene, and 9-chloronathracene. The results indicate that the formation of polymeric structure of the internal methylene groups in the polyethylene chain is very sensitive to the size of the solvent used. The interaction of the solvent with the methylene groups of the polyethylenes varies as a function of chain length; it is stronger for those low member n-alkanes and decreases gradually to an asymptotic value.