The molecular structure and infrared and Raman spectra of SCCCS

The structure, rotational constants, and vibrational spectra of SCCCS have been predicted by ab initio and density functional quantum mechanical methods. Basis sets ranging in size from double-ζ plus polarization (DZP) to triple-ζ plus double polarization, augmented with f functions (TZ2Pf) were employed. Our theoretical results are in agreement with experiments for both the geometrical structure and most of the fundamental frequencies that have been observed. An exception occurs for the SCC bending frequency υ₅, for which the 1966 and 1972 assignments of Bates and Smith appear superior to the 1966 Smith and Leroi Raman assignment, accepted in the definitive recent studies of Holland and Winnewisser. We present results for four isotopomers of SCCCS that have not yet been observed in the laboratory.     

CHIH-DFT determination of the molecular structure and infrared and ultraviolet spectra of gamma-solanine

Glycoalkaloids are toxic secondary plant metabolites found in potatoes, tomatoes, and eggplants and they are considered potential precursors of steroids for applications in bionanotechnology. In this work, we make use of a new model chemistry within density functional theory, which is called CHIH-DFT, to calculate the molecular structure of gamma-solanine, as well to predict its infrared (IR) and ultraviolet (UV-vis) spectra, and some other electronic parameters.     

Analysis of the vibronic fine structure in circularly polarized emission spectra from chiral molecular aggregates

Using a Frenkel-exciton model, the degree of circular polarization of the luminescence (g(lum)) from one-dimensional, helical aggregates of chromophoric molecules is investigated theoretically. The coupling between the electronic excitation and a local, intramolecular vibrational mode is taken into account. Analytical expressions for the fluorescence band shape and g(lum) are presented for the case of strong and weak electronic coupling between the chromophoric units. Results are compared to those from numerical calculations obtained using the three particle approximation. g(lum) for the 0-0 vibronic band is found to be independent of the relative strength of electronic coupling between chromophores and excitation-vibration coupling. It depends solely on the number of coherently coupled molecules. In contrast, for the higher vibronic transitions[g(lum)] decreases with decreasing strength of the electronic coupling. In the limit of strong electronic coupling, [g(lum)] is almost constant throughout the series of vibronic transitions but for weak coupling [g(lum)] becomes vanishingly small for all vibronic transitions except for the 0-0 transition. The results are interpreted in terms of dynamic localization of the excitation during the zero point vibrational motion in the excited state of the aggregate. It is concluded that circular polarization measurements provide an independent way to determine the coherence size and bandwidth of the lowest exciton state for chiral aggregates.     

Far infrared spectra of solid molecular nitrogen

This paper reports the observation of the far infrared absorption spectrum of a single crystal of N₂, measured over absorption paths of 4 cm (lengthwise) and 2 cm (across the crystal). The crystal chamber, with quartz windows, was immersed in a flow of cold helium gas. The spectrum from 20 to 120 cm^–1 was recorded in the liquid phase, the-phase, and over the full temperature range of the-phase (35.6–2.0 K) with a Fourier transform spectrometer. The spectral resolution, which was not instrument-limited, and the large path allowed the observation of more detailed multiphonon-transition structure in the spectrum of the-phase than has previously been observed.     

Exciton absorption spectra of optically excited linear molecular aggregates

Exciton absorption spectrum of optically excited linear molecular aggregate is theoretically investigated. The sum rules for the integral intensity of the absorption spectrum are derived. The dipole moments of the optical transitions from the one-exciton states to the two-exciton states are presented. The results obtained indicate an energy increase of the exciton transition after a single excitation of the aggregate. It accounts for the observed short-wavelength shift of the J-band of the pseudoisocyanine (PIC) J-aggregates after their optical excitation. The comparison of the experimental energy of the shift with its theoretical evaluation allows to estimate the number of monomers forming a typical PIC J-aggregate in the solutionN ?20–30.     

Theoretical model of infrared spectra of hydrogen bonds in molecular crystals and its application to interpretation of infrared spectra of 1-methylthymine

A theoretical model for vibrational interactions in the hydrogen bonds in molecular crystals with four molecules forming two centrosymmetric dimers in the unit cell is presented. The model takes into account anharmonic-type couplings between the high-frequency N-H(D) and the low-frequency N...O stretching vibrations in each hydrogen bond, resonance interactions (Davydov coupling) between equivalent hydrogen bonds in each dimer, resonance interdimer interactions within a unit cell, and Fermi resonance between the N-H(D) stretching fundamental and the first overtone of the N-H(D) in-plane bending vibrations. The vibrational Hamiltonian, selection rules, and expressions for the integral properties of an absorption spectrum are derived. The model is used for theoretical simulation of the NH stretching bands of 1-methylthymine and its ND derivative at 300 K. The effect of deuteration is successfully reproduced by our model. Infrared, far-infrared, Raman, and low-frequency Raman spectra of 1-methylthymine and its deuterated derivative have been measured. Experimental geometry and frequencies are compared with the results of density functional theory calculations performed at the B3LYP6-311++G**, B3LYP/cc-pVTZ, B3PW916-311++G**, and B3PW91/cc-pVTZ levels.     

The infrared spectra and structure of acetamide and acrylamide

The far-IR vapour phase spectra of acetamide and acrylamide are reported and several transitions in the amido “inversion” vibration are identified. The potential energy curves governing the vibration are deduced from the experimental data and are found to have a single broad minimum for both molecules, implying that the amido hydrogens are copianar with the N-CO atoms, but that the resistance to their out of plane displacement is small. The band contours found in the mid-IR spectrum of acrylamide suggest that the cis orientation of the two double bonds about the C-C single bond is favoured over the trans orientation; indeed no evidence of the latter has been found.     

Raman spectra and molecular structure of silicates

The frequencies of the strong Raman bands of silicates corresponding to the Si₂O ₅ ^2? complex anion and the SiO₂ molecule have been determined. This revealed the presence of these anions in silicates with double rings or double chains and various types of layers and the presence of SiO₂ molecules in silica modifications, feldspars, zeolites, and zircon group orthosilicates. A similarity between the Raman spectra of olivine group orthosilicates and garnet and phenacite group orthosilicates was found. This similarity was attributed to the existence of distorted tetrahedra in all of these groups, having disordered orientation in the garnet and phenacite groups.     

Theory of the absorption and circular dichroism spectra of helical molecular aggregates

A theory of the electronic circular dichroism (CD) and optical rotatory dispersion (ORD) of infinite aggregates exhibiting cylindrical symmetry is presented in which, to the authors' knowledge, for the first time vibrational structure is included explicitly. It is shown that, with the coherent exciton scattering approximation in the Green function approach, the detailed vibrational structure of the aggregate absorption. CD and ORD bands can be calculated from a knowledge of the electronic coupling and the monomer absorption line shape alone. Detailed model calculations for a single helix are made and the results are used to expose the origin of different spectral features. A good reproduction of experimental J-aggregate spectra is obtained, using the same electronic interaction to fit both absorption and CD spectral line shapes. The theory allows some prediction of aggregate geometry to be made, but it is shown that an unambiguous geometrical assignment can only be made where experimental spectra for light of different propagation directions with respect to the cylinder axis are available.     

The microwave and infrared spectra and structure of hydrothiophosphoryl difluoride

The microwave spectra of ³²SPHF₂, ³⁴SPHF₂ and ³²SPDF₂ have been analyzed. The structural parameters obtained from this analysis are: d(S-P) = 1.867±0.005Å, d(P-F) = 1.551 ±0.005Å, (P-H) = 1.392±0.005Å, ∠SPF = 117.4 ± 0.2 °, ∠SPH = 119.2±0.2 °, ∠FPF = 98.6±0.2 °. Centrifugal distortion coefficients were obtained for ³²SPHF₂. The spectra of two vibrational excited states of ³²SPHF₂ were observed. The two sets of rotational constants (A) 8336.72, 3726.70, 2807.56 MHz and (B) 8344.88, 3727.73, 2798.75 MHz were associated with the vibrational states with measured infrared frequencies 419 cm^?1 and 344 cm^?1 respectively. An analysis of the infrared spectrum is included. Dipole moment measurements yielded μ = 1.87±0.03 D for ³²SPHF₂ and μ = 1.86±0.03 D for ³²SPDF₂     

Anharmonic infrared and Raman spectra in Car-Parrinello molecular dynamics simulations

The infrared and Raman spectra of naphthalene crystal with inclusion of anharmonic effects have been calculated by adopting the generalized variational density functional perturbation theory in the framework of Car-Parrinello molecular dynamics simulations. The computational approach has been generalized for cells of arbitrary shape. The intermolecular interactions have been analyzed with and without the van der Waals corrections, showing the importance of such interactions in the naphthalene crystal to reproduce the structural, dynamical, and spectroscopic properties.     

Raman,infrared and NMR spectra and structure of divinylmethylborane

The Rarnan spectra of gaseous, liquid and solid divinylmethylborane have been recorded from 20–3500 cm^?1 and the IR spectra of gaseous and solid divinylmethylborane recorded over the range 30–3500 cm^?1. A variable temperature study of the Raman spectrum of the liquid phase has been carried out. A complete vibrational assignment is presented. In the solid phase the molecule appears to have a planar heavy atom skeleton (C_s symmetry). From analysis of the spectra of the fluid phases, the presence of a second isomer, in which one or both of the vinyl groups are twisted slightly out of the BC₃ plane (C₁ symmetry), is proposed. Variable temperature ¹³C NMR studies have been carried out. A comparison of the ¹³C chemical shift of C_β of the vinyl group with the corresponding value in other vinylboranes indicates that relatively little delocalization of the π-electron density occurs in this molecule. Low temperature (?115°C) ¹³C NMR data are consistent with a low barrier to rotation about the boron-vinyl carbon bond.     

Fourier transform infrared spectra and molecular structure of 5-methoxytryptamine,N-acetyl-5-methoxytryptamine and N-phenylsulfonamide-5-methoxytryptamine

5-Methoxytryptamine (5-MT) is a potent antioxidant and has radioprotective action. N-acetyl-5-methoxytryptamine (melatonin, NA-5-MT) is a free radical scavenger and antioxidant, which protects against oxidative damage due to a variety of toxicants. The infrared spectra of 5-MT, NA-5-MT and new synthesized N-phenylsulfonamide-5-methoxytryptamine (PS-5-MT) were investigated in the region between 4000 and 400 cm(-1). Vibrational assignments of the molecules have been made for fundamental modes on the basis of the group vibrational concept, infrared intensity and comparison with the assignments for related molecules. X-ray powder diffraction patterns of molecules were also recorded. In order to optimize the geometries of the molecules, molecular mechanic calculations (MM3) were performed. Conformational analysis of 5-MT, NA-5-MT and PS-5-MT was also established by the using PM3 method.     

The synthesis,structure and infrared spectra of pyridinium bromochromate

Pyridinium bromochromate is a recently reported reagent for oxidation. The i.r. spectra of pyridinium bromochromate has been recorded in solid phase in the region 200-2000 cm⁻¹. The vibrational assignment has been made for bromochromate ion on the basis of C_3ν. symmetry and a normal co-ordinate analysis has been attempted. The results are briefly discussed.     

Conformational structure and molecular spectra of N-ethylacetamide and N-isopropylacetamide

By analysis of infrared and NMR spectra, N-ethylacetamide, in the liquid state, in polar and nonpolar media, in a broad temperature and concentration range, was found to exist in the form of a single pair of equivalent mirror image conformers, with the conformational angle φ in the vicinity of ± 75 °. Similarly N-isopropylacetamide exists as a single conformer or conformer pair, the possible structures of which are discussed.     

High resolution infrared spectrum and molecular structure of dichloroacetylene

The infrared spectrum of dichloroacetylene, prepared by the pyrolysis of dichloromaleic anhydride at 1000°C, has been recorded at both low and high resolution. In the low resolution spectrum a number of combination bands not previously observed have been assigned, the infrared active fundamentals have been reassigned, and a center wavenumber value has been determined for the Raman activev ₁ fundamental. The high resolution spectra of a number of fundamental bands, summation bands, and one difference band for the isotopomers,³⁵CICC³⁵CI and³⁵CICC³⁷CI, have been assigned, while a more limited number of bands has been assigned for the species³⁷CICC³⁷CI and³⁵CI¹³CC³⁵CI. The resultant rotational and vibration-rotation constants have been used to obtainr _o,r _e,r _s, and partial r_s structural parameters. The most reliable bond lengths are obtained from the partialr _s treatment and are 164.105(53) pm for the C-CI bond and 119.203(79) pm for the CC bond.