Functional consequences of lipid packing stress

When two monolayers of a non-lamellar lipid are brought together to form a planar bilayer membrane, the resulting structure is under elastic stress. This stress changes the membrane’s physical properties and manifests itself in at least two biologically relevant functional aspects. First, by modifying the energetics of hydrophobic inclusions, it influences protein–lipid interactions. The immediate consequences are seen in several effects that include changes in conformational equilibrium between different functional forms of integral proteins and peptides, membrane-induced interactions between proteins, and partitioning of proteins between different membranes and between the bulk and the membrane. Secondly, by changing the energetics of spontaneous formation of non-lamellar local structures, lipid packing stress influences membrane stability and fusion.     

Synthesis and ion conductance behavior of a tetrameric alamethicin ion channel

[structure: see text] A porphyrin-tethered construct, containing four full-length alamethicin monomers, has been synthesized and characterized. The ion conductance data of the assembly in 1 M HCl display long-lived, albeit noisy, channels that appear to be voltage-independent multiples of only one conductance state. The noise in the data is consistent with the molecular modeling studies, which indicate that the side chain of glutamine 7 of alamethicin does not fit well into the narrow pore of a parallel four-helix bundle.     

A rapid and efficient algorithm for packing polypeptide chains by energy minimization

An improved algorithm for packing polypeptide chains with fixed geometry, which converges to a local energy minimum rapidly and efficiently, is described. The speed of convergence of the new algorithm is comparable to that of existing algorithms for minimizing the energies of single polypeptide chains, and it is several times greater than the speed of convergence of previous algorithms for minimizing the energy of structures consisting of several polypeptide chains. The algorithm has been used to minimize the energy of three-stranded (L -Ala)₈ β-sheets, three-stranded (L -Val)₆ β-sheets, and five-stranded (L -Ile)₆ β-sheets, starting from regular structures found previously; of the three-stranded regular and truncated (Gly-L -Pro-L -Pro)₄ structures used in earlier work to model collagen; and of the stacked β-sheet (L -Ala-GLy)₆ structures used to model silk. The antiparallel L -Ala β-sheet, and Gly-Pro-Pro triple helices, and the silk II structure remained nearly regular after energy minimization, but by contrast with results from earlier computations the other structures became significantly irregular. © 1994 by John Wiley & Sons, Inc.     

Mechanochromism of piroxicam accompanied by intermolecular proton transfer probed by spectroscopic methods and solid-phase changes

Structural and solid-state changes of piroxicam in its crystalline form under mechanical stress were investigated using cryogenic grinding, powder X-ray diffractometry, diffuse-reflectance solid-state ultraviolet-visible spectroscopy, variable-temperature solid-state (13)C nuclear magnetic resonance spectroscopy, and solid-state diffuse-reflectance infrared Fourier transform spectroscopy. Crystalline piroxicam anhydrate exists as colorless single crystals irrespective of the polymorphic form and contains neutral piroxicam molecules. Under mechanical stress, these crystals become yellow amorphous piroxicam, which has a strong propensity to recrystallize to a colorless crystalline phase. The yellow color of amorphous piroxicam is attributed to charged piroxicam molecules. Variable-temperature solid-state (13)C NMR spectroscopy indicates that most of the amorphous piroxicam consists of neutral piroxicam molecules; the charged species comprise only about 8% of the amorphous phase. This ability to quantify the fractions of charged and neutral molecules of piroxicam in the amorphous phase highlights the unique capability of solid-state NMR to quantify mixtures in the absence of standards. Other compounds of piroxicam, which are yellow, are known to contain zwitterionic piroxicam molecules. The present work describes a system in which proton transfer accompanies both solid-state disorder and a change in color induced by mechanical stress, a phenomenon which may be termed mechanochromism of piroxicam.     

Directed aggregation and fusion of lipid vesicles induced by DNA-surfactants

We investigated DNA-directed aggregation of vesicles using DNA-surfactants. Following tethering of single-stranded DNA oligonucleotides to vesicles using DNA-surfactant, the tethered vesicles were assembled with other vesicles bearing complementary strands. The vesicle aggregation was strongly affected by the salt concentration and by temperature according to the characteristics of DNA hybridization. Restriction enzyme, which can hydrolyze the double-stranded DNA used in the present study, dissociated the vesicle aggregates. Exploration using fluorescently labeled vesicles suggested that the DNA-directed vesicle aggregation took place in a sequence-specific manner through DNA-duplex formation. Interestingly, the DNA-directed aggregation using short DNA-surfactant induced the fusion of vesicles to produce giant vesicles, resulting in an enzymatic reaction in the giant vesicle.     

Long-lived excited electronic states of the dichloroethylene cation isomers probed by charge exchange ionization

Charge exchange technique has been used to detect the presence of long-lived excited electronic states of trans-, cis-, and 1,1-C₂H₂Cl ₂ ^+· . The \(\tilde B\) states of the three cations which are formed by removal of an electron from an in-plane chlorine nonbonding orbital of the corresponding neutrals have been found to have long lifetimes (tens of microseconds or longer). Whether the à states formed by removal of an electron from the other in-plane chlorine nonbonding orbitals are long-lived also can not be determined by the present experiments. Cations in the excited electronic states above the \(\tilde B\) states were not detected because of their prompt dissociation following intramolecular relaxation or radiative decay.     

Interactions of ibuprofen with hybrid lipid bilayers probed by complementary surface-enhanced vibrational spectroscopies

The incorporation of small molecules into lipid bilayers is a process of biological importance and clinical relevance that can change the material properties of cell membranes and cause deleterious side effects for certain drugs. Here we report the direct observation, using surface-enhanced Raman and IR spectroscopies (SERS, SEIRA), of the insertion of ibuprofen molecules into hybrid lipid bilayers. The alkanethiol-phospholipid hybrid bilayers were formed onto gold nanoshells by self-assembly, where the underlying nanoshell substrates provided the necessary enhancements for SERS and SEIRA. The spectroscopic data reveal specific interactions between ibuprofen and phospholipid moieties and indicate that the overall hydrophobicity of ibuprofen plays an important role in its intercalation in these membrane mimics.     

Investigation on critical aggregation concentration of carbosiloxane dendrimer in dilute solution probed by rhodamine B

We propose a novel method for probing aggregation of dendrimers by investigating the isomerization equilibrium between pink zwitterionic form (Z-form) and colorless lactonic form (L-form) of rhodamine B (RhB) molecules in dilute solution. Investigation using carbosiloxane dendrimers (CSiO-D) with different generations as the model dendrimer molecules showed that the equilibrium constant of isomerization of RhB increased dramatically at the critical aggregation concentration (CAC) of dendrimers. The redox potential differences between isomers of RhB indicated that aggregation of CSiO-D accelerated the isomerization of RhB and stabilized the L-form of RhB. The data on Gibbs energy and electrolytic conductivity provided further evidence for confirming the CAC of dendrimers in dilute solution and showed good agreement with our other experimental results. The proposed method is effective in estimating the CAC of dendrimers in dilute solution.     

Monitoring lipid membrane translocation of sodium dodecyl sulfate by isothermal titration calorimetry

We establish high-sensitivity isothermal titration calorimetry (ITC) as a fast, reliable, and versatile tool for assessing membrane translocation of charged compounds. A combination of ITC uptake and release titrations can discriminate between the two extreme cases of half-sided binding and complete transbilayer equilibration on the experimental time scale. To this end, we derive a general fit function for both assays that allows for incorporation of different membrane partitioning models. Electrostatic effects are taken into account with the aid of Gouy-Chapman theory, thus rendering uptake and release experiments amenable to the investigation of charged solutes. This is exemplified for the flip-flop of the anionic detergent sodium dodecyl sulfate (SDS) across the membranes of 100-nm-diameter unilamellar vesicles composed of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) in aqueous solution (10 mM phosphate buffer, 154 mM NaCl, pH 7.4). If repulsive electrostatic forces are accounted for adequately, SDS binding to POPC membranes can be evaluated on the basis of ideal mixing in all phases. At 25 degrees C, the intrinsic partition coefficient between the interfacial aqueous phase and the membrane amounts to 3.5 x 10(6); however, detergent flip-flop is negligibly slow under these conditions. Raising the temperature to 65 degrees C lowers the intrinsic partition coefficient to 1.4 x 10(6) but enables rapid transbilayer distribution of the detergent and, therefore, binding to or desorption from both membrane leaflets. Thus, combining a surface partition equilibrium with simple electrostatic theory appears highly useful in monitoring transmembrane movement of ionic compounds by ITC, thereby eliminating the need for specific reporter groups.     

Dynamical flexibility and proton transfer in the arginase active site probed by ab initio molecular dynamics

We have used ab initio molecular dynamics (AIMD) to investigate the dynamical flexibility of the bridged binuclear structural motif in the active site of arginase. Dynamical transformations play a crucial role in catalysis. We have provided direct insight into the motions of the first-shell ligands with emphasis on the chelating and bridging carboxylates. In the case of the terminal Asp234 residue we observe changes in the binding mode (carboxylate shifts). AIMD dynamics of sufficient duration has allowed us to observe proton transfer from the bridging nucleophile to the catalytically essential Asp 128 residue and to map the underlying free energy surface in terms of simple reaction coordinates, such as the oxygen-oxygen distance Ro-o and the asymmetric stretch delta. This has provided valuable insight into the nature of the last step of the catalytic cycle. In addition, constrained molecular dynamics permitted us to compare the deprotonation free energy of the bridging nucleophile in the case of native versus metal-depleted arginase.     

Environment-controlled interchromophore charge transfer transitions in dipeptides probed by UV Absorption and electronic circular dichroism spectroscopy

Charge transfer (CT) transitions between the C-terminal carboxylate and peptide group have been investigated for alanyl-X and X-alanine dipeptides by far-UV absorption and electronic circular dichroism (ECD) spectroscopy (where X represents different amino acid residues). The spectra used in the present study were obtained by subtracting the spectrum of the cationic species from that of the corresponding zwitterionic peptide spectrum. These spectra displayed three bands, e.g., band I between 44 and 50 kK (kK = 10(3) cm(-1)), band II at 53 kK, and band III above 55 kK, which were, respectively, assigned to a n(COO-) --> pi* CT transition, a pi(COO-) --> pi* CT transition, and a carboxylate pi --> pi* (NV1) transition, respectively By comparison of the intensity, bandwidth, and wavenumber position of band I of some of the investigated dipeptides, we found that positive charges on the N-terminal side chain (for X = K), and to a minor extent also the N-terminal proton, reduce its intensity. This can be understood in terms of attractive Coulomb interactions that stabilize the ground state over the charge transfer state. For alanylphenylalanine, we assigned band I to a n(COO-) --> pi* CT transition into the aromatic side chain, indicating that aromatic side chains interact electronically with the backbone. We also performed ECD measurements at different pH values (pH 1-6) for a selected subset of XA and AX peptides. By subtraction of the pH 1 spectrum from that observed at pH 6, the ECD spectrum of the CT transition was obtained. A titration curve of their spectra reveals a substantial dependence on the protonation state of the aspartic acid side chain of AD, which is absent in DA and AE. This most likely reflects a conformational transition of the C-terminus into a less extended state, though the involvement of a side chain --> peptide CT transition cannot be completely ruled out.     

Modeling the interface between islet amyloid polypeptide and insulin-based aggregation inhibitors: correlation to aggregation kinetics and membrane damage

Human islet amyloid polypeptide (hIAPP) forms cytotoxic fibrils in type-2 diabetes and insulin is known to inhibit formation of these aggregates. In this study, a series of insulin-based inhibitors were synthesized and assessed for their ability to slow aggregation and impact hIAPP-induced membrane damage. Computational studies were employed to examine the underlying mechanism of inhibition. Overall, all compounds were able to slow aggregation at sufficiently high concentrations (10× molar excess); however, only two peptides showed any inhibitory capability at the 1:1 molar ratio (EALYLV and VEALYLV). The results of density functional calculations suggest this is due to the strength of a salt bridge formed with the Arg11 side chain of hIAPP and the inhibitors' ability to span from the Arg11 to past the Phe15 residue of hIAPP, blocking one of the principal amyloidogenic regions of the molecule. Unexpectedly, slowing fibrillogenesis actually increased damage to lipid membranes, suggesting that the aggregation process itself, rather than the fibrilized peptide, may be the cause of cytotoxicity in vivo.     

Effect of charge inhomogeneity and mobility on colloid aggregation

The aggregation of inhomogeneously charged colloids with the same average charge is analyzed using Monte Carlo simulations. We find aggregation of colloids for sizes in the range 10-200 nm, which is similar to the range in which aggregation is observed in several experiments. The attraction arises from the strongly correlated electrostatic interactions associated with the increase in the counterion density in the region between the particles; this effect is enhanced by the discreteness and mobility of the surface charges. Larger colloids attract more strongly when their surface charges are discrete. We study the aggregation as functions of the surface charge density, counterion valence, and volume fraction.     

电位质子滴定与NEXAFS和XPS表征功能化多壁碳纳米管比较(英文)

Since the discovery of carbon nanotubes (CNT), this material has been recognized as an attractive catalyst support. CNT must be functionalized before use as a catalyst support and typically this involves oxidation. However, the functional group distribution on the CNT is very complex mixture of groups and varies with oxidation agent used. Here a simple acid-base titration is introduced to characterize the oxygen functionalized CNT. By comparing characterization with near-edge X-ray absorption fine structure (NEXAFS) and X-ray photoelectron spectroscopy (XPS) for both at the C and O K-edges, it can be demonstrated that potentiometric proton titration can be a fast and quantitative analysis for Brnsted acid functional groups on CNT.     

Surface charge properties of oxides and hydroxides formed on metal substrates determined by contact angle titration

Interactions of naturally oxidized or chemically treated flat metal surfaces with the environment, such as the atmosphere or a polymer coating are extremely important for the practical applications. These interactions are governed by the surface chemistry defined by the number and ionization constants of the surface hydroxyl groups along with the surface charge properties. In the present study, a robust methodology was developed to characterize the chemistry of flat surfaces using the contact angle titration procedure. The point of zero charge on the surface of a series of metal oxides and hydroxides, determined using the proposed methodology, showed consistent correlation with the corresponding values for oxides and hydroxides studied in the powder form. A new model based on the concept of polar and disperse components of the work of adhesion and a simplified version of the triple layer was proposed to explain the evolution of the contact angle with pH. This model covers the wide range of pH and ionic strengths of the test solutions and directly accounts for the adsorption process and speciation on the surface. The adhesion of polymer coatings to the chemically treated metal substrates was also explored. It was shown that there is a linear correlation between the point of zero charge on the surface and the strength of adhesion determined by means of the feathering test. This finding emphasizes the significance of the surface charge properties for predicting the adhesion of coatings.     

Crystal packing and charge transport in single crystals of chrysene derivatives: Impact of halogenation

Crystal packing has strong influence on the charge mobility for organic semiconductors, so the elucidation of the structure-property relationship is important for the design of high-performance organic semiconductors. Halogen substitution has been shown to be a promising strategy to alter the crystal structure without significantly changing the molecular size in previous reports. This paper studies the influence of halogenation on charge transport in single crystals of chrysene derivatives from a theoretical standpoint. The structure-property relationship is first rationalized by investigating the reorganization energy and electronic coupling from the density functional theory calculations. Based on the Marcus charge transfer theory, the mobilities in the molecular monolayer are then calculated with the random walk simulation technique from which the angular resolution anisotropic mobilities are obtained on the fly. It is shown that the mobilities become much larger for holes than those for electrons in the molecular monolayer when the halogenation occurs. Furthermore, the intra-layer charge transport is little influenced by the inter-layer pathways in the single crystals of the halogenated chrysene derivatives, while the opposite case is shown for the crystal of the nonhalogenated chrysene derivative. The reason for the variations of charge transport is discussed theoretically.     

Electrostatics and aggregation: how charge can turn a crystal into a gel

The crystallization of proteins or colloids is often hindered by the appearance of aggregates of low fractal dimension called gels. Here we study the effect of electrostatics upon crystal and gel formation using an analytic model of hard spheres bearing point charges and short range attractive interactions. We find that the chief electrostatic free energy cost of forming assemblies comes from the entropic loss of counterions that render assemblies charge-neutral. Because there exists more accessible volume for these counterions around an open gel than a dense crystal, there exists an electrostatic entropic driving force favoring the gel over the crystal. This driving force increases with increasing sphere charge, but can be counteracted by increasing counterion concentration. We show that these effects cannot be fully captured by pairwise-additive macroion interactions of the kind often used in simulations, and we show where on the phase diagram to go in order to suppress gel formation.     

Adsorption of a cationic dye molecule on polystyrene microspheres in colloids: effect of surface charge and composition probed by second harmonic generation

Nonlinear optical probe, second harmonic generation (SHG), of the adsorption of the dye molecule malachite green (MG), in cationic form at pH < or = 5, on polystyrene microspheres in aqueous solution is used to study the effect of surface charge and composition on molecular adsorption. Three types of polystyrene microspheres with different surface composition are investigated: (1) a sulfate terminated, anionic surface, (2) a neutral surface without any functional group termination, and (3) an amine terminated, cationic surface. The cationic dye was found to adsorb at all three surfaces, regardless of surface charge. The adsorption free energies, DeltaG's, measured for the three surfaces are -12.67, -12.39, and -10.46 kcal/mol, respectively, with the trend as expected from the charge interactions. The adsorption density on the anionic surface, where attractive charge-charge interaction dominates, is determined by the surface negative charge density. The adsorption densities on the neutral and cationic surfaces are on the other hand higher, perhaps as a result of a balance between minimizing repulsive charge interaction and maximizing attractive molecule-substrate and intermolecular interactions. The relative strength of the SH intensity per molecule, in combination of a model calculation, reveals that the C(2) axis of the MG molecule is nearly perpendicular to the surface on the anionic surface and tilts away from the surface norm when the surface is neutral and further away when cationic. Changing the pH of the solution may alter the surface charge and subsequently affect the adsorption configuration and SH intensity.