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1.
The small peptide derived from proline, N‐acetyl‐prolinamide (Ac‐Pro‐NH2), has been investigated using a combination of Fourier transform microwave spectroscopy with laser ablation. Spectral signatures belonging to only one conformer have been detected in the supersonic expansion. Rotational constants and nuclear quadrupole coupling constants of the two 14N nuclei have been used in the characterization of a γ‐turn structure in the gas phase, which is stabilized by a CO???HN intramolecular hydrogen bond closing a seven‐membered ring. A methyl group internal rotation barrier of 354 cm?1 has been determined from the analysis of the A–E splittings.  相似文献   

2.
The present work contributes to a combined theoretical and experimental investigation on oxyclozanide. The experimental vibrational spectra were characterized by Fourier transform infrared (4000-400 cm?1), Fourier transform Raman (4000-400 cm?1), 1H and 13C NMR were recorded in Deuterated methanol, UV–Vis (200–400 nm) techniques and theoretical optimized molecular geometry, harmonic vibrational spectra, magnetic spectra, and electronic spectra was calculated by Density Functional Theory (DFT) employed with B3LYP/6-311++G(d,p) basis set and compared with experimental data. The highest occupied molecular orbital - lowest unoccupied molecular orbital (HOMO-LUMO) energy was also calculated for the titled compound. The intermolecular interactions have been addressed through Hirshfeld surface analysis. In addition, Natural bond orbital (NBO) analyses of the title compound were performed to evaluate the suitable reactivity site and chemical stabilization behavior, Mulliken atomic charge distribution, and molecular electrostatic potential energy surfaces, were calculated to get a better insight into the structure of oxyclozanide. The experimental and theoretical findings suggest an excellent correlation to confirm the structure of oxyclozanide.  相似文献   

3.
The structural features of the 1H‐imidazo[4,5‐c]pyridine (ICPY) tautomers and homodimers of the most stable tautomers have been studied by quantum chemical methods. FTIR and Raman spectra of the ICPY were recorded in the range of 4000–60 cm?1 and 3500–5 cm?1. The predominant tautomer among four possible isomers of ICPY were determined. The optimized geometries and vibrational frequencies of possible ICPY tautomers and dimers were computed by B3LYP/DFT method with 6‐311++G(d,p) and 6‐31G(d) basis sets. All vibrational frequencies assigned in detail with the help of total energy distribution (TED) and isotopic shifts. ICPY dimeric forms were also characterized according to their hydrogen bonding interactions, and it has been found that the most stable ICPY homodimer establishes moderate strong N ? H …N type hydrogen bond. 1H NMR, 13C NMR, and 15N NMR properties have been calculated for all tautomeric forms using the gauge independent atomic orbital (GIAO) method. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011  相似文献   

4.
The intramolecular hydrogen bond, molecular structure and vibrational frequencies of tetra-acetylethane have been investigated by means of high-level density functional theory (DFT) methods with most popular basis sets. Fourier transform infrared and Fourier transform Raman spectra of this compound and its deuterated analogue were recorded in the regions 400-4000 cm(-1) and 40-4000 cm(-1), respectively. The calculated geometrical parameters of tetra-acetylethane were compared to the experimental results of this compound and its parent molecule (acetylacetone), obtained from X-ray diffraction. The O...O distance in tetra-acetylethane, about 2.424A, suggests that the hydrogen bond in this compound is stronger than acetylacetone. This conclusion is well supported by the NMR proton chemical shifts and O-H stretching mode at 2626 cm(-1). Furthermore, the calculated hydrogen bond energy in the title compound is 17.22 kcal/mol, which is greater than the acetylacetone value. On the other hand, the results of theoretical calculations show that the bulky substitution in alpha-position of acetylacetone results in an increase of the conjugation of pi electrons in the chelate ring. Finally, we applied the atoms in molecules (AIM) theory and natural bond orbital method (NBO) for detail analyzing the hydrogen bond in tetra-acetylethane and acetylacetone. These results are in agreement with the vibrational spectra interpretation and quantum chemical calculation results. Also, the conformations of methyl groups with respect to the plane of the molecule and with respect to each other were investigated.  相似文献   

5.
The polymorphic crystalline structure and melting behavior of biodegradable poly(butylene adipate) (PBA) samples melt‐crystallized at different crystallization temperatures were studied by differential scanning calorimetry (DSC) and fourier transform infrared (FTIR) spectroscopy. The crystalline structure and melting behavior of PBA were found to be greatly dependent on the crystallization temperature. By comparison of the FTIR spectra and the corresponding second derivatives between the α‐ and β‐crystal of PBA, the spectral differences were identified for the IR bands appeared at 1485, 1271, 1183, and 930 cm?1 and the possible reasons were presented. Especially, the 930 cm?1 band was found to be a characteristic band for the β‐crystal. Combining the DSC data with the analysis of normalized intensity changes of several main IR bands during the melting process, the melting behaviors of the α‐ and β‐crystal were clarified in detail. It is demonstrated by the in situ IR measurement that the β‐crystalline phase would transform into the α‐crystalline phase during the melting process, and the solid–solid phase transition from the β‐ to α‐crystal was well elucidated by comparing the intensity changes of the 1170 and 930 cm?1 bands. The dependence of the β‐ to α‐crystal phase transition on the heating rate was revealed by monitoring the intensity ratio of the 909 and 930 cm?1 band. It was suggested that at the heating rate of 0.5 or 1 °C/min, the percent amount of the transformed α‐crystal from the β‐crystal was much higher than that at the higher heating rate. The β‐crystal transforms into the α‐crystal incompletely at the higher heating rate because of the less time available for the phase transition. In addition, the β‐ to α‐crystal phase transition was further confirmed by the IR band shifts during the melting process. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 47: 1997–2007, 2009  相似文献   

6.
The structures of singly and doubly (and for Mg, triply) hydrated group 2 metal dications bound to deprotonated uracil were explored in the gas phase using infrared multiple photon dissociation spectroscopy in the mid‐infrared region (1000–1900 cm?1) and the O–H/N–H stretching region (2700–3800 cm?1) in a Fourier transform ion cyclotron resonance mass spectrometer. The infrared multiple photon dissociation spectra were then compared with the computed IR spectra for various isomers. Calculations were performed using B3LYP with the 6‐31 + G(d,p) basis set for all atoms except Ba2+ and Sr2+, for which the LANL2DZ or the def2‐TZVPP basis sets with relativistic core potentials were used. Atoms‐in‐molecules analysis was conducted for all lowest energy structures. The lowest energy isomers in all cases are those in which the one uracil is deprotonated at the N3 position, and the metal is coordinated to the N3 and O4 of uracil. Regardless of the degree of solvation, all water molecules are bound to the metal ion and participate in a hydrogen bond with a carbonyl of the uracil moiety. Copyright © 2016 John Wiley & Sons, Ltd.  相似文献   

7.
Conformational study of trifluoroacetylacetone was carried out using the HF, B3LYP, and MP2 methods with the 6‐31G(d, p) and 6‐311++G(d, p) basis sets. All of the results show that the chelated enol structures (E11 and E31) have extra stability with respect to the other forms and one of them (E11) is global minimum. The energy gap between the chelated forms is in the range 0.7–5.9 kJ mol?1. Theoretical calculations show that this compound has an asymmetric double minimum potential energy surface which is in contrast with the electron diffraction result. Moreover, the computational results predict that due to the withdrawing effect of CF3 group, hydrogen bond in trifluoroacetylacetone is weaker than the acetylacetone. Because of the more stability of E11, it is expected that the hydrogen bond energy in E11 is greater than the E31, but at all of the computational levels with most extended basis set the converse results were observed. These results clearly show that the hydrogen bond is not a superior parameter in conformational preference and the contribution of resonance is probably greater than the hydrogen bond. Finally, the analysis of this system by quantum theory of atoms in molecules and natural bond orbital methods fairly support the ab initio results. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010  相似文献   

8.
The Fourier transform infrared and Raman spectra of thiourea have been studied in the region 4000–400 and 4000–10 cm?1, respectively. A complete vibrational analysis on the molecular structure of thiourea has been made on the basis of C2υ point group symmetry. The validity of the vibrational assignments on the structure of thiourea is supported by evaluating the molecular constants and the potential energy distribution.  相似文献   

9.
The vibrational frequency of free OH? ions, which cannot be directly measured, has been claimed to be 3700 cm?1. In solid hydroxides the OH stretching frequency has been found in the range from 3690 to 3100 cm?1. The decrease of the vibrational frequency has been interpreted to be caused by hydrogen bridges or the increase of the metal oxygen bond strength. We suggest an alternative explanation. The vibrational frequency of unperturbed OH? ions is 3570 ± 10 cm?1. In ionic hydroxides this frequency is increased due to repulsion effects of the lattice or decreased if hydrogen bonds are present, to a large extent (up to 400 cm?1) in the case of common OH?….X bridges and only up to 70 cm?1 in the case of XH….OH? bonds.  相似文献   

10.
We have compared the performance of widely used hybrid functionals for calculating the bond lengths and harmonic vibrational frequencies of AnF6 (An=U, Np, and Pu) and UF6?nCln (n=1–6) molecules using “small‐core” relativistic effective core potentials and extended basis sets. The calculated spectroscopic constants compare favorably with experimental data for the bond lengths (average error ≤ 0.01 Å) and vibrational frequencies (average error ≤ 7 cm?1) of the AnF6 molecules. The experimental vibrational frequencies of the stretching modes were available for most of the UF6?nCln (n=1–6) molecules. The calculated vibrational frequencies are in good agreement with the experimental data to within 4.6 cm?1 and 7.6 cm?1 for selected Becke1 and Lee, Yang, Parr (B1LYP), and Becke3 and Perdew, Wang (B3PW91) functionals, respectively. We conclude that one can predict reliable geometries and vibrational frequencies for the unknown related systems using hybrid density functional calculations with the RECPs. The geometries and vibrational frequencies of the UF6?nCln (n=1–6) molecules that have not been determined experimentally are also presented and discussed. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 2010–2017, 2001  相似文献   

11.
The infrared spectrum of ether was studied using Fourier transform infrared spectroscopy in conjunction with the density functional theory (DFT). The optimized structures and vibrational frequencies of the ether·(H2O) n (n = 1–3) complexes were obtained at B3LYP/6-31G(d) theory levels. Compared to those of free-form ether, the C–O stretching vibrational frequencies of the ether–water complexes are found to shift to red by up to 39 cm?1 with an increase in the C–O length of 0.016 Å. Meanwhile, the frequency of the O–H stretching modes of water in the complexes appears significantly redshifted to a varying degree. The DFT calculations suggest that these shifts are caused by the hydrogen bonding between ether and water.  相似文献   

12.
Matrix‐assisted laser desorption/ionization in‐source decay (MALDI‐ISD) induces N–Cα bond cleavage via hydrogen transfer from the matrix to the peptide backbone, which produces a c′/z? fragment pair. Subsequently, the z? generates z′ and [z + matrix] fragments via further radical reactions because of the low stability of the z?. In the present study, we investigated MALDI‐ISD of a cyclic peptide. The N–Cα bond cleavage in the cyclic peptide by MALDI‐ISD produced the hydrogen‐abundant peptide radical [M + 2H]+? with a radical site on the α‐carbon atom, which then reacted with the matrix to give [M + 3H]+ and [M + H + matrix]+. For 1,5‐diaminonaphthalene (1,5‐DAN) adducts with z fragments, post‐source decay of [M + H + 1,5‐DAN]+ generated from the cyclic peptide showed predominant loss of an amino acid with 1,5‐DAN. Additionally, MALDI‐ISD with Fourier transform‐ion cyclotron resonance mass spectrometry allowed for the detection of both [M + 3H]+ and [M + H]+ with two 13C atoms. These results strongly suggested that [M + 3H]+ and [M + H + 1,5‐DAN]+ were formed by N–Cα bond cleavage with further radical reactions. As a consequence, the cleavage efficiency of the N–Cα bond during MALDI‐ISD could be estimated by the ratio of the intensity of [M + H]+ and [M + 3H]+ in the Fourier transform‐ion cyclotron resonance spectrum. Because the reduction efficiency of a matrix for the cyclic peptide cyclo(Arg‐Gly‐Asp‐D‐Phe‐Val) was correlated to its tendency to cleave the N–Cα bond in linear peptides, the present method could allow the evaluation of the efficiency of N–Cα bond cleavage for MALDI matrix development. Copyright © 2016 John Wiley & Sons, Ltd.  相似文献   

13.
Single crystals of copper tartrate trihydrate (CTT) with orthorhombic structure were grown in silica gel medium, by the controlled chemical reaction method. The Fourier transform infrared spectrum in the range 400–4,000 cm?1 were recorded and the vibrational bands corresponding to different functional groups are assigned. Thermal stability of the grown crystals was investigated by differential thermal analysis, thermogravimetric and differential scanning calorimetry studies. The presence of water molecules and the dehydration stages are discussed. The dielectric studies on CTT crystals were performed in the frequency range of 100–5 MHz at three different temperatures which indicated that the dielectric constant decreases with frequency and increases with temperature. The ac conductivity is found to increase with frequency and temperature. The vibrating sample magnetometer studies on these crystals confirmed the diamagnetic nature of the CTT crystals.  相似文献   

14.
The rate constants for the OH + α‐pinene and OH + β‐pinene reactions have been measured in 5 Torr of He using discharge‐flow systems coupled with resonance fluorescence and laser‐induced fluorescence detection of the OH radical. At room temperature, the measured effective bimolecular rate constant for the OH + α‐pinene reaction was (6.08 ± 0.24) × 10?11 cm3 molecule?1 s?1. These results are in excellent agreement with previous absolute measurements of this rate constant, but are approximately 13% greater than the value currently recommended for atmospheric modeling. The measured effective bimolecular rate constant for the OH + β‐pinene reaction at room temperature was (7.72 ± 0.44) × 10?11 cm3 molecule?1 s?1, in excellent agreement with previous measurements and current recommendations. Above 300 K, the effective bimolecular rate constants for these reactions display a negative temperature dependence suggesting that OH addition dominates the reaction mechanisms under these conditions. This negative temperature dependence is larger than that observed at higher pressures. The measured rate constants for the OH + α‐pinene and OH + β‐pinene reactions are in good agreement with established reactivity trends relating the rate constant for OH + alkene reactions with the ionization potential of the alkene when ab initio calculated energies for the highest occupied molecular orbital are used as surrogates for the ionization potentials for α‐ and β‐pinene. © 2002 Wiley Periodicals, Inc. Int J Chem Kinet 34: 300–308, 2002  相似文献   

15.
Cyclodextrin nanosponges (CDNS) are cross-linked polymers with remarkable inclusion/release properties. CDNS show swelling capability and a hydrophilicity/hydrophobicity balance that can be dramatically modified by the type and quantity of cross-linking agents. Here, we focus our attention on samples of β-cyclodextrin nanosponges (β-CDNS) obtained by reacting β-cyclodextrin (β-CD) with the cross-linking agent carbonyldiimidazole at different β-CD:cross-linking agent molar ratio. The vibrational properties of CDNS thus synthesized have been investigated by Fourier transform infrared spectroscopy in attenuated total reflectance geometry and Raman spectroscopy in the dry state at room temperature. The quantitative analysis of the O–H stretching region (3,000–3,800 cm?1) allowed us to obtain structural information on the role played by primary and secondary OH groups in the hydrogen bond network of the polymer. Also, the contribution of interstitial and intracavity crystallization water molecules is reported. Solid-state NMR spectroscopy is used to study the molecular mobility of the polymer by measuring the 1H spin–lattice relaxation time in the rotating frame (T). The T values obtained for the polymer β-CDNS are compared with free β-CD. The observed relaxation parameters point out that the ester formation occurs mainly at the primary OH groups of CDs, also supporting the interpretation of vibrational spectra.  相似文献   

16.
《Solid State Sciences》2012,14(4):476-487
The Fourier transform infrared (FT-IR) and Fourier transform Raman (FTR) spectra of 4-amino-3(4-chlorophenyl) butanoic acid were recorded in the regions 4000–400 cm−1 and 4000–100 cm−1, respectively, in the solid phase. Molecular electronic energy, geometrical structure, harmonic vibrational spectra, infrared intensities and Raman scattering activities, highest occupied molecular orbital, lowest unoccupied molecular orbital energy, energy gaps and thermodynamical properties such as zero-point vibrational energies, rotational constants, entropies and dipole moment were computed at the Hartree–Fock/6-31G(d,p) and three parameter hybrid functional Lee–Yang–Parr/6-31G(d,p) levels of theory. The vibrational studies were interpreted in terms of potential energy distribution (PED). The results were compared with experimental values with the help of scaling procedures. Most of the modes have wave numbers in the expected range and are in good agreement with computed values. The first order hyperpolarizability (βtotal) of this molecular system and related properties (β, μ, 〈α〉 and Δα) are calculated using HF/6-31G(d,p) and B3LYP/6-31G(d,p) methods based on the finite-field approach. Stability of the molecule arising from hyperconjugative interactions, charge delocalization and intramolecular hydrogen bond-like weak interaction has been analyzed using natural bond orbital (NBO) analysis by using B3LYP/6-31G(d,p) method. The results show that electron density (ED) in the σ1 and π1 antibonding orbitals and second-order delocalization energies E(2) confirm the occurrence of intramolecular charge transfer (ICT) within the molecule.  相似文献   

17.
Germanium silicide diamondoids are used to determine electronic, structural, and vibrational properties of GeSi superlattice nanocrystals and bulk as their building block limit. Density functional theory at the generalized gradient approximation level of Perdew, Burke, and Ernzerhof (PBE) with 6-31G(d) basis including polarization functions is used to investigate the electronic structure of these diamondoids. The investigated molecules and diamondoids range from GeSiH6 to Ge63Si63H92. The variation of the energy gap is shown from nearly 7 eV toward bulk value which is slightly higher than the average of Si and Ge energy gaps. Variations of bond lengths, tetrahedral, and dihedral angles as the number of atoms increases are shown taking into account the effect of shape fluctuations. Localized and delocalized electronic charge distribution and bonds for these molecules are discussed. Vibrational radial breathing mode (RBM) converges from its initial molecular value at 332 cm?1 to its bulk limit at 0 cm?1 (blue shift). Longitudinal optical-highest reduced mass mode (HRMM) converges from its initial molecular value 332 cm?1 to experimental bulk limit at 420.7 cm?1 (red shift). Hydrogen vibrational modes are nearly constant in their frequencies as the size of diamondoids increases in contrast with lower frequency Ge–Si vibrational modes. GeSi diamondoids can be identified from surface hydrogen vibrational modes fingerprint, while the size of these diamondoids can be identified from Ge–Si vibrational modes.  相似文献   

18.
By performing density functional theory calculations, we have investigated the Michael addition of acetylacetone to methyl vinyl ketone in the absence and presence of the ionic liquid 1‐butyl‐3‐methylimidazolium hydroxide ([bmIm]OH). In the absence of ionic liquids, acetylacetone is firstly tautomerized to enol form and then takes place Michael addition to methyl vinyl ketone. As in the catalyzed Michael addition reaction, a bmIm+‐OH? ion pair is introduced into the reaction system to model the effect of the ionic liquid environment on the reactivity. The calculated results show that the anion enhances nucleophilic ability of acetylacetone since the OH? anion captures a proton to form an acetylacetone anion‐H2O complex, and the cation improves the electrophilic ability of methyl vinyl ketone by forming intermolecular hydrogen‐bonds. Both the remarkable effects of the cation and anion on the reactivity of reactants promote this reaction, which take place more easily compared with uncatalyzed reaction. The calculated results show that the main product of the Michael addition is in its ketone form. Our study provides a detailed reaction mechanism of Michael addition catalyzed by basic ionic liquid [bmIm]OH and clearly reveal the catalytic role of ionic liquid in important chemical reaction. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010  相似文献   

19.
We isolated α‐chitin, β‐chitin, and γ‐chitin from natural resources by a chemical method to investigate the crystalline structure of chitin. Its characteristics were identified with Fourier transform infrared (FTIR) and solid‐state cross‐polarization/magic‐angle‐spinning (CP–MAS) 13C NMR spectrophotometers. The average molecular weights of α‐chitin, β‐chitin, and γ‐chitin, calculated with the relative viscosity, were about 701, 612, and 524 kDa, respectively. In the FTIR spectra, α‐chitin, β‐chitin, and γ‐chitin showed a doublet, a singlet, and a semidoublet at the amide I band, respectively. The solid‐state CP–MAS 13C NMR spectra revealed that α‐chitin was sharply resolved around 73 and 75 ppm and that β‐chitin had a singlet around 74 ppm. For γ‐chitin, two signals appeared around 73 and 75 ppm. From the X‐ray diffraction results, α‐chitin was observed to have four crystalline reflections at 9.6, 19.6, 21.1, and 23.7 by the crystalline structure. Also, β‐chitin was observed to have two crystalline reflections at 9.1 and 20.3 by the crystalline structure. γ‐Chitin, having an antiparallel and parallel structure, was similar in its X‐ray diffraction patterns to α‐chitin. The exothermic peaks of α‐chitin, β‐chitin, and γ‐chitin appeared at 330, 230, and 310, respectively. The thermal decomposition activation energies of α‐chitin, β‐chitin, and γ‐chitin, calculated by thermogravimetric analysis, were 60.56, 58.16, and 59.26 kJ mol?1, respectively. With the Arrhenius law, ln β was plotted against the reciprocal of the maximum decomposition temperature as a straight line; there was a large slope for large activation energies and a small slope for small activation energies. α‐Chitin with high activation energies was very temperature‐sensitive; β‐Chitin with low activation energies was relatively temperature‐insensitive. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 3423–3432, 2004  相似文献   

20.
The geometric structures, infrared spectra and hydrogen bond binding energies of the various hydrogen‐bonded Res?‐water complexes in states S0 and S1 have been calculated using the density functional theory (DFT) and time‐dependent density functional theory (TD‐DFT) methods, respectively. Based on the changes of the hydrogen bond lengths and binding energies as well as the spectral shifts of the vibrational mode of the hydroxyl groups, it is demonstrated that hydrogen bonds HB‐II, HB‐III and HB‐IV are strengthened while hydrogen bond HB‐I is weakened in the four singly hydrogen‐bonded Res?‐Water complexes upon photoexcitation. When the four hydrogen bonds are formed simultaneously between one resorufin anion and four water molecules in the Res?‐4Water complex, all the hydrogen bonds are weakened in both the ground and excited states compared with those in the corresponding singly hydrogen‐bonded Res?‐Water complexes. Furthermore, in complex Res?‐4Water, hydrogen bonds HB‐II and HB‐IV are strengthened while hydrogen bonds HB‐I and HB‐III are weakened after the electronic excitation. The hydrogen bond strengthening and weakening in the various hydrogen‐bonded Res?‐water complexes should be due to the redistribution of the charges among the four heteroatoms (O1‐3 and N1) within the resorufin molecule upon the optical excitation.  相似文献   

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