Crystalline inclusion compounds of a new diol host featuring a combination of anthracene and 9-fluorenol units

The diol host compound 2 has been synthesised and its behaviour to form crystalline inclusion compounds is discussed in comparison with an analogous ethynylene spaced host compound 1. The rotation around the fluorenol–anthracene bonds in 2 is highly restricted as indicated by solution NMR spectroscopy, molecular mechanics and semi-empirical calculations. Single-crystal X-ray structures of the inclusion complexes of 2 with 1-BuOH (2a), morpholine/H₂O (2b) and DMSO (2c) are in agreement with the bent geometry of the anthracene ring system suggested by the calculations. The structures exhibit specific modes of hydrogen bond interactions.     

Combinations of natural and synthetic inclusion compounds and their thermal stability

Inclusion compounds do not belong to the group of simple compounds. They consist of molecules of the host and guest components. Some of them form supermolecules and exhibit super-molecular properties.Combinations of inclusion compounds as even more complicated systems need more methods to be used for their identification. Thermoanalytical study enables to study the sorption during their formation and the progressive liberation of their individual components and parts. Many layered silicates, phosphates and other similar synthetic and natural compounds enclosing or adsorbing cyclodextrins, pharmaceuticals, aromatics, various agrochemicals and inorganics are analysed from the view of their formation and properties.     

Guest-induced supramolecular isomerism in inclusion complexes of T-shaped host 4,4-bis(4'-hydroxyphenyl)cyclohexanone

The T-shaped host molecule 4,4-bis(4'-hydroxyphenyl)cyclohexanone (1) has an equatorial phenol group and a cyclohexanone group along the arms and an axial phenol ring as the stem. The equatorial phenyl ring adopts a "shut" or "open" conformation, like a windowpane, depending on the size of the guest (phenol or o/m-cresol), for the rectangular voids of the hydrogen-bonded ladder host framework. The adaptable cavity of host 1 expands to 11x15-18 A through the inclusion of water with the larger cresol and halophenol guests (o-cresol, m-cresol, o-chlorophenol, and m-bromophenol) compared with a size of 10x13 A for phenol and aniline inclusion. The ladder host framework of 1 is chiral (P2(1)) with phenol, whereas the inclusion of isosteric o- and m-fluorophenol results in a novel polar brick-wall assembly (7x11 A voids) as a result of auxiliary C-H...F interactions. The conformational flexibility of strong O-H...O hydrogen-bonding groups (host 1, phenol guest), the role of guest size (phenol versus cresol), and weak but specific intermolecular interactions (herringbone T-motif, C-H...F interactions) drive the crystallization of T-host 1 towards 1D ladder and 2D brick-wall structures, that is, supramolecular isomerism. Host 1 exhibits selectivity for the inclusion of aniline in preference to phenol as confirmed by X-ray diffraction, 1H NMR spectroscopy, and thermogravimetry-infrared (TG-IR) analysis. The T(onset) value (140 degrees C) of aniline in the TGA is higher than those of phenol and the higher-boiling cresol guests (T(onset)=90-110 degrees C) because the former structure has more O-H...N/N-H...O hydrogen bonds than the clathrate of 1 with phenol which has O-H...O hydrogen bonds. Guest-binding selectivity for same-sized phenol/aniline molecules as a result of differences in hydrogen-bonding motifs is a notable property of host 1. Host-guest clathrates of 1 provide an example of spontaneous chirality evolution during crystallization and a two-in-one host-guest crystal (phenol and aniline), and show how weak C-H...F interactions (o- and m-fluorophenol) can change the molecular arrangement in strongly hydrogen-bonded crystal structures.     

Importance of packing coefficients of host cavities in the isomerization of open host frameworks: guest-size-dependent isomerization in cholic acid inclusion crystals with monosubstituted benzenes

The crystal structures of inclusion compounds of cholic acid (CA) with 28 monosubstituted benzenes have been systematically investigated. All of the crystals belong to the monoclinic space group P2(1) and have bilayer structures with one-dimensional molecular channels that can include guest compounds. They are classified into four types of host frameworks that depend on the conformations and stacking modes of the host compound. The host frameworks and the host-guest ratios depend primarily on the molecular volumes of the guest compounds. The packing coefficient of the host cavity (PCcavity), which is the volume ratio of the guest compound to the host cavity, is used to clarify the relationship between the guest volume and isomerization of the host frameworks. The value of PCcavity, for stable inclusion compounds lies in the range of 55-70%. Compounds out of this range induce isomerization of the host frameworks. The packing coefficients of other host-guest compounds, in which the guest components are included in the host cavities through steric dimensions and van der Waals forces, are also in this range. These results indicate that PCcavity is a useful parameter correlation for guest recognition and isomerization of the host frameworks.     

Structures of 1∶1 inclusion complexes of cholic acid with fluoroethanols; Conformational analysis of fluoroethanols in the host cavity

The crystal structures of the inclusion complexes of cholic acid (CA) with 2-fluoroethanol (MFEtOH), 2,2-difluoroethanol (DFEtOH) and 2,2,2-trifluoroethanol (TFEtOH) have been determined by X-ray crystallography, which demonstrates that the guest alcohols are accommodated inside the cavity provided by CA molecules in a similar manner to that for the ethanol molecule in the CA-ethanol inclusion complex. As distinct from the ethanol molecule, the methylene C atoms of the fluoroethanols are not disordered; instead, the substituted F atoms are statistically disordered. All the alcohols are hydrogen-bonded to the OH groups of CA. The X-ray study showed that 46% of MFEtOH adopt thetrans-trans conformer, which is different from the exclusively predominant conformer in the gas and liquid phases, i.e.,thegauche-trans conformer. The study also showed that the F atoms of DFEtOH are statistically disordered, suggesting the possibility that three conformers exist inside the cavity. Such disorder presumably occurs in order to fill the vacant space around the CH₂F and CHF₂ groups inside the cavity. By contrast, we could not observe any disorder of the F atoms of TFEtOH. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82176 (31 pages).     

A versatile tripodal host with cylindrical conformation: solvatomorphism, inclusion behavior, and separation of guests

Tripodal host 2,4,6-tris(1-phenyl-1H-tetrazolylsulfanylmethyl)mesitylene (TPTM) has been synthesized through a facile procedure. As expected, it adopts an all-syn cylindrical configuration, thereby delimiting an inner cavity. To explore the solvatomorphism and inclusion behavior of TPTM, a series of organic and inorganic species were employed as guests to afford 17 inclusion compounds (1, 2, 3 a-3 f, 4 a-4 i) that can be classified into four distinct forms (forms I-IV), under similar conditions. These compounds were characterized by single-crystal and powder X-ray diffraction, and (1)H NMR studies. In compound 1 with form I, one foot of a TPTM molecule inserts into the cavity of an opposite TPTM molecule to form a dimeric "hand-shake" motif with one acetonitrile molecule occupying the void. Compound 2 with form II contains three types of capsule-shaped dimers, each of which holds a CH(2)Cl(2) molecule as the guest. In compounds 3 a-3 f with form III, each pair of TPTM molecules interdigitates to form a capsule-shaped dimeric unit accommodating a guest molecule in the endo-cavity. In compounds 4 a-4 i with form IV, each TPTM molecule makes contact with three nearby TPTM molecules in a "self-including" manner to generate a graphite-like organic layer, and through further superposition to form open hexagonal channels. From the experimental and theoretical results, the intrinsic properties of guest molecules, such as size, shape, and self-interaction, can be regarded as the main factors leading to these solvatomorphism phenomena and the subtle inclusion behavior of TPTM. Thermogravimetric analyses show that the encapsulated guest molecules in these compounds can be evacuated at relatively high temperatures, and this demonstrates the outstanding inclusion capability of TPTM. In addition, for compound 4 a with benzene molecules in the channels, reversible exchange of toluene and separation of xylene isomers on single crystals have been observed.     

The spectrophotometric study of a fluorescence‐enhanced inclusion complex threaded with β‐cyclodextrin: Synthesis and characterization

A novel achiral monomer end‐capped with a phenyl‐[1,3,4]oxadiazolyl group and threaded through β‐cyclodextrin was synthesized to investigate the host‐guest interactions in the inclusion complex. ¹H NMR studies revealed that one or two cyclodextrin molecules were threaded onto the synthesized achiral monomer, leading to the formation of a fibrous construction of self‐assembled inclusion complexes. The formation of a self‐assembled inclusion complex was identified using SEM and TEM. The highly ordered alignment of self‐assembled supramolecules was confirmed using polarized optical microscopy. We demonstrate an easy process for the fabrication of nano‐structured self‐assembled inclusion complexes in pyridine/ethanol (1 mL/10 mL) as well as the enhancement of photo‐induced fluorescence via monomers end‐capped with a phenyl‐[1,3,4]oxadiazolyl moiety threaded with β‐cyclodextrins. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 3368–3374, 2010     

Metal-organic frameworks from chiral square-pyramidal copper(II) complexes: Enantiospecific inclusion and perfectly polar alignment of guest and host molecules

The physical properties of [CuL¹₂(H₂O)] (1) and [CuL²₂(H₂O)] (2) and preparation and crystal structures of the inclusion compounds 1·(P)-C₂H₄Br₂, 2·(M)-C₂H₄Br₂, 1·CH₃CN and 2·CH₃CN are described. HL¹ and HL² (H represents the dissociable phenolic proton) are the N,O-donor chiral reduced Schiff bases N-(2-hydroxy-5-nitrobenzyl)-(R)-α-methyl-benzylamine and N-(2-hydroxy-5-nitrobenzyl)-(S)-α-methylbenzylamine, respectively. All the compounds crystallize in the non-centrosymmetric space group C2. In the crystal lattice, the host [CuLⁿ₂(H₂O)] (1 and 2) molecules connected by O−H?O and C−H?O interactions form perfectly polar two-dimensional networks. In these chiral and polar host frameworks, enantiospecific inclusion with polar ordering of the right-handed (P) and the left-handed (M) gauche form of 1,2-dibromoethane as well as polar alignment of acetonitrile molecules are observed. The host and guest molecules are linked by C−H?O interactions. The O-atoms of the nitro substituent on the ligands of 1 and 2 act as the acceptors in all these intermolecular O−H?O and C−H?O interactions. The structures reported in this work provide rare examples of enantiospecific trapping of the chiral rotamers of 1,2-dibromoethane as well as perfectly polar alignment of both guest and host molecules.     

Crystal Structures of β‐Cyclodextrin Inclusion Complexes with 7‐Hydroxycoumarin and 4‐Hydroxycoumarin and Substituent Effects on Inclusion Geometry

Two inclusion complexes of β‐cyclodextrin‐7‐hydroxycoumarin ( 1 ) and β‐cyclodextrin‐4‐hydroxycoumarin ( 2 ) were prepared and their crystal structures were investigated by single crystal X‐ray crystallography under cryogenic condition. Both structures consist of stacks of face‐to‐face cyclodextrin dimers arranged in brickwork‐like pattern along the crystallographic a‐axis. For complex 1 , each of the two dimeric β‐cyclodextrins includes one 7‐hydroxycoumarin molecule that penetrates deeply into the cyclodextrin dimer and locates its lactonering at the center of the dimer cavity. For complex 2 , each cyclodextrin dimer accommodates three 4‐hydroxycoumarin molecules. One of them is sandwiched between two units of the cyclodextrin dimer, the other two are shallowly included in the cavities of the dimeric cyclodextrins respectively and protrude their lactone rings from the primary end of the cyclodextrin. The substituent effects of guest molecules on inclusion geometry of various coumarin molecules in β‐cyclodextrin were examined.     

真空条件下β-环糊精和对-甲基苯酚包结物动态结构的分子动力学模拟

本文报道了真空状态下主体β-环糊精和客体对-甲基苯酚形成的包结物在一定时间间隔内动态微观结构的分子动力学模拟结果。研究表明，对-甲基苯酚在环糊精腔内的运动具较大的自由度，但由于存在范德华作用，其运动受到一定的限制，同时通过计算观察到包结前后主客体的某些微观结构和性质发生了较为明显的变化。本文还给出了计算得到的主客体包结物的时间平均构象。     

Mesophase study of pure and doped cyanobiphenyl liquid crystals with salen-type systems

Two salen Schiff base ligands derived from the condensation of ethylendiamine on salicylaldehyde and 5-chlorosalicylaldehyde, namely N,N′-bis(salicylidene)ethylene-diamine (L1) and N,N′-bis(5-chlorosalicylidene)ethylene-diamine (L2) as well as two of their iron(III) and nickel(II) complexes, were prepared and then used as doping agents of two thermotropic liquid crystals (LCs) of cyanobiphenyl type, namely 4-cyano-4′-n-pentyl-biphenyl (5CB) and 4-cyano-4′-n-octyl-biphenyl (8CB). The study of the mesophase of pure and doped LCs was carried out by UV–visible spectroscopy equipped with a heating compartment for precise temperature control, differential scanning calorimetry and polarised optical microscopy. The characteristic nematic/isotropic and smectic-A/nematic transition temperatures of 5CB- and 8CB-based systems were measured and then compared to those of the literature concerning pure 5CB and 8CB. Optical microscopy results revealed the existence of Schlieren and focal conic textures of the nematic and smectic states, respectively, both of pure and doped LCs. The homogeneity of the obtained guest–host systems was proven by the linear evolution of their transition temperatures as function of the solute concentration, with correlation factors close to unity.     

Composite host lattices of 4,4′‐sulfonyldibenzoate water/boric acid in two tetrapropylammonium inclusion compounds

Two novel inclusion compounds of 4,4′‐sulfonyldibenzoate anions and tetrapropylammonium cations with different ancillary molecules of water and boric acid, namely bis(tetrapropylammonium) 4,4′‐sulfonyldibenzoate dihydrate, 2C₁₂H₂₈N⁺·C₁₄H₈O₆S²⁻·H₂O ( 1 ), and bis(tetrapropylammonium) 4,4′‐sulfonyldibenzoate bis(boric acid), 2C₁₂H₂₈N⁺·C₁₄H₈O₆S²⁻·2H₃BO₃ ( 2 ), were prepared and characterized using single‐crystal X‐ray diffraction. In the two salts, the host 4,4′‐sulfonyldibenzoic acid molecules, which are converted to the corresponding anions under basic conditions, can be regarded as proton acceptors which link different proton donors of the ancillary molecules of water or boric acid. In this way, an isolated hydrogen‐bonded tetramer is constructed in salt 1 and a ribbon is constructed in salt 2 . The tetramers and ribbons are then packed in a repeating manner to generate various host frameworks, and the tetrapropylammonium guest counter‐ions are contained in the cavities of the host lattices to give the final stable crystal structures. In these two salts, although the host anion and guest cation are the same, the difference in the ancillary small molecules results in different structures, indicating the significance of ancillary molecules in the formation of crystal structures.     

Molecular dynamics simulation study of the structural features and inclusion capacities of cucurbit[6]uril derivatives in aqueous solutions

Molecular dynamics (MD) simulations were performed for cucurbit[6]uril (CB6) methyl and cyclohexyl derivatives in aqueous solutions. Furthermore, MD simulations have been conducted to study the inclusion complexes between each CB6 derivative with α,ω-pentane diammonium ion (NH₃⁺(CH₂)₅NH₃⁺) to estimate the binding free energies, the complex geometries and the intermolecular forces responsible for complex formation. Results show a complete inclusion of the guest molecule in the cavity of the host for all complexes. Results also indicate that the guest dynamics inside the cavity of the substituted host is similar to that for the unsubstituted host. This demonstrates that the molecular recognition of the host is not affected by the alkyl substitution at the equator. Also, there is an insignificant conformational change of the macrocyclic structure upon inclusion of the guest. Molecular mechanics/Poisson Boltzmann surface area method was used to estimate the binding free energy of each complex. Results indicate that host–guest electrostatic interactions make the largest contribution to the complex binding free energy. Moreover, van der Waals interactions add significantly to the complex stability. The guest molecules show more or less similar binding free energies with the substituted CB6 that exhibits slightly more negative values than unsubstituted CB6 which is proved also by umbrella sampling.     

Separation of closely related structural isomers by inclusion complexation with tailor-made host compounds. Crystal structures of 2,2-di (p-hydroxyphenyl) propane and Its 1:1 complex withp-cresol

The crystal structures of the 2,2-di(p-hydroxyphenyl)propane host and its 1:1 adducts withm-andp-cresol guests have been studied. The preferential complexation of this host withp-cresol overm-cresol is related to the opposite trend exhibited by 1,1-di(p-hydroxyphenyl)cyclohexane; both hosts can separate effectively the two cresols from their liquid mixture by crystalline inclusion. A plausible explanation of the different inclusion features is provided by examining the intermolecular association in the corresponding solids. The analysed structures are stabilized by strong and continuous H-bonding between the constituent entities along two dimensions, and by weak van der Waals forces along the third axis. The p-cresol complex of the title host reveals a unique arrangement within and a more efficient packing of the layered structure, and thus represents a more stable and less soluble crystal lattice than itsm-cresol analog. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82099 (8 pages).     

13C and1H NMR study of molecular motion in the deoxycholic acid-ferrocene solid inclusion compound

Using solid-state ¹³ C NMR spectroscopy and also measurements of proton spin-lattice relaxation times T ₁ and second moments M ₂ , we have investigated molecular motion in solid inclusion compounds of deoxycholic acid with ferrocene in the interval 100–400 K. We have identified various dynamic processes occurring with participation of molecules of the matrix and the included molecules. We have shown that in addition to rapid reorientations of the cyclopentadienyl rings, the ferrocene molecules undergo 180° jumps about the C ₂ axis. We have determined the parameters for all the molecular motions. We discuss the conformational state of the included molecules.A. N. Nesmeyanov Institute of Heteroorganic Compounds, Russian Academy of Sciences, Moscow 117813. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 3, pp. 586–593, March, 1992.     

Organic intercalation material: reversible change in interlayer distances by guest release and insertion in sandwich-type inclusion crystals of cholic acid

Cholic acid (CA) forms inclusion crystals that have a sandwich-type lamellar structure constructed by the alternative stacking of host bilayers and guest layers. Five disubstituted benzenes, o-toluidine, m-fluoroaniline, o-chlorotoluene, o-bromotoluene, and indene, are accommodated in the two-dimensional void space between the host bilayers at 1:2 host-guest stoichiometries. Thermal gravimetric analysis of the inclusion crystals revealed that all the guest molecules, except o-toluidine, are released in two separate steps, indicating the formation of intermediate crystals after the first guest release. Adequate heat treatment of the four inclusion crystals induces release of half or three quarters of the guest molecules. X-ray diffraction patterns of the intermediate crystals revealed that the crystals have a bilayer structure the same as those of the common CA inclusion crystals. They have one-dimensional cavities, in which the guest molecules are included at a 1:1 or 2:1 host-guest stoichiometry. These facts indicate that the host bilayers move 1.6-4.5 A perpendicular to the layer direction by desorption of the guest molecules. Furthermore, a reverse structural change is also achieved by absorption of the guest molecules to regenerate the starting sandwich-type inclusion crystals. This reversible change in the host bilayer by the guest sorption and desorption is a novel example of organic intercalation materials.     

A potentiometric titration study on the dissociation of bile acids related to the mode of interaction between different head groups of nonionic surfactants with free bile salts upon mixed micelle formation in water

By constructing an elaborate set of potentiometric titration together with data analysis system, apparent acid dissociation indices (pK _a ^app ) for two bile acids were determined in the mixed surfactant system of bile salts (Sodium Deoxycholate, NaDC, and Sodium Chenodeoxycholate, NaCDC) with nonionic surfactants (Hexaethyleneglycol monon-dodecylether, C₁₂E₆, Decanoyl-N-methylglucamide, MEGA-10) in aqueous solution at ionic strength 1.5 as a function of mole fraction in the surfactant mixture. It was found that with increasing the bile salt concentration, pK _a ^app as well as pH showed an abrupt rise at a certain concentration of the bile salt being regardable as a critical micellization concentration (CMC) and reached a constant value at the range sufficiently higher than CMC for each pure bile salt system, meaning that the dissociation degree of carboxyl group in micelle is smaller than that in bulk. In the mixed systems of free bile salts with nonionic surfactants, the dissociation state of carboxyl groups in mixed micelles depends on the species of hydrophilic group of nonionic surfactants as well as on mole fraction in the surfactant mixture.     

Differentiation of various traditional Chinese medicines derived from animal bile and gallstone: simultaneous determination of bile acids by liquid chromatography coupled with triple quadrupole mass spectrometry

Animal biles and gallstones are popularly used in traditional Chinese medicines, and bile acids are their major bioactive constituents. Some of these medicines, like cow-bezoar, are very expensive, and may be adulterated or even replaced by less expensive but similar species. Due to poor ultraviolet absorbance and structural similarity of bile acids, effective technology for species differentiation and quality control of bile-based Chinese medicines is still lacking. In this study, a rapid and reliable method was established for the simultaneous qualitative and quantitative analysis of 18 bile acids, including 6 free steroids (cholic acid, chenodeoxycholic acid, deoxycholic acid, lithocholic acid, hyodeoxycholic acid, and ursodeoxycholic acid) and their corresponding glycine conjugates and taurine conjugates, by using liquid chromatography coupled with tandem mass spectrometry (LC/MS/MS). This method was used to analyze six bile-based Chinese medicines: bear bile, cattle bile, pig bile, snake bile, cow-bezoar, and artificial cow-bezoar. Samples were separated on an Atlantis dC₁₈ column and were eluted with methanol–acetonitrile–water containing ammonium acetate. The mass spectrometer was monitored in the negative electrospray ionization mode. Total ion currents of the samples were compared for species differentiation, and the contents of bile acids were determined by monitoring specific ion pairs in a selected reaction monitoring program. All 18 bile acids showed good linearity (r² > 0.993) in a wide dynamic range of up to 2000-fold, using dehydrocholic acid as the internal standard. Different animal biles could be explicitly distinguished by their major characteristic bile acids: tauroursodeoxycholic acid and taurochenodeoxycholic acid for bear bile, glycocholic acid, cholic acid and taurocholic acid for cattle bile, glycohyodeoxycholic acid and glycochenodeoxycholic acid for pig bile, and taurocholic acid for snake bile. Furthermore, cattle bile, cow-bezoar, and artificial cow-bezoar could be differentiated by the existence of hyodeoxycholic acid and the ratio of cholic acid to deoxycholic acid. This study provided bile acid profiles of bile-based Chinese medicines for the first time, which could be used for their quality control.