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1.
The five trimers of H2O···HNC···H2O, H2O···H2O···HNC, HNC···H2O···H2O, H2O···HNC···HNC, and HNC···HNC···H2O have been studied with quantum chemical calculations. Their structures, harmonic vibrational frequencies and interaction energies have been calculated at the B3LYP and MP2 levels with the aug‐cc‐pVDZ and aug‐cc‐pVTZ basis sets. The cooperative effect on these properties has also been studied quantitatively. For HNC:(H2O)2 systems, the cyclic H2O···H2O···HNC trimer is most stable with an interaction energy of ?16.01 kcal/mol and a large cooperative energy of ?3.25 kcal/mol at the MP2/aug‐cc‐pVTZ level. For H2O:(HNC)2 systems, the interaction energy and cooperative energy in the H2O···HNC···HNC trimer are larger than those in the HNC···HNC···H2O trimer. The NH stretch frequency has a blue shift for the terminal HNC molecule in the HNC···H2O···H2O and HNC···HNC···H2O trimers and a red shift in other cases. A many‐body analysis has also been performed to understand the interaction energies in these hydrogen‐bonded clusters. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011  相似文献   

2.
An ab initio computational study of the dual functions of C?S group in the M2C?S ··· HCN (M = H, F, Cl, Br, HO, H3C, H2N) complex has been performed at the MP2(Full)/aug‐cc‐pVTZ level. The C?S group can act as both the electron donor and acceptor, thus two minima complexes were found for each molecular pairs. The interaction energy of hydrogen bond in the F, Cl, or Br substituted complexes is less negative than that in the corresponding H2CS one, while the interaction energy of the σ‐hole interaction is more negative. The OH substitution weakens the hydrogen bond, whereas the H3C and H2N substitution strengthens it. The σ‐hole interaction in the HO, H3C, and H2N complexes is very weak. The substitution effect has been understood with electrostatic induction and conjugation effects. The energy decomposition analysis has been performed for the halogen‐substituted complexes. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012.  相似文献   

3.
The time‐dependent density functional theory (TDDFT) method has been carried out to investigate the excited‐state hydrogen‐bonding dynamics of 4‐aminophthalimide (4AP) in hydrogen‐donating water solvent. The infrared spectra of the hydrogen‐bonded solute?solvent complexes in electronically excited state have been calculated using the TDDFT method. We have demonstrated that the intermolecular hydrogen bond C? O···H? O and N? H···O? H in the hydrogen‐bonded 4AP?(H2O)2 trimer are significantly strengthened in the electronically excited state by theoretically monitoring the changes of the bond lengths of hydrogen bonds and hydrogen‐bonding groups in different electronic states. The hydrogen bonds strengthening in the electronically excited state are confirmed because the calculated stretching vibrational modes of the hydrogen bonding C?O, amino N? H, and H? O groups are markedly red‐shifted upon photoexcitation. The calculated results are consistent with the mechanism of the hydrogen bond strengthening in the electronically excited state, while contrast with mechanism of hydrogen bond cleavage. Furthermore, we believe that the transient hydrogen bond strengthening behavior in electroniclly excited state of chromophores in hydrogen‐donating solvents exists in many other systems in solution. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010  相似文献   

4.
Density functional theory at the B3LYP level with the 6‐311G** basis set is performed to calculate the systems consisting of up to four hydrazoic acid molecules. The dimers are found to exhibit cyclic and chain structures with N … H contacts at ca. 2.1–2.7 Å. However, there are only cyclic structures with N … H contacts at ca. 2.0–2.3 Å and 2.0–2.1 Å in the trimer and tetramer, respectively. Hydrogen bond distances in the trimer and tetramer are shorter than those in the cyclic dimer as a result of the stronger interaction between molecules. The contribution of cooperative effect to the interaction energy is significant. After the correction of the basis set superposition error and zero‐point energy, the binding energies are ?10.69, ?29.34, and ?54.26 kJ·mol?1 for the most stable dimer, trimer, and tetramer, respectively. The calculated IR shifts for N? H stretching mode increase with the size of the cluster growths, reaching more than 200 cm?1 in the tetramer. For the most stable clusters, the transition from the monomer to dimer, dimer to trimer, and trimer to tetramer involve changes of ?14.40, ?25.68, and ?31.88 kJ·mol?1 for the enthalpies at 298.15 K and 1atm, respectively. We also perform Mulliken populations analysis and find the Mulliken populations on intermolecular N … H increasing in the sequence of the dimer, trimer, and tetramer. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 94: 279–286, 2003  相似文献   

5.
In this article, the geometry structures of hydrogen bond chains of formamide and N‐methylacetamide and their hydrogen‐bonded complexes with water were optimized at the MP2/6‐31G* level. Then, we performed Møller–Plesset perturbation method with 6‐311++g**, aug‐cc‐pvtz basis sets to study the cooperative influence to the total hydrogen bond energy by the N? H ··· OH2 and C?O ··· HOH hydrogen bonds. On the basis of our results, we found that the cooperativity of the hydrogen‐bonded complexes become weaker as N? H ··· OH2 and C?O ··· HOH hydrogen bonds replacing N? H ··· O?C hydrogen bonds in protein and peptide. It means that the N? H and C?O bonds in peptide prefer to form N? H ··· O?C hydrogen bond rather than to form C?O ··· HOH and N? H ··· OH2. It is significant for understanding the structures and properties of the helical or sheet structures of protein and peptide in biological systems. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011  相似文献   

6.
The nature of the complexes PhTH3 H3ZO and PhSiF3 H3ZO (T = Si, Ge, and Sn; Z = N, P, and As) has been investigated at the MP2/aug’‐cc‐pVTZ(PP) level. These complexes are primarily stabilized by one T···O tetrel bond. Interaction energies of these complexes vary from 11 to 220 kJ/mol, and T···O separations from 1.89 to 3.09 Å. Charge transfer from the O lone pair into the C T and T H σ* antibonding orbitals leads to the stabilization of these complexes. The T···O tetrel bond between PhTH3/PhSiF3 and H3NO exhibits a significant degree of covalence, characterized by the large interaction energy, negative energy density, and large charge transfer. Furthermore, a pentacoordinate silicon (IV) complex is formed in PhSiF3 H3NO with the Si···O distance almost close to the length of Si O bond. This indicates that the oxygen atom in N‐oxides shows a strong affinity to the silicon atom in organosilicon compounds.  相似文献   

7.
8.
In ferrocene‐1,1′‐diyl­bis­(di­phenyl­methanol)–2,2′‐dipyridyl­amine (1/1), [Fe(C18H15O)2]·C10H9N3, (I), there is an intramolecular O—H?O hydrogen bond [H?O 2.03 Å, O?O 2.775 (2) Å and O—H?O 147°] in the ferrocenediol component, and the two neutral molecular components are linked by one O—H?N hydrogen bond [H?N 1.96 Å, O?N 2.755 (2) Å and O—H?N, 157°] and one N—H?O hydrogen bond [H?O 2.26 Å, N?O 3.112 (2) Å and N—H?O 164°] forming a cyclic R(8) motif. One of the pyridyl N atoms plays no part in the intermolecular hydrogen bonding, but participates in a short intramolecular C—H?N contact [H?N 2.31 Å, C?N 2.922 (2) Å and C—H?N 122°].  相似文献   

9.
The nature of the interactions of cyanide with lithium and hydrogen halides was investigated using ab initio calculations and topological analysis of electron density. The computed properties of the lithium‐bonded complexes RCN···LiX (R = H, F, Cl, Br, C?CH, CH?CH2, CH3, C2H5; X = Cl, Br) were compared with those of corresponding hydrogen‐bonded complexes RCN···HX. The results show that both types of intermolecular interactions are “closed‐shell” noncovalent interactions. The effect of substitution on the interaction energy and electron density at the bond critical points of the lithium and hydrogen bonding interactions is similar. In comparison, the interaction energies of lithium‐bonded complexes are more negative than those of hydrogen‐bonded counterparts. The electrostatic interaction plays a more important role in the lithium bond than in the hydrogen bond. On complex formation, the net charge and energy of the Li atom decrease and the atomic volume increases, while the net charge and energy of the H atom increase and the atomic volume decreases. © 2013 Wiley Periodicals, Inc.  相似文献   

10.
A novel single‐electron sodium bond system of H3C···Na? H (I), H3C···Na? OH(II), H3C···Na? F(III), H3C···Na‐CCH(IV), H3C···Na? CN (V) and H3C···Na? NC (VI) complexes has been studied by using MP2/6‐311++G** and MP2/aug‐cc‐pVTZ methods for the first time. We demonstrated that the single‐electron sodium bond H3C···Na? Y formed between H3C and Na? Y (Y?H, OH, F, CCH, CN, and NC) could induce the Na? Y increased and stretching frequencies of I–IV and VI are red‐shifted, including the Na? N bond in complex V is blue‐shifted abnormally. The interaction energies are calculated at two levels of theory [MP2, CCSD(T)] with different basis. The results shows that the strength of binding bond in group 2 (IV–VI) with π electrons are stronger than that of group 1 (I–III) without π electrons. For all complexes, the main orbital interactions between moieties H3C and Na? Y are LP1(C)→LP*1(Na). By comparisons with some related systems, it is concluded that the strength of single‐electron bond is increased in the order: hydrogen bond < bromine bond < sodium bond < lithium bond. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2011  相似文献   

11.
Methyl radical complexes H3C…HCN and H3C…HNC have been investigated at the UMP2(full)/aug‐cc‐pVTZ level to elucidate the nature of hydrogen bonds. To better understand the intermolecular H‐bond interactions, topological analysis of electron density at bond critical points (BCP) is executed using Bader's atoms‐in‐molecules (AIM) theory. Natural bond orbital (NBO) analysis has also been performed to study the orbital interactions and change of hybridization. Theoretical calculations show that there is no essential difference between the blue‐shift H‐bond and the conventional one. In H3C…HNC complex, rehybridization is responsible for shortening of the N? H bond. The hyperconjugative interaction between the single electron of the methyl radical and N? H antibonding orbital is up to 7.0 kcal/mol, exceeding 3.0 kcal/mol, the upper limit of hyperconjugative n(Y)→σ*(X–H) interaction to form the blue‐shifted H‐bond according to Alabugin's theory. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007  相似文献   

12.
The compounds [Cu(pmda)(crea)]·H2O ( 1 ), [Zn(pmda)(crea)]·H2O ( 2 ) and [Co(pmda)(crea)(H2O)]·H2O ( 3 ) were prepared and characterized by thermal, spectral and X‐ray diffraction methods. In compounds 1 and 2 the MII coordination is of type 4+1 and approaches to a trigonal bipyramid (71.85 and 86.18 %, respectively) with rather linear N(pmda)‐MII‐N(crea) trans‐apical angles, but with different longest coordination bond (Cu‐O(pmda) or Zn‐N(apliphatic, pmda), respectively). Both compounds are isotypic and one intra‐molecular interligand N‐H···O interaction reinforces the molecular recogniton crea‐MII(pmda) chelate. In contrast, the compound 3 exhibits an octahedral coordination, imposed by the 3d7 electronic configuration of the cobalt(II) atom, and the crea‐chelate recognition involves the Co‐N(crea) coordination bond and one intramolecular ‘bifurcated’ H‐bonding interaction between one N‐H(crea) bond and one O(pmda) plus the O(aqua) atoms as ‘acceptors’.  相似文献   

13.
It was established that the cytosine·thymine (C·T) mismatched DNA base pair with cis‐oriented N1H glycosidic bonds has propeller‐like structure (|N3C4C4N3| = 38.4°), which is stabilized by three specific intermolecular interactions–two antiparallel N4H…O4 (5.19 kcal mol?1) and N3H…N3 (6.33 kcal mol?1) H‐bonds and a van der Waals (vdW) contact O2…O2 (0.32 kcal mol?1). The C·T base mispair is thermodynamically stable structure (ΔGint = ?1.54 kcal mol?1) and even slightly more stable than the A·T Watson–Crick DNA base pair (ΔGint = ?1.43 kcal mol?1) at the room temperature. It was shown that the C·T ? C*·T* tautomerization via the double proton transfer (DPT) is assisted by the O2…O2 vdW contact along the entire range of the intrinsic reaction coordinate (IRC). The positive value of the Grunenberg's compliance constants (31.186, 30.265, and 22.166 Å/mdyn for the C·T, C*·T*, and TSC·T ? C*·T*, respectively) proves that the O2…O2 vdW contact is a stabilizing interaction. Based on the sweeps of the H‐bond energies, it was found that the N4H…O4/O4H…N4, and N3H…N3 H‐bonds in the C·T and C*·T* base pairs are anticooperative and weaken each other, whereas the middle N3H…N3 H‐bond and the O2…O2 vdW contact are cooperative and mutually reinforce each other. It was found that the tautomerization of the C·T base mispair through the DPT is concerted and asynchronous reaction that proceeds via the TSC·T ? C*·T* stabilized by the loosened N4? H? O4 covalent bridge, N3H…N3 H‐bond (9.67 kcal mol?1) and O2…O2 vdW contact (0.41 kcal mol?1). The nine key points, describing the evolution of the C·T ? C*·T* tautomerization via the DPT, were detected and completely investigated along the IRC. The C*·T* mispair was revealed to be the dynamically unstable structure with a lifetime 2.13·× 10?13 s. In this case, as for the A·T Watson–Crick DNA base pair, activates the mechanism of the quantum protection of the C·T DNA base mispair from its spontaneous mutagenic tautomerization through the DPT. © 2013 Wiley Periodicals, Inc.  相似文献   

14.
Weak interactions between organic molecules are important in solid‐state structures where the sum of the weaker interactions support the overall three‐dimensional crystal structure. The sp‐C—H…N hydrogen‐bonding interaction is strong enough to promote the deliberate cocrystallization of a series of diynes with a series of dipyridines. It is also possible that a similar series of cocrystals could be formed between molecules containing a terminal alkyne and molecules which contain carbonyl O atoms as the potential hydrogen‐bond acceptor. I now report the crystal structure of two cocrystals that support this hypothesis. The 1:1 cocrystal of 1,4‐diethynylbenzene with 1,3‐diacetylbenzene, C10H6·C10H10O2, (1), and the 1:1 cocrystal of 1,4‐diethynylbenzene with benzene‐1,4‐dicarbaldehyde, C10H6·C8H6O2, (2), are presented. In both cocrystals, a strong nonconventional ethynyl–carbonyl sp‐C—H…O hydrogen bond is observed between the components. In cocrystal (1), the C—H…O hydrogen‐bond angle is 171.8 (16)° and the H…O and C…O hydrogen‐bond distances are 2.200 (19) and 3.139 (2) Å, respectively. In cocrystal (2), the C—H…O hydrogen‐bond angle is 172.5 (16)° and the H…O and C…O hydrogen‐bond distances are 2.25 (2) and 3.203 (2) Å, respectively.  相似文献   

15.
It has been demonstrated in several instances that the 0.001 a.u. (electrons per bohr3) isodensity mapped electrostatic surface potentials on the fluorines along the outermost extensions of the C? F covalent bonds in tetrafluoromethane (CF4) are entirely negative, they are thereby unable to engage in σhole bonding interactions with the negative sites on another molecules. In this study, we have attempted at resolving this controversy by performing various high‐level electronic structure calculations with Quadratic Configuration Integrals of Singles and Doubles QCISD(full), second‐order Møller–Plesset MP2(full), and 12 other Density Functional Theory (DFT) based functionals with and without dispersion corrections, all in conjunction with the 6–311++G(2d,2p) basis set. The results achieved with all the levels of theory utilized suggest that the fluorine's σholes in CF4 are positive regardless of the 0.001‐, 0.0015‐, and 0.002‐a.u. isodensity mapped electrostatic surfaces examined. Because of this specific quality, the fluorines in CF4 have displayed their capacities to form not only 1:1 clusters with the Lewis bases such as water (H2O), ammonia (NH3), formaldehyde (H2C?O), hydrogen fluoride (HF), and hydrogen cyanide (HCN), but also 1:2, 1:3, and 1:4 clusters with the latter three randomly chosen Lewis bases. Various topological and nontopological features obtained from applications of atoms in molecules, noncovalent interaction reduced‐density‐gradient and natural bond orbital analytical tools reveal that the N···F, O···F, and F···F long‐ranged interactions developed between the interacting monomers in H3N···FCF3, H2O···FCF3, and (Y? D)n=1–4···F4C (Y? D = H2C?O, HCN, and HF) are reminiscent of halogen bonding. The nonadditive cooperative and anticooperative energetic effects emerged on cluster formations are discussed in detail. © 2015 Wiley Periodicals, Inc.  相似文献   

16.
The nonadditivity of methyl group in the single‐electron hydrogen bond of the methyl radical‐water complex has been studied with quantum chemical calculations at the UMP2/6‐311++G(2df,2p) level. The bond lengths and interaction energies have been calculated in the four complexes: CH3? H2O, CH3CH2? H2O, (CH3)2CH? H2O, and (CH3)3C? H2O. With regard to the radicals, tert‐butyl radical forms the strongest hydrogen bond, followed by iso‐propyl radical and then ethyl radical; methyl radical forms the weakest hydrogen bond. These properties exhibit an indication of nonadditivity of the methyl group in the single‐electron hydrogen bond. The degree of nonadditivity of the methyl group is generally proportional to the number of methyl group in the radical. The shortening of the C···H distance and increase of the binding energy in the (CH3)2CH? H2O and (CH3)3C? H2O complexes are less two and three times as much as those in the CH3CH2? H2O complex, respectively. The result suggests that the nonadditivity among methyl groups is negative. Natural bond orbital (NBO) and atom in molecules (AIM) analyses also support such conclusions. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2009  相似文献   

17.
Post Hartree–Fock and DFT calculations have been performed for studying the possibility for a benzene support to be linked to various hydrides through a quasi Bz···H? A bond. Interaction energy of compounds, including C? H bonds (CH4, CH3F, CH2O, CHN, CHN? O), N? H bonds (NH3, NH2F, NHC, NHCO, NH3O), and O? H bonds (OH2, OHF, NCOH), were evaluated, taking basis set superposition error (BSSE) and zero point vibrational energy (ZPVE) corrections into account. Numerical convergence of results with respect to the ingredients included at different steps of theory (basis set, DFT functionals, correlation treatments, geometry optimization) was tested mainly on the example of the water adduct and, for comparison, the Bz···H3O+ system containing a cation instead of a neutral molecule. A rather large range of adsorption energies is obtained, from about 1 kcal/mol for methane to more than 6 kcal/mol for cyanic acid, according to the acidic character of the adsorbed species in each family of Bz···H? A bonds. Some consequences for astrophysical problems involving PAHs in the interstellar medium are pointed out. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008  相似文献   

18.
The cooperative enhancement of water binding to the antiparallel β‐sheet models has been studied by quantum chemical calculations at the MP2/6‐311++G**//MP2/6‐31G* level. The binding energies of the two antiparallel β‐sheet models consisting of two strands of diglypeptide are calculated by supermolecular approach. Then water molecules are gradually bonded to the diglypeptide by N? H···OH2 and C?O···HOH hydrogen bonds. Our calculation results indicated that the hydrogen bond length and the atom charge distribution are affected by the addition of H2O molecules. The binding energy of antiparallel diglypeptide β‐sheet models has a great improvement by the increasing of the hydrogen bond cooperativity and the more H2O molecules added the more cooperativity enhancement can be found. The orbital interactions are calculated by natural bond orbital analysis, and the results indicate that the cooperative enhancement is closely related to the orbital interaction. © 2012 Wiley Periodicals, Inc.  相似文献   

19.
The density functional method was applied to the study of 1,1‐diamino‐2,2‐dinitroethylene (Fox‐7)/H2O dimer. All the possible dimers ( 1, 2 and 3 ), as well as the monomers, were fully optimized with the DFT method at the B3LYP/6‐311++G** level. The basis set superposition errors (BSSE) are 4.62, 4.07 and 3.45 kJ/mol, and the zero point energy (ZPE) corrections for the interaction energies are 7.94, 5.66 and 6.40 kJ/mol for 1, 2 and 3 , respectively. Dimer 1 is the most stable, judged by binding energy. After BSSE and ZPE corrections, the greatest corrected intermolecular interaction energy of dimer 1 was predicted to be ?29.36 kJ/mol. The charge redistribution mainly occurs on the adjacent N–H··· O atoms and N–O··· H atoms between submolecules. The oxygen in the nitro group acts as a moderate hydrogen acceptor as compared to water oxygen. Based on the statistical thermodynamic method, the standard thermodynamic functions, heat capacities (C0P), entropies (S0T) and thermal corrections to enthalpy (H0T), and the changes of thermodynamic properties on going from monomer to dimer over the temperature range 200.00‐700.00 K were predicted. It is energetically or thermodynamically favorable for Fox‐7 to bind with H2O and to form dimer 1 at room temperature.  相似文献   

20.
The crystal structures of the four isomeric organic salts 4‐amino­pyridinium 2‐chloro‐4‐nitro­benzoate, (I), 4‐amino­pyridinium 2‐chloro‐5‐nitro­benzoate, (II), 4‐amino­pyridinium 5‐chloro‐2‐nitro­benzoate, (III), and 4‐amino­pyridinium 4‐chloro‐2‐nitro­benzoate, (IV), all C5H7N2+·C7H3ClNO4?, are presented. Compound (I) has one intramolecular hydrogen bond, one intermolecular C—H?O hydrogen bond and π–π‐stacking interactions. Compound (II) has N—H?O, C—H?O and C—H?Cl hydrogen bonds, and Cl?O—C electrostatic interactions. Compound (III) has N—H?O and C—H?O hydrogen bonds. Compound (IV) has a π–π‐stacking interaction, but no C—H?O hydrogen bonds.  相似文献   

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