Crystal and molecular structures of two sulfonium ylides: Influence of secondary S...O interactions on the molecular conformation and packing

Results are reported of an x-ray structure study of two sulfonium ylides formed by reaction of dimethylacetylenedicarboxylate with DMSO. It is demonstrated that one of these forms inter- and the other intramolecular secondary S...O interactions. In the first case they affect the molecular packing in the crystal; in the second, the molecular conformation.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 1, pp. 81–87, January, 1991.The authors thank V. A. Palyulin for calculating the geometry of the cyclic fragment using the Kramer-Pople method.     

Roles of C-H...O=S and pi-stacking interactions in the 2-bromoacrolein complex with N-tosyl-(S)-tryptophan-derived oxazaborolidinone catalyst

[structures: see text] Ab initio and density functional calculations were employed to examine the structures and binding energies of various complexes between 2-bromolacrolein and N-tosyl-(S)-tryptophan-derived B-butyl-1,3,2-oxazaborolidin-5-one (NTOB), a catalyst commonly used for Diels-Alder reactions. Our calculations show that the chiral oxazaborolidinone catalyst serves as a tridentate complexation agent via B...O donor-acceptor, C-H...O hydrogen-bonded, and pi-stacking interactions. The most stable complex (1TS) is predicted to have a binding energy of -93 kJ mol(-1) (deltaG(298) = -29 kJ mol(-1)). The formyl C-H...O hydrogen bond and pi-stacking interaction are the key factors governing the relative stabilities of the four acrolein-NTOB complexes examined. The calculated structure and binding properties of 1TS are consistent with the experimental results on the absorption spectrum of the acrolein-NTOB complex and the effects of substituents on the reactivity of Diels-Alder reactions. 1TS differs from Corey's proposed model of transition-state assembly in two aspects: (1) it involves the s-trans-acrolein and (2) it favors a C-H...O interaction via the sulfonyl oxygen (C-H...O=S), rather than the ring oxygen (C-H...O-B). This calculated structure of the acrolein-catalyst complex provides an alternate explanation of the origin of stereoselectivity in the NTOB-catalyzed Diels-Alder reactions.     

Molecular structures of cation...pi(arene) interactions for alkali metals with pi- and sigma-modalities

The monovalent cations of Na(+), K(+), Rb(+), and Cs(+) derived from the highly electropositive alkali metals represent prototypical charged spheres that are mainly subject to relatively simple electrostatic and solvation (hydration) forces. We now find that the largest of these Rb(+) and Cs(+) are involved in rather strong cation...pi(arene) interactions when they are suitably disposed with the ambifunctional hexasubstituted benzene C(6)E(6). The ether tentacles (E = methoxymethyl) allow these cations to effect eta(1)-bonding to the benzene center in a manner strongly reminiscent of the classical sigma-arene complexes with positively charged electrophiles where Z(+) = CH(3)(+), Br(+), Cl(+), Et(3)Si(+), etc. The somewhat smaller potassium cation is involved in a similar M(+)...pi(arene) interaction that leads to eta(2)-bonding with the aromatic center in the pi-mode previously defined in the well-known series of silver(I)/arene complexes. We can find no evidence for significant Na(+)... pi(arene) interaction under essentially the same conditions. As such, the sigma-structure of the Rb(+) and Cs(+) complexes and pi-structure of the K(+) complex are completely integrated into the continuum of sigma-pi bondings of various types of electrophilic (cationic) acceptors with arene donors that were initially identified by Mulliken as charge-transfer.     

Intermolecular C—H...O and C—H...X interactions in substituted spiroacenaphthylene structures

In the three spiroacenaphthylene structures 5′′‐[(E)‐2,3‐dichlorobenzylidene]‐7′‐(2,3‐dichlorophenyl)‐1′′‐methyldispiro[acenaphthylene‐1,5′‐pyrrolo[1,2‐c][1,3]thiazole‐6′,3′′‐piperidine]‐2,4′′‐dione, C₃₅H₂₆Cl₄N₂O₂S, (I), 5′′‐[(E)‐4‐fluorobenzylidene]‐7′‐(4‐fluorophenyl)‐1′′‐methyldispiro[acenaphthylene‐1,5′‐pyrrolo[1,2‐c][1,3]thiazole‐6′,3′′‐piperidine]‐2,4′′‐dione, C₃₅H₂₈F₂N₂O₂S, (II), and 5′′‐[(E)‐4‐bromobenzylidene]‐7′‐(4‐bromophenyl)‐1′′‐methyldispiro[acenaphthylene‐1,5′‐pyrrolo[1,2‐c][1,3]thiazole‐6′,3′′‐piperidine]‐2,4′′‐dione, C₃₅H₂₈Br₂N₂O₂S, (III), the substituted aryl groups are 2,3‐dichloro‐, 4‐fluoro‐ and 4‐bromophenyl, respectively. The six‐membered piperidine ring in all three structures adopts a half‐chair conformation, the thiazolidine ring adopts a slightly twisted envelope and the pyrrolidine ring an envelope conformation; in each case, the C atom linking the rings is the flap atom. In all three structures, weak intramolecular C—H...O interactions are present. The crystal packing is stabilized through a number of intermolecular C—H...O and C—H...X interactions, where X = Cl in (I) and F or S in (II), and C—H...O interactions are observed predominantly in (III). In all three structures, molecules are linked through centrosymmetric ring motifs, further tailored through a relay of C—H...X [Cl in (I), Br in (II) and O in (III)] interactions.     

Highly stereoselective asymmetric Pummerer reactions that incorporate intermolecular and intramolecular nonbonded S...O interactions

New chiral sulfoxides (R(S),S)-3, (S(S),S)-3, (R(S),S)-4, and (S(S),S)-4 and known chiral sulfoxides (R(S))-5, (R(S))-6, and (R(S))-7 were synthesized, and the stereochemistry of the new sulfoxides (R(S),S)-3 and (R(S),S)-4 was determined by X-ray crystallographic analysis. In their crystallographic structures, the intramolecular nonbonded S...O close contacts were recognized. Analyses of several sulfoxide complexes including rac-11 with N,N-dimethylacetamide (DMAC) or N-methyl-2-pyrrolidone (NMP) in a MeOH solution utilizing cold-spray ionization mass spectrometry provided, for the first time, direct information for intermolecular nonbonded S...O interactions between sulfoxides and amide (or lactam) in a solution. Highly diastereoselective and enantioselective Pummerer reactions based on the concept of intermolecular and intramolecular nonbonded S...O interactions were performed by treatment of several chiral sulfoxides (R(S), S)-3, (S(S), S)-3, (R(S), S)-4, (S(S), S)-4, (R(S))-5, (R(S))-6, and (R(S))-7 with acetic anhydride and trimethylsilyl triflate (TMSOTf) in DMAC, NMP, N,N-dimethylformamide, and N-formylpiperidine. Mechanistic studies on these facile stereoselective Pummerer reactions revealed the necessity for the amide/TMSOTf complex, such as 26 or 27, to be an efficient activation reagent for Ac(2)O and a trapping reagent for the released acetate ion, and that DMAC and NMP had a positive effect on this highly stereoselective chiral transfer reaction.     

Synthesis and antibacterial activity of new 1beta-methylcarbapenems having the potential for intramolecular nonbonded S...O interactions.

Mercaptoacetyliminothiadiazoline derivatives (19, 20) useful for the pendant moiety of 1beta-methylcarbapenem antibiotics were efficiently synthesized. Acetyl derivative (18) of 20 was submitted to X-ray analysis, and a significant nonbonded S...O close contact was recognized in the crystallographic structure. New 1beta-methylcarbapenems (5, 6) were synthesized by exploiting 19 and 20, and exhibited considerable antibacterial activities in vitro.     

Small charged rings. XIV. Dimer formation through 2-arylaziridinium salts

2,5-Diary 1-substituted N,N,.N',N' -lelramethylpiperazinium diperchlorates have been synthesized in two steps: condensation of an aromatic aldehyde with dimethylamine perchlorate to give the corresponding N,N-dimelhylaralkylideneiminium perehlorate, followed by reaction with diazo-methane. Nmr evidence was obtained for the intermediate in the second step being the corresponding 2-aryl-1, 1-dimethylaziridinium perchlorate.     

Raman spectroscopic evidence for cooperative C-H...O interactions in the acetaldehyde-CO2 complex

In carbonyl compounds having a hydrogen atom attached to the alpha-carbon or directly to the carbonyl carbon, our recent ab initio and solvation studies have predicted the presence of a weak C-H...O interaction with CO2. This intermolecular interaction acts cooperatively with the Lewis acid-Lewis base interaction that exists between CO2 and the carbonyl group. This communication provides the first experimental evidence for this cooperative interaction in the acetaldehyde-CO2 complex using Raman spectroscopy at 25.0 degrees C in the gas phase. The implications of these interactions in the solvation of carbonyl-based CO2-philes are also discussed.     

[Mo12S12O12(OH)12(H2O)6]: A Cyclic Molecular Cluster Based on the [Mo2S2O2]2+ Building Block

The pH-dependent self-condensation of the [Mo ₂ S ₂ O ₂ ] ²⁺ complex fragment gives the wheellike Mo₁₂ cluster depicted on the right (ball-and-stick model; large balls: S, medium balls: O, small balls: Mo). Applying this synthetic strategy to other starting materials could provide access to other polyoxothiometalates with well-defined cavities.     

Statistical and theoretical investigations on the directionality of nonbonded S...O interactions. Implications for molecular design and protein engineering

Weak nonbonded interactions between a divalent sulfur (S) atom and a main-chain carbonyl oxygen (O) atom have recently been characterized in proteins. However, they have shown distinctly different directional propensities around the O atom from the S...O interactions in small organic compounds, although the linearity of the C-S...O or S-S...O atomic alignment was commonly observed. To elucidate the observed discrepancy, a comprehensive search for nonbonded S.O interactions in the Cambridge Structural Database (CSD) and MP2 calculations on the model complexes between dimethyl disulfide (CH(3)SSCH(3)) and various carbonyl compounds were performed. It was found that the O atom showed a strong intrinsic tendency to approach the S atom from the backside of the S-C or S-S bond (in the sigma(S) direction). On the other hand, the S atom had both possibilities of approach to the carbonyl O atom within the same plane (in the n(O) direction) and out of the plane (in the pi(O) direction). In the case of S...O(amide) interactions, the pi(O) direction was significantly preferred as observed in proteins. Thus, structural features of S...O interactions depend on the type of carbonyl groups involved. The results suggested that S.O interactions may control protein structures to some extent and that the unique directional properties of S...O interactions could be applied to molecular design.     

Some Cyclic Oligopeptide with S2n Symmetry

Some cyclic oligopeptides formed by an equal number of alternating D- and L-amino-acid residues have been synthesized by using the hydrochloride of the open-chain peptide acid as precursor and the mixed-anhydride condensation method. The cyclic oligopeptides (tetra-, hexa-, and octavaline, hexaleucine, and hexaphenylalanine) form very stable H-bonded structures (IR-amide band at 3270–3290 cm^?1) which are insoluble in common organic solvents. In CF₃COOH/CDCI₃ (25°), they yield ¹H-NMR spectra snowing the expected equivalency of the various amino-acid residues.     

Molecular structures of compounds formed by benzo-15-crown-5 with calcium salts

X-ray structural and spectroscopic results are given on the compound formed by benzo-15-crown-5 with calcium perchlorate, Ca(ClO₄)₂·C₁₄H₂₀O₅·2H₂O; the combination does not involve any substantial change in the dihedral angles in the macrocycle, as the coordination sphere is constructed as a result of supplementing the positions occupied by the macrocycle oxygen atoms with three other atoms (oxygen atoms from the perchlorate group and two water molecules). The results are compared with published data on the structures of the compounds formed by benzo-15-crown-5 with NaClO₄, Mg(NCS)₂, CuCl₂, Ca(NCS)₂ and Ca(3,5-dinitrobenzoate)₂.Translated from Teoreticheskaya i Éksperimental' naya Khimiya, Vol. 24, No. 2, pp. 242–247, March–April 1988.     

Novel [2]catenane structures introducing communication between transition metal centers via pi...pi interactions

[2]Catenane systems containing copper(II) and nickel(II) as metal centers have been self-assembled using tetraazamacrocyclic complexes and benzo-24-crown-8 as building blocks. A variety of methods, including X-ray crystallography, ESI mass spectrometry, (13)C and (1)H NMR, and electrochemistry, were applied to characterize these new face-to-face bismacrocyclic systems. Weak pi...pi interactions introduced by interlocking transition metal complexes with benzocrown moieties were shown to increase the communication (cooperativity) of metal centers. Introduction of the benzocrown increases the stability of the mixed valence state of the macrocyclic complex, which is reflected in high values of conproportionation constants. Moreover, this effect was found to be stronger than that obtained by shortening the length of the spacer between the two tetraazamacrocyclic subunits in the parent bismacrocycles. The extent of communication is larger for the nickel catenane than for the copper one.