Probing folded and unfolded states of outer membrane protein a with steady-state and time-resolved tryptophan fluorescence

Steady-state and time-resolved fluorescence measurements on each of five native tryptophan residues in full-length and truncated variants of E. coli outer-membrane protein A (OmpA) have been made in folded and denatured states. Tryptophan singlet excited-state lifetimes are multiexponential and vary among the residues. In addition, substantial increases in excited-state lifetimes accompany OmpA folding, with longer lifetimes in micelles than in phospholipid bilayers. This finding suggests that the Trp environments of OmpA folded in micelles and phospholipid bilayers are different. Measurements of Trp fluorescence decay kinetics with full-length OmpA folded in brominated lipid vesicles reveal that W102 is the most distant fluorophore from the hydrocarbon core, while W7 is the closest. Steady-state and time-resolved polarized fluorescence measurements indicate reduced Trp mobility when OmpA is folded in a micelle, and even lower mobility when the protein is folded in a bilayer. The fluorescence properties of truncated OmpA, in which the soluble periplasmic domain is removed, only modestly differ from those of the full-length form, suggesting similar folded structures for the two forms under these conditions.     

Picosecond protein response to the chromophore isomerization of photoactive yellow protein: selective observation of tyrosine and tryptophan residues by time-resolved ultraviolet resonance Raman spectroscopy

Picosecond time-resolved ultraviolet resonance Raman (UVRR) spectra of photoactive yellow protein (PYP) were measured. UVRR bands attributed to the vibration of tyrosine and tryptophan residues showed a spectral change upon photoreaction. It was found that the hydrogen-bond strength between the chromophore and Y42 increases in the pG* state. The ultrafast change in the tryptophan band revealed that a photoinduced structural change of the chromophore had propagated to the W119 region, located 12 A from the chromophore, within picoseconds.     

Structural studies of the interactions of normal and abnormal human plasmins with bovine basic pancreatic trypsin inhibitor

Catalytic activity of human plasmin is inhibited by bovine basic pancreatic trypsin inhibitor (BPTI, also known as aprotinin). In spite of increased interest in the function of BPTI as an inhibitor of plasmin, the 3-D structure of the plasmin-BPTI complex has not yet been determined. Therefore, in the present paper, the structure of the plasmin-BPTI complex was constructed by the homology modeling method, which provided information about the high affinity of plasmin for BPTI. Moreover, normal mode analyses of free plasmin, free BPTI and the plasmin-BPTI complex were carried out to investigate the changes in dynamics following complex formation. After study of the plasmin-BPTI interaction, we also investigated the binding of BPTI with abnormal plasmin, theoretically and experimentally. The result showing that BPTI binds to abnormal plasmin in the same way as it does to normal plasmin supports the previous finding that the difference between normal and abnormal plasmins is very small and that the abnormality is localized to the catalytic site.     

A new ligand and its complex with multi-stimuli-responsive and aggregation-induced emission effects

A new ligand containing tetraphenylethylene and terpyridine moieties, and its zinc ion complex were synthesized. Both of them exhibit an aggregation-induced emission effect. Their colors and emissions can be smartly switched by various external stimuli including grinding, heating and solvent-fuming, as well as exposure to acid and base vapors.     

The primary photophysics of the Avena sativa phototropin 1 LOV2 domain observed with time-resolved emission spectroscopy

The phototropins are blue-light receptors that base their light-dependent action on the reversible formation of a covalent bond between a flavin mononucleotide (FMN) cofactor and a conserved cysteine in light, oxygen or voltage (LOV) domains. The primary reactions of the Avena sativa phototropin 1 LOV2 domain were investigated by means of time-resolved and low-temperature fluorescence spectroscopy. Synchroscan streak camera experiments revealed a fluorescence lifetime of 2.2 ns in LOV2. A weak long-lived component with emission intensity from 600 to 650 nm was assigned to phosphorescence from the reactive FMN triplet state. This observation allowed determination of the LOV2 triplet state energy level at physiological temperature at 16600 cm(-1). FMN dissolved in aqueous solution showed pH-dependent fluorescence lifetimes of 2.7 ns at pH 2 and 3.9-4.1 ns at pH 3-8. Here, too, a weak phosphorescence band was observed. The fluorescence quantum yield of LOV2 increased from 0.13 to 0.41 upon cooling the sample from 293 to 77 K. A pronounced phosphorescence emission around 600 nm was observed in the LOV2 domain between 77 and 120 K in the steady-state emission.     

Characterization of the arc cathode attachment by emission spectroscopy and comparison to theoretical predictions

Emission spectroscopic diagnostics of electron temperature distribution and electron number density distribution in the cathode region have been carried out employing an OMA/spectrometer system. Single color and two color pyrometry of cathode temperature distributions have also been performed. The experimental results are compared with results of a theoretical model formulated previously to study the arc cathode interaction.The results show that the plasma in the cathode region strongly deviates from LTE. Thermionic cooling is the major cooling mechanism of cathodes at high arc currents. The work function of 2% thoriated tungsten cathodes increases during arcing due to fast evaporation of thorium from 2% thoriated tungsten cathodes.     

Characterization of laser induced plasmas by optical emission spectroscopy: A review of experiments and methods

Advances in characterization of laser induced plasmas by optical emission spectroscopy are reviewed in this article. The review is focused on the progress achieved in the determination of the physical parameters characteristic of the plasma, such as electron density, temperature and densities of atoms and ions. The experimental issues important for characterization by optical emission spectroscopy, as well as the different measurement methods are discussed. The main assumptions of the methods, namely the optical thin emission of spectral lines and the existence of local thermodynamic equilibrium in the plasma are evaluated. For dense and inhomogeneous sources of radiation such as laser induced plasmas, the characterization methods are classified in terms of the optical depth and the spatial resolution of the emission used for the measurements. The review deals firstly with optically thin spatially integrated measurements. Next, local measurements and characterization in not optically thin conditions are discussed. Two tables are included that provide reference to the works reporting measurements of electron density and temperature of laser induced plasmas generated with diverse samples.     

Temperature dependence of J-band aggregate of the dye 1,1′-diethyl-2,2′-cyanine bromide studied by steady-state and time-resolved picosecond fluorescence spectroscopy

Steady-state and time-resolved picosecond fluorescence spectra of the J-band aggregate state of the dye 1,1′-diethyl-2,2′-cyanine bromide were measured at different temperatures. When the temperature was lowered below 210 K, two narrow bands centered at 572 and 577 nm appeared in the absorption and fluorescence spectra arising from the formation of the J aggregate. The time-resolved fluorescence study showed that the relaxation decay time of the J-band was ≈ 20 ps while that of the monomer band was ≈ 300 ps.     

Affinity chromatography study of the interaction of ribonucleotides with bovine pancreatic ribonuclease covalently bound to Sepharose 4B

The preparation of immobilized bovine pancreatic ribonuclease by covalent attachment to Sepharose 4B, with and without a spacer arm, is described. The coupling reaction was carried out at two different pH values, 8.5 and 10.5, and the different kinetic properties shown by the resulting preparations probably reflect the influence of the particular amino acid side-chains involved in the covalent coupling of the enzyme to the insoluble matrix. The strength of binding of mononucleotides, at 4 degrees C, as deduced from the salt concentration at which they are eluted from an immobilized RNAase column, follows the order 5'-GMP greater than 5'-AMP greater than 3'-UMP greater than 3'-CMP. When binary mixtures of a 3'-pyrimidine nucleotide and a 5'-purine nucleotide are chromatographed jointly, a co-operative effect is found and the elution of either or both ligands is retarded. This behaviour can be explained in terms of the preferential binding of each kind of nucleotide to different sub-sites in the enzyme. The stoichiometry and association constant for 3'-CMP and 5'-AMP at pH 7.0 were also determined.     

Hexamerization of the bacteriophage T4 capsid protein gp23 and its W13V mutant studied by time-resolved tryptophan fluorescence

The bacteriophage T4 capsid protein gp23 was studied using time-resolved and steady-state fluorescence of the intrinsic protein fluorophore tryptophan. In-vitro gp23 consists mostly of monomers at low temperature but forms hexamers at room temperature. To extend our knowledge of the structure and hexamerization characteristics of gp23, the temperature-dependent fluorescence properties of a tryptophan mutant (W13V) were compared to those of wild-type gp23. The W13V mutation is located in the N-terminal part of the protein, which is cleaved off after prohead formation in the live bacteriophage. Results show that W13 plays a role in the hexamerization process but is not needed to stabilize the hexamer once it is formed. Furthermore, besides the monomer-to-hexamer temperature transition (15-23 degrees C and 12-43 degrees C for wild-type and W13V gp23, respectively), we were able to observe denaturation of the N-terminus in hexameric wild-type gp23 around 40 degrees C. In addition, with the aid of a recently published homology model of gp23, the lifetimes obtained from time-resolved fluorescence measurements could tentatively be assigned to specific tryptophan residues.     

Gas-phase binding of non-covalent protein complexes between bovine pancreatic trypsin inhibitor and its target enzymes studied by electrospray ionization tandem mass spectrometry

The potential of electrospray ionization (ESI) mass spectrometry (MS) to detect non-covalent protein complexes has been demonstrated repeatedly. However, questions about correlation of the solution and gas-phase structures of these complexes still produce vigorous scientific discussion. Here, we demonstrate the evaluation of the gas-phase binding of non-covalent protein complexes formed between bovine pancreatic trypsin inhibitor (BPTI) and its target enzymes over a wide range of dissociation constants. Non-covalent protein complexes were detected by ESI-MS. The abundance of the complex ions in the mass spectra is less than expected from the values of the dissociation constants of the complexes in solution. Collisionally activated dissociation (CAD) tandem mass spectrometry (MS/MS) and a collision model for ion activation were used to evaluate the binding of non-covalent complexes in the gas phase. The internal energy required to induce dissociation was calculated for three collision gases (Ne, Ar, Kr) over a wide range of collision gas pressures and energies using an electrospray ionization source. The order of binding energies of the gas-phase ions for non-covalent protein complexes formed by the ESI source and assessed using CAD-MS/MS appears to differ from that of the solution complexes. The implication is that solution structure of these complexes was not preserved in the gas phase.     

The reaction products of the 193 nm photolysis of vinyl bromide and vinyl chloride studied by time-resolved Fourier transform infrared emission spectroscopy

Time-resolved Fourier transform infrared (TRFTIR) emission spectroscopy has been used to study the 193 nm photolysis of vinyl bromide (C(2)H(3)Br) and vinyl chloride (C(2)H(3)Cl). Time-resolved IR emission was analysed to obtain nascent vibrational state populations of two primary photolysis products: HBr (v = 1-7) and HCl (v = 1-6). In both cases the nascent vibrational state populations monotonically decrease with increasing v and are in excellent agreement with previously published data. Time-resolved populations were analysed to yield rate constants for vibrational relaxation of HBr (v = 1-3) and HCl (v = 1-4) by parent vinyl bromide and vinyl chloride, respectively. In both cases the rate constants were found to increase with increasing vibrational quantum number, in agreement with a single quantum de-excitation via vibrational to vibrational energy transfer. Butadiene (C(4)H(6)) was identified as a secondary product of the photolysis of both vinyl halides, and shown to be formed from the reaction of parent vinyl halide with the vinyl radical. The presence of a buffer gas was found to produce a strong emission feature centred at 2,200 cm(-1), the intensity of which was dependent on the pressure of the buffer gas used, and whose kinetics are indicative of a secondary reaction product. We propose that this emission is from the vibrational progression of the electronic transition A(0, v, 1) --> X(0, v, 2) in the secondary reaction product C(2)H, whose formation route is favoured by the presence of buffer gas.     

槲皮素-铝配合物的制备及其与BSA的结合作用

在甲醇溶液中合成了槲皮素-铝配合物(Que-Al),并用紫外-可见吸收光谱和红外光谱进行了表征;运用荧光光谱探讨了Que-Al与牛血清白蛋白(BSA)的相互作用;求得了结合常数KA和热力学参数△H、△G、和△S.结果表明,Que-Al对BSA具有荧光猝灭作用,其猝灭方式为动态猝灭;Que-Al与BSA之间的作用力主要为疏水作用力.     

Structure of pravastatin and its complex with sodium dodecyl sulfate micelles studied by NMR spectroscopy

The aim of this work was to study the mechanisms of interaction between pravastatin and cell membranes using model membranes (sodium dodecyl sulfate micelles) by nuclear magnetic resonance spectroscopy methods. On the basis of the nuclear magnetic resonance experiments, it was established that pravastatin can form intermolecular complexes with sodium dodecyl sulfate micelles by the interaction of its hydrophilic groups with the polar surface of the micelle. Conformational features of pravastatin molecule were also studied. Copyright © 2014 John Wiley & Sons, Ltd.     

Direct observation of a sulfonyl azide excited state and its decay processes by ultrafast time-resolved IR spectroscopy

The photochemistry of 2-naphthylsulfonyl azide (2-NpSO(2)N(3)) was studied by femtosecond time-resolved infrared (TR-IR) spectroscopy and with quantum chemical calculations. Photolysis of 2-NpSO(2)N(3) with 330 nm light promotes 2-NpSO(2)N(3) to its S(1) state. The S(1) excited state has a prominent azide vibrational band. This is the first direct observation of the S(1) state of a sulfonyl azide, and this vibrational feature allows a mechanistic study of its decay processes. The S(1) state decays to produce the singlet nitrene. Evidence for the formation of the pseudo-Curtius rearrangement product (2-NpNSO(2)) was inconclusive. The singlet sulfonylnitrene (1)(2-NpSO(2)N) is a short-lived species (τ ≈ 700 ± 300 ps in CCl(4)) that decays to the lower-energy and longer-lived triplet nitrene (3)(2-NpSO(2)N). Internal conversion of the S(1) excited state to the ground state S(0) is an efficient deactivation process. Intersystem crossing of the S(1) excited state to the azide triplet state contributes only modestly to deactivation of the S(1) state of 2-NpSO(2)N(3).     

Molecular complexation of uracil with bovine serum albumin and its complex with bilirubin studied by spectroscopic methods

The interactions of uracil (U) with bovine serum albumin (BSA) and its complex with bilirubin (BR·BSA) in phosphate buffer at pH 7.4 were studied by fluorescence and electronic spectroscopy. The parameters of the resulting intermolecular complexes (binding constants, quenching rate constants, the radius of the quenching sphere-of-action, etc.) were determined. The interaction of BSA with U occurs through a static quenching of protein fluorescence and has a predominantly hydrophobic character. The effect of U on the conformational changes of the protein molecule was analyzed by synchronous fluorescence spectroscopy. Uracil binds to BR·BSA more efficiently than to the free protein due to the interaction of U with the tetrapyrrole pigment incorporated in the macromolecular complex.