Hydroxide ion adsorption on self-assembled monolayers

It is argued, on the basis of density functional calculations, that a self-assembled monolayer of oligo(ethylene glycol) or n-alkanes in contact with water will preferentially adsorb hydroxyl ions (either from autoionization of water or added to the solution) on both methoxy- and hydroxide-terminated endgroups, thus charging the surface region of the SAM negatively with an estimated charge density of about 1 microC/cm(2) in agreement with recent experiments. The negative charging can explain long-ranged forces between opposing SAM surfaces. On dense SAMs, hydroxyl ions are highly mobile. Hydronium ions can absorb by penetration into the SAM provided there is enough lateral space for their encapsulation. The important role of hydration is demonstrated by calculating the excess binding energy of adsorption using a Born-Haber cycle.     

Laser desorption ion trap mass spectrometry of self-assembled monolayers

It is demonstrated that laser desorption ion trap mass spectrometry (LD-ITMS) can be successfully applied to the chemical analysis of a monolayer of adsorbates on a solid surface. Negative ion spectra obtained from LD-ITMS of self-assembled monolayers adsorbed from solutions of alkanethiols (CH₃(CH₂)_nSH with N = 5, 9, and 15) onto polycrystalline gold surfaces displayed clear ion peaks corresponding to the sulfonate adsorbate species. Sulfonate ions with the general formula CH₃(CH₂)_nSO⁻₃ were detected at m/z 165, 221, and 305, respectively, and were derived from the partial oxidation of the corresponding alkanethiol self-assembled monolayers. Little fragmentation and no clustering was observed in these mass spectra. These results indicate that the sensitivity of LD-ITMS is sufficient to allow its application to a wide array of problems in surface science.     

Light emission from sputtered aluminum atoms and ions produced by ion bombardment

Photon emission originating from sputtering of a polycrystalline aluminum surface under 1–10 keV ion (H⁺, He⁺, Ar⁺, Kr⁺ and Xe⁺) bombardment has been studied. Measured photon emission yields from the 3d ²D_3/2 resonance transition of sputtered excited Al atoms and calculated nuclear stopping powers are compared. The results demonstrate that elastic collisions play a major role in photon emission. Moreover, measurements of photon intensity as a function of the distance from the target surface show that decays of sputtered excited ions Al⁺ and Al²⁺ are faster than decays of excited Al atoms, and less affected by cascade repopulation and de-excitation of fast ions.     

Modification and stability of aromatic self-assembled monolayers upon irradiation with energetic particles

We have studied ion and electron irradiation of self-assembled monolayers (SAMs) of 2-(4'-methyl-biphenyl-4yl)-ethanethiol (BP2, CH3-C6H4C6H4CH2CH2-SH), phenyl mercaptan (PEM, C6H5CH2CH2-SH), and 4'-methyl-biphenyl-4-thiol (BP0, CH3-C6H4C6H4-SH) deposited on Au(111) substrates. Desorption of neutral particles from PEM/Au and BP2/Au was investigated using laser ionization in combination with mass spectrometry. The ion-induced damage of both BP2 and PEM SAMs is very efficient and interaction with a single ion leads to the modification of tens of molecules. This feature is the result of a desorption process caused by a chemical reaction initiated by an ion impact. Both for ions and electrons, experiments indicate that the possibility for scission of the Au-S bond strongly depends on the chemical nature of the SAM system. We attribute the possible origin of this effect to the orientation of the Au-S-C angle or adsorption sites of molecules. The analysis of electron-irradiated PEM/Au and BP2/Au, using ion-initiated laser probing, enabled measurements of the cross section for the electron-induced damage of the intact molecule or specific fragment. Analysis of electron-irradiated BP0/Au by using time-of-flight secondary ion mass spectrometry (TOF-SIMS) provides direct evidence for the quasi-polymerization process induced by electron irradiation.     

Chemical modification of fluorinated self-assembled monolayer surfaces by low energy reactive ion bombardment

Reactive collisions of low energy (<100-eV) mass-selected ions are used to chemically modify fluorinated self-assembled monolayer surfaces comprised of alkanethiolate chains CF₃(CF₂)₁₁(CH₂)₂S— bound to Au. Typical experiments were done by using 1-nA/cm² beams and submonolayer doses of reactant ions. Characterization of the modified surface was achieved by in situ chemical sputtering (60-eV Xe^+·) and by independent high mass resolution time-of-flight-secondary ionization mass spectrometry (TOF-SIMS) (15–25-keV, Ga⁺) experiments. Treatment with Si³⁵C1 ₄ ^+· produced a surface from which Xe⁺ sputtering liberated CF₂ ³⁵C1⁺ ions, which suggested Cl-for-F halogen exchange at the surface. Isotopic labeling studies that used Si³⁵Cl₂ ³⁷Cl ₂ ^+· ; and experiments with bromine-containing and iodine-containing projectiles, confirmed this reaction. High mass resolution TOF-SIMS spectra, as well as high spatial resolution images, provided further evidence as to the existence of halogen-exchanged species at the bombarded surface. Analogous Cl-for-F halogen substitution was observed in a model gas-phase reaction. The ion-surface reaction is suggested to proceed through an intermediate fluoronium ion in which the projectile is bonded to the target molecule. The most significant conclusion of the study is that selective chemical modification of monolayer surfaces can be achieved by using reactive ion beams, which lead to new covalent bonds at the surface and in the scattered ions.     

Mechanisms of secondary ion emission from self‐assembled monolayers and multilayers

Alkanethiol self‐assembled monolayers/multilayers (SAMs) have been applied as model organic systems with which to investigate secondary ion formation and emission processes during kiloelectronvolt ion bombardment. Self‐assembled monolayer and multilayer films of 11‐mercaptoundecanoic acid capped with 1‐dodecanethiol were prepared on gold‐coated substrates. Samples with varying number of thiolate layers were studied using static secondary ion mass spectrometry to investigate the origin of molecular secondary ions and the influence of surface chemistry and structure. The nature of the thiolate bonding affects the type and abundance of the observed ions. The intensity of atomic and cluster ions derived from the substrate decreases exponentially with increasing number of thiolate overlayers because of losses in transmission through the organic overlayers. Intact molecular and cluster ions can escape from >100 Å below the surface of these structures. The variation of molecular‐ion yields with multilayer thickness suggests that a significant proportion of molecular ions originate from subsurface thiolate layers. The detection of ions comprised species from the substrate or bottom of the multilayer associated with species from the top layer supports the view that chemical association at or near the surface is a viable mechanism of formation for molecular secondary ions. Copyright © 2005 John Wiley & Sons, Ltd.     

Impedimetric sensing of uranyl ion based on phosphate functionalized cysteamine self-assembled monolayers

A phosphate functionalized cysteamine self-assembled monolayer based on gold electrode is designed for uranyl ion (UO₂²⁺) detection. The response of the modified electrode is studied by electrochemical impedance spectroscopy (EIS) and cyclic voltammetry. The EIS data are approximated using constant phase element (CPE) model from which kinetic and analytical parameters are evaluated. Uranyl ion is recognized based on blocking effect against charge transfer between p-benzoquinone as a probe and the modified electrode. This effect is detected from linear variation of charge transfer resistance (R_ct) as a function of UO₂²⁺ concentration. From the analysis of the EIS data and approximated parameters, a method is developed for UO₂²⁺ determination based on impedimetric measurements.     

Characterization of self-assembled monolayers from lithium dialkyldithiocarbamate salts

We report the formation of self-assembled monolayers (SAMs) onto gold substrates by exposure to lithium dialkyldithiocarbamate salts [(Li+(R2DTC-), where R = n-propyl, n-butyl, n-octyl, n-decyl, n-dodecyl, or n-octadecyl] in ethanol or methylene chloride. The crystallinity and composition of the monolayers were assessed by polarized modulation infrared reflection absorption spectroscopy (PM-IRRAS), wettability was characterized by contact angles of water and hexadecane, thickness was measured by spectroscopic ellipsometry, and barrier properties determined by electrochemical impedance spectroscopy. While the shorter R2DTC-s formed monolayers with liquid-like packing, monolayers prepared from the longest R2DTC- (where R = n-octadecyl) exhibit similar thickness, crystallinity, wettability, and capacitance as monolayers prepared from n-octadecanethiol. The hydrocarbon chains within the monolayers prepared from (C18)2DTC- are less canted on average than those prepared from n-octadecanethiol. Nonetheless, the (C18)2DTC- SAM exhibits an order of magnitude lower resistance against the penetration of redox probes, which is attributed to a higher density of pinhole defect sites.     

Understanding the nonfouling mechanism of surfaces through molecular simulations of sugar-based self-assembled monolayers

This paper presents a molecular simulation study of the interactions of a protein (lysozyme) with self-assembled monolayers (SAMs) of mannitol and sorbitol terminated alkanethiols in the presence of explicit water molecules and ions. The all-atom simulations were performed to calculate the force generated on the protein as a function of its distance above the SAM surfaces. The structural and dynamic properties of water molecules both above the SAM surfaces and around the SAM head groups were analyzed to provide a better understanding of the nonfouling behavior of the sugar-based SAM surfaces. Results from this work suggest that both mannitol and sorbitol SAMs generate a tightly bound, structured water layer around the SAM chains. This hydration layer creates a repulsive force on the protein when it approaches the surface, resulting in a nonfouling surface despite the presence of hydrogen-bond donor groups. This work demonstrates the importance of strong surface-water interactions for surface resistance to nonspecific protein adsorption.     

Organic cluster ions from continuous-flow fast atom bombardment

Cluster ions from fast atom bombardment of liquid alcohols and nitriles were examined using a continuous-flow technique. Protonated molecular M_nH⁺ species are the dominant cluster ions observed in molecules of formula M. The abundances of the M_nH⁺ cluster ions decrease monotonically with increasing n, and within a homologous series the M_nH⁺ abundance diminishes more rapidly for higher molecular mass compounds. Reaction products (ROH)_n(H₂O)H⁺ and (ROH)_n(ROR)H⁺ are observed also in the case of alcohols, and the ion abundances decrease with increasing n. Radiation damage yields fragment ions and ionic alkyl reaction products which are captured in solvent clusters. Semi-empirical molecular orbital methods were used to examine the energetics of cluster ion formation and decomposition pathways. Metastable decomposition processes exhibit only evaporative loss of monomers, with the probability of loss increasing sharply with n. The evaporative ensemble model of Klots was used to predict the cluster size-dependent trends of metastable dissociation processes observed for alcohol and nitrile cluster ions.     

Grafted self-assembled monolayers derived from naturally occurring phenolic lipids

Self-assembled monolayers grafted onto silicon surfaces were obtained from the hydrosilylation products by trialcoxysilanes of naturally occurring phenolic lipid allyl ethers. The as-obtained materials were characterized by various physical and physicochemical methods. Thus, contact angles of water drops showed that they possess very high hydrophobicity. Their excellent regularity was corroborated by AFM microscopy. The frequencies of the stretching CH2 infrared modes indicate the presence of alkyl chains mainly in the trans/trans conformation. Additionally, optical ellipsometry and quartz microbalance measurements enabled us to estimate the thickness of the films. The results, as a whole, are in good agreement with the formation of densely packed monolayers.     

Odd-even effects in photoemission from terphenyl-substituted alkanethiolate self-assembled monolayers

Self-assembled monolayers (SAMs) formed from 4,4'-terphenyl-substituted alkanethiols C6H5(C6H4)2-(CH2)nSH (TPn, n = 1-6) on polycrystalline (111) gold and silver substrates have been characterized by synchrotron-based high-resolution X-ray photoelectron spectroscopy. The intensities, binding energy positions, and width of most photoemission lines exhibited pronounced odd-even effects, i.e., systematic and periodic variation, depending on either odd or even number of the methylene units in the aliphatic linker of the TPn molecules. The detailed analysis of these effects provides important information on the bonding and arrangement of the chemisorbed sulfur headgroups in the TPn films and balance of the structural forces in alkanethiolate SAMs.     

Alkanethiolate self-assembled monolayers as functional spacers to resist protein adsorption upon Au-coated nerve microelectrode

Alkanethiolate self-assembled monolayers (SAMs) of varied chain lengths were adsorbed upon Au-coated nerve microelectrodes and employed as protein-resistant spacers. The microelectrode spiraled as a cuff type can be used for restoring motor function via electrical stimulation on the peripheral nerve system; however, an increase of electrode impedance might occur during implantation. In this work, a thin-film SAMs treatment upon Au/polyimide (PI) surface of the microelectrode provided a hydrophobic characteristic, which retarded protein adsorption at the initial stage and subsequent pileup (or thickening) process. The protein-resistant effect exhibited comparable SAMs of different chain lengths adsorbed upon Au/PI surfaces. The increase of electrode impedance as a function of protein deposition time was mainly correlated with the addition of reactance that was associated with the pileup thickness of the deposited protein. Particularly, the SAMs-modified surface was capable to detach a significant portion of the accumulated protein from the protein-deposited SAMs/Au/PI, whereas the protein-deposited layers exhibited firm adhesion upon Au/PI surface. It is therefore very promising to apply thin-film SAMs adsorbed upon Au-coated surface for bioinvasive devices that have the need of functional electrical stimulations or sensing nerve signals during chronic implantation.     

Comparative investigations of the secondary ion emission of metal complexes under MeV and keV ion bombardment

A series of ionic and neutral Group VIII transition metal complexes with molecular masses up to 2500 u were analysed by time-of-flight secondary ion mass spectrometry (SIMS) and plasma desorption mass spectrometry (PDMS). The secondary ion emission, the secondary ion yields and the yield ratios Y(PDMS)/Y(SIMS) of 20 ionic and neutral metal complexes were determined. Both techniques generally provide both molecular and fragment ion information. Characteristic fragmentation patterns give useful data for structural characterization. Additionally, the stabilities of different secondary ion species were compared by their half-lives. Both PDMS and SIMS are very sensitive, yielding optimum spectra from total sample sizes as low as 5 nmol, and the sample consumption is negligible.     

Charge transport through polyene self-assembled monolayers from multiscale computer simulations

We combine first-principles density-functional theory with matrix Green's function calculations to predict the structures and charge transport characteristics of self-assembled monolayers (SAMs) of four classes of systems in contact with Au(111) electrodes: conjugated polyene chains (n = 4, 8, 12, 16, and 30) thiolated at one or both ends and saturated alkane chains (n = 4, 8, 12, and 16) thiolated at one or both ends. For the polyene SAMs, we find no decay in the current as a function of chain length and conclude that these 1-3 nm long polyene SAMs act as metallic wires. We also find that the polyene-monothiolate leads to a contact resistance only 2.8 times higher than that for the polyene-dithiolate chains, indicating that the device conductance is dominated by the properties of the molecular connector with less importance in having a second molecule-electrode contact. For the alkane SAMs, we observe the normal exponential decay in the current as a function of the chain length with a decay constant of beta(n) = 0.82 for the alkane-monothiolate and 0.88 for the alkane-dithiolate. We find that the contact resistance for the alkane-monothiolate is 12.5 times higher than that for the alkane-dithiolate chains, reflecting the extra resistance due to the weak contact on the nonthiolated end. These contrasting charge transport characteristics of alkane and polyene SAMs and their contact dependence are explained in terms of the atomic projected density of states.     

Carbon nanomembranes from self-assembled monolayers: Functional surfaces without bulk

In this topical review we describe the fabrication, characterization and applications of 1 nm thick, mechanically stable carbon nanomembranes (CNMs). They represent a new type of functional two-dimensional (2D) materials, which can be concisely described as “surfaces without bulk”. Because CNMs are made by electron-induced crosslinking of aromatic self-assembled monolayers (SAMs), we start with an overview of SAMs with a special emphasis on aromatic SAMs. We describe the chemical modification of SAMs by electron, ion and photon irradiation, introduce the concepts of irradiation-induced crosslinking and chemical nanolithography of aromatic SAMs and discuss the underlying physical and chemical mechanisms. We present examples for applications of these phenomena in the engineering of complex surface architectures, e.g., nanopatterns of proteins, fluorescent dyes or polymer brushes. Then we introduce a transfer procedure to release cross-linked aromatic SAMs from their original substrates and to form free-standing CNMs. We discuss mechanical and electrical properties of CNMs and demonstrate that they can be converted into graphene upon annealing. This transformation opens an original and flexible molecular route towards the large-scale synthesis of graphene sheets with tunable properties. Finally, we demonstrate the lithographic and chemical tailoring of CNMs to fabricate novel functional 2D carbon materials: supports for high resolution transmission electron microscopy (HRTEM) and nanolithography, nanosieves, Janus nanomembranes, polymer carpets, complex layered structures. Prospects of combining different types of nanomembranes made of SAMs (CNMs, graphene, nanosieves, Janus nanomembranes) towards the engineering of novel functional nanomaterials for a variety of electronic, optical, lab-on-a-chip and micro-/nanomechanical (MEMS/NEMS) devices are discussed.     

Organized self-assembled monolayers from organosilanes containing rigid pi-conjugated aromatic segments

The morphology of surfaces modified by pi-conjugated arylsilanes depends on various parameters such as the nature and the number of the hydrolyzable functions or the length of the aromatic segment. The grafting of phenyltrichlorosilane and phenyltrimethoxysilane leads to multilayers even when the reactions are carried out at 0 degrees C, the films obtained from phenyltrichlorosilane being much thicker than the one obtained from phenyltrimethoxysilane. A submonolayer is obtained using phenyltriethoxysilane. Whereas the trifunctional phenyltrichlorosilane forms an inhomogeneous multilayer, the difunctional phenyldichlorosilane (PhSiHCl2) and the monofunctional phenylchlorosilane (PhSiH2Cl) (the SiH bond is not reactive under these experimental conditions) deposit as dense homogeneous monolayers. For these two phenylchlorosilanes, the surface analytical data are similar except for contact angle measurements, which can be explained by a different orientation of the phenyl group at the surface. Concerning the influence of the length of the aromatic segment on the quality of the film, styryltrimethoxysilane and methylstilbenyltrimethoxysilane lead to dense monolayers indicating that adding a short group such as the vinyl group is sufficient to induce an organization between aromatic groups and to achieve a dense monolayer.     

Adsorption of sulfite oxidase on self-assembled monolayers from molecular dynamics simulations

Sulfite oxidase (SO) is an enzyme catalyzing the terminal step of the metabolism of sulfur-containing amino acids that is essential for almost all living organisms. The catalytic activity of SO in vertebrates strongly depends on the efficiency of the intramolecular electron transfer (IET) between the catalytic Moco domain and the cytochrome b5 (cyt b5) domain. The IET process is assumed to be mediated by large domain motions of the cyt b5 domains within the enzyme. Thus, the interaction of SO with charged surfaces may affect the mobility of the cyt b5 domain required for IET and consequently hinder SO activation. In this study, we present a molecular dynamics approach to investigating the ionic strength dependence of the initial surface adsorption of SO in two different conformations-the crystallographic structure and the model structure for an activated SO-onto mixed amino- and hydroxyl-terminated SAMs. The results show for both conformations at low ionic strengths a strong adsorption of the cyt b5 units onto the SAM, which inhibits the domain motion event required for IET. Under higher ion concentrations, however, the interaction with the surface is weakened by the negatively charged ions acting as a buffer and competing in adsorption with the cathodic cyt b5 domains. This competition prevents the immobilization of the cytochrome b5 units onto the surface, allowing the intramolecular domain motions favoring IET. Our predictions support the interpretation of recent experimental spectroelectrochemical studies on SO.