Hybridization of Long Pyridine‐Dicarboxamide Oligomers into Multi‐Turn Double Helices: Slow Strand Association and Dissociation,Solvent Dependence,and Solid State Structures

Oligoamides of 2,6‐diaminopyridine and 2,6‐pyridinedicarboxylic acid comprised of 5, 7, 9, 11, or 13 units and bearing 4‐isobutoxychains on all pyridine rings and tert‐butyl‐carbamate terminal groups have been synthesized stepwise, along with an 11 mer having benzyl‐carbamate terminal groups. The crystal structure of all five Boc‐terminated compounds has been obtained and shows a highly regular and conserved double helical hybridization motif of up to 3 complete turns for the 13 mer. Four pyridine units span one helical turn and define a helix pitch of ca 7 Å. Solution studies in CDCl₃ demonstrated that the Boc‐terminated oligomers strongly hybridize in this solvent, and that K_dim values increase with oligomer length. The K_dim values are 31000 and 7×10⁵ L mol^?1 for the 7 mer and the 9 mer, respectively, and are too high to be measured by NMR for the 11 mer and the 13 mer. Hybridization and dissociation kinetics at 2 mM proceed at decreasing rates upon increasing oligomer length. The rate was faster than minutes for the 7 mer, of the order of hours for the 9 mer, and days for the 11 mer and 13 mer. The same trend was observed in [D₅]pyridine but with considerably lower K_dim values and faster kinetics. The benzylcarbamate 11 mer was also found to hybridize into a double helix but with reduced K_dim values and faster kinetics compared to its Boc‐terminated analogue. Combined with previous studies, the results presented here frame a global understanding of the hybridization of these pyridinecarboxamide oligomers and provide useful guidelines for the design of other artificial double helices.     

Synthesis and Biological Evaluation of Some Heterocyclic Compounds from Salicylic Acid Hydrazide

Different heterocyclic compounds were prepared starting from 2‐hydroxy benzohydrazide; for example, cyclization of hydrazide hydrazone 3 derived from 2‐hydroxybenzohydrazide 2 with acetic anhydride or concentrated sulfuric acid gave 1,3,4‐oxadiazole derivatives 4 – 5 . On the other hand, direct cyclization of 2‐hydroxy benzohydrazide 2 with one carbon cyclizing agent gave a new derivative of 1,3,4‐oxadiazole 7 , 8 , 9 , 10 , 11 . Heating of hydrazide hydrazone 3 with thioglycolic acid in pyridine gave thiazolidinone 12 . When 2‐hydroxy benzohydrazide 2 reacted with aliphatic carboxylic acids such as formic acid or acetic acid, it gave the corresponding N‐formyl or N‐acetyl derivatives 6 . Subsequent cyclization of 6 using phosphorous pentasulphide in pyridine gave 1,3,4‐thiadiazoles 13 . Cyclization of 2‐hydroxy benzohydrazide with ethyl acetoacetate gives pyrazolone derivative 14 . Finally, when an ethanolic solution of acid hydrazide 2 was treated with ammonium thiocyanate in 35% HCl, it gave the thiosemicarbazide 15 . Subsequent treatment of 15 with concentrated sulfuric acid or 10% sodium hydroxide gave 5‐amino‐1,3,4‐thiadiazole 16 and 1,2,4‐triazole 17 , respectively. The structures of all newly isolated compounds were confirmed using ¹H NMR, IR spectra, and elemental analyses. The antimicrobial activities for all isolated compounds were examined against different microorganisms.     

Studies with Alkylheterocycles: Novel Synthesis of Functionally Substituted Isoquinoline and Pyridopyridines Derivatives

Several isoquinolines were prepared via reacting pyridine 4 with cinnamonitriles 5a‐c or 5d‐f . Treating 4 with elemental sulphur yielded thienopyridine 9. 9 reacts with acrylonitrile to give isoquinoline 12. 12 was also prepared from 4 and methylenemalononitrile. Condensation of 4 with aromatic aldehydes gave the arylidine 13. 13 afforded the pyridine 14 and 15 on treating it with NH₄OH and AcOH/HCl, respectively.     

Synthesis of regioisomeric 2,5‐bis‐substituted‐aza‐benzothiopyranoindazoles

The synthesis of 6‐chloro‐9‐nitro‐benzothiopyranopyridin‐5‐ones 2a, 2b and 2c has been accomplished. Chemotype 2d could not be prepared since attempts to cyclize 3‐(2‐nitro‐5‐chlorophenoxy)pyridine‐2‐carboxylic acid ( 1d ) led to the decarboxylation product 3‐(2‐nitro‐5‐chlorothiophenoxy) pyridine ( 40 ). Analogues 2a, 2b or 2c on treatment with the respectively substituted hydrazine led to the 2‐(substituted)‐5‐nitro 7, 8‐ or 9‐aza substituted chemotypes 3a‐7a, 8b , and 9c‐13c . The reduction of the nitro groups of these substrates was effected by treatment with hydrogen gas (palladium catalyst) or by stannous chloride to yield the 5‐amino chemotypes 15a‐18a, 20b and 21c‐24c , respectively. The conversion of these derivatives to the 2,5‐bis (alkylamino)‐7‐, 8‐ and 9‐aza benzothiopyranoindazoles listed in Table 3 was accomplished by direct alkylations, acylations, followed by reduction of the amido group with Red‐Al or lithium aluminum hydride, or by reductive alkylations in the presence of sodium cyanoborohydride. The removal of the protective BOC‐group was effected by treatment of the appropriate substrates with anhydrous hydrogen chloride to afford the respective hydrochloride salts listed in Table 4.     

Analysis of geometric parameters and packing considerations for triphenylboroxine derivatives,with tris(pentafluorophenyl)boroxine as an example

Molecules of the title compound [systematic name: 2,4,6‐(pentafluorophenyl)‐1,3,5,2,4,6‐trioxatriborinane], C₁₈B₃F₁₅O₃, are located on crystallographic twofold rotation axes which run through the boroxine and one of the pentafluorophenyl rings. The boroxine ring (r.m.s. deviation = 0.027 Å) and the pentafluorophenyl rings (r.m.s. deviations = 0.004 and 0.001 Å) are essentially planar. The dihedral angles between the boroxine and the two symmetry‐independent benzene rings are 8.64 (10) and 8.74 (12)°. The two benzene rings are mutually coparallel [dihedral angle = 0.80 (11)°]. The packing shows planes of molecules parallel to (01), with an interplanar spacing of 2.99 Å. Within these planes, all the molecules are oriented in the same direction, whereas in neighbouring planes the direction is inverted. Short B...F contacts of 3.040 (2) and 3.1624 (12) Å occur between planes. The geometric parameters of the boroxine ring in the title compound agree well with those of comparable boroxine structures, while the packing reveals some striking similarities and differences.     

Synthesis,characterization, and star polymer assembly of boronic acid end‐functionalized polycaprolactone

Boronic acid end‐functionalized polycaprolactone (PCL) polymers were synthesized by ring‐opening polymerization using a pinacol boronate ester‐containing (Bpin) initiator. The polymerization provides access to boron‐terminated polymers (i.e. Bpin‐PCL‐OH) with narrow molecular weight distributions (PDI = 1.09). Postsynthetic manipulation of the polymer's terminal hydroxyl group by copper‐catalyzed azide‐alkyne cycloaddition chemistry provides a series of bis end‐functionalized polymers with significant structural diversity at the termini. Deprotection of the boronate ester end group was accomplished with an acidic solid phase DOWEX resin. The boronate ester deprotection methodology does not result in hydrolysis of the polymeric backbone. The boronic acid‐tipped polymers were converted into star polymer assemblies using thermal dehydration and ligand‐facilitated trimerization. Thermal dehydration of (HO)₂B‐PCL‐OAc to the corresponding boroxine‐based star polymer assembly was inefficient and lead to degradation products. Ligand‐facilitated trimerization using either pyridine or 7‐azaindole as the Lewis base was efficient and mild. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2010     

Synthesis of Pentafluorophenyl‐ and Pyridinyl‐3 Allenes

The allenes 1,2,3,4,5‐pentafluoro‐6‐(3‐phenylpropa‐1,2‐dienyl)benzene 4 , 3‐(3‐phenylpropa‐1,2‐dienyl)pyridine 11 and 3‐(3‐(pyridine‐3‐yl)propa‐1,2‐dienyl)pyridine 17 and the acetylenes 5 , 12 and 16 were obtained by reduction of the corresponding propargylic acetates 3 , 10 and 15 by Samarium(II) iodide in the presence of Pd(0). Base‐promoted isomerisation of acetylene 12 provided allene 11 in a yield of 80%. 1‐(Pentafluorophenyl)‐3‐phenylprop‐2‐yn‐1‐ol 2 was prepared from phenylacetylene and pentafluorobenzaldehyde. The condensation of nicotinaldehyde with trimethylsilylacetylene gave the 3‐(trimethylsilyl)‐1‐(pyridine‐3‐yl)prop‐2‐yn‐1‐ol 7 . The removal of the silyl group of 7 to acetylene 8 was done in basic conditions. The Pd catalysed condensation of the acetylene 8 with iodobenzene gave 3‐phenyl‐1‐(pyridine‐3‐yl)prop‐2‐yn‐1‐ol 9 . The Pd catalysed condensation of 8 with 3‐bromopyridine gave the 1,3‐dipyridin‐3‐yl‐prop‐2‐yn‐1‐ol 14 . The propargylic alcohols 2 , 9 and 14 were converted to the acetates 3 , 10 and 15 with acetic anhydride‐pyridine.     

Synthesis and Antioxidant Activity of Some Novel Nicotinonitrile Derivatives Bearing a Furan Moiety

As a part of ongoing studies in developing new potent antioxidant agents, 2‐amino‐4‐(furan‐2‐yl)‐5,6‐dimethylnicotinonitrile 4 was utilized as a key intermediate for the synthesis of some new pyrimidines 5 and 11 , form (acet)amide 6 , 7 , urea and thiourea 9 , 10 , 1,8‐naphthyridines 12 , 13 , and 14 . Moreover, condensation of 4 with 5,5‐dimethyl‐1,3‐cyclohexanedione and cyclohexanone in ethanol furnished the pyridine derivatives 16 and 17 , respectively. Furthermore, refluxing of 4 with ethylenediamine in carbon disulfide afforded the 4,5‐dihydro‐1H‐imidazol‐2‐yl pyridine derivative 19 . In addition, refluxing of 4 with carbon disulfide and concentrated sulfuric acid furnished the pyridine derivatives 20 and 21 , respectively. The reaction of 4 with phenacyl chloride and ethyl chloroacetate in dimethylformamide in the presence of catalytic amount of triethylamine afforded the pyridine derivatives 22 and 23 , respectively. Finally, heating of 4 with 1‐phenyl‐3‐(piperidin‐1‐yl)propan‐1‐one hydrochloride in glacial acetic acid afforded phenylpropylamino pyridine derivative 24 . The structures of the newly synthesized compounds were confirmed by elemental analysis, IR, ¹H‐NMR, and mass spectral data. Representative compounds of the synthesized products were evaluated as antioxidant agents. Compounds 8 , 19 , and 22 are promising compounds.     

A Tale of Two Trimers from Two Different Worlds: A COF‐Inspired Synthetic Strategy for Pore‐Space Partitioning of MOFs

The introduction of a symmetry‐ and size‐matching pore‐partitioning agent in the form of either a molecular ligand, such as 2,4,6‐tri(4‐pyridinyl)‐1,3,5‐triazine ( tpt ), or a metal‐complex cluster, into the hexagonal channels of MIL‐88/MOF‐235‐type (the acs net) to create pacs ‐type (partitioned acs ) crystalline porous materials is an effective strategy to develop high‐performance gas adsorbents. We have developed an integrated COF–MOF coassembly strategy as a new method for pore‐space partitioning through the coassembly of [(M₃(OH)_1?x(O)_x(COO)₆] MOF‐type and [B₃O₃(py)₃] COF‐type trimers. With this strategy, the coordination‐driven assembly of the acs framework occurred concurrently and synergistically with the COF‐1‐type condensation of pyridine‐4‐boronic acid into a C₃‐symmetric trimeric boroxine molecule. The resulting boroxine‐based pacs materials exhibited dramatically enhanced gas‐sorption properties as compared to nonpartitioned acs ‐type materials and are among the most efficient NH₃‐sorption materials.     

Conversion of the Native 24‐mer Ferritin Nanocage into Its Non‐Native 16‐mer Analogue by Insertion of Extra Amino Acid Residues

Protein assemblies with high symmetry are widely distributed in nature. Most efforts so far have focused on repurposing these protein assemblies, a strategy that is ultimately limited by the structures available. To overcome this limitation, methods for fabricating novel self‐assembling proteins have received intensive interest. Herein, by reengineering the key subunit interfaces of native 24‐mer protein cage with octahedral symmetry through amino acid residues insertion, we fabricated a 16‐mer lenticular nanocage whose structure is unique among all known protein cages. This newly non‐native protein can be used for encapsulation of bioactive compounds and exhibits high uptake efficiency by cancer cells. More importantly, the above strategy could be applied to other naturally occurring protein assemblies with high symmetry, leading to the generation of new proteins with unexplored functions.     

Diazoniapentaphenes. Synthesis from pyridine‐2‐carboxaldehyde and structural verifications

Reactions of pyridine‐2‐carboxaldehyde (9) with α,α′‐dibromo‐o‐ and p‐xylenes led to the corresponding bis‐pyridinium aldehydes 10 and 14. These aldehydes were quite reactive and the respective hydrates 11 and 15 were also formed. Cyclization of 10 or 11 with 48% HBr led to 12 while cyclization with PPA followed by conversion to the bis tribromide and loss of bromine led to 1. Cyclization of 14 or 15 with 48% HBr led to 3. Attempts to react α,α′‐dibromo‐m‐xylene with pyridine‐2‐carboxaldehyde (9) were not successful for the preparation of the bis‐pyridinium aldehyde 13. The bis‐pyridinium acetals 4, 5 and 6 were prepared and cyclized to afford 1, 2 and 3 , respectively, by the previously reported procedures. The structures of 1 and 2 were verified by ¹H‐NMR and ¹³C‐NMR spectroscopy while that of 3 was confirmed by X‐ray analysis.     

The condensation of active methylene reagents with salicylaldehyde: Novel synthesis of chromene,azaanthracene, pyrano[3,4‐c]chromene and chromeno[3,4‐c]pyridine derivatives

On heating of the cyanoacetic acid cyclopentylidene hydrazide 1 with salicylaldehyde in the presence of bases the azaanthracene derivative 6 was formed. Also, reaction of 3 with malononitrile and ketones 10a,b afforded the pyrano[3,4‐c]chromene 9 and chromeno[3,4‐c]pyridine 11 respectively. A mechanism for these reactions is proposed.     

Reactivity of 3‐(benzothiazol‐2‐yl)‐3‐oxopropanenitrile: A facile synthesis of novel polysubstituted thiophenes

The reaction of 3‐(benzothiazol‐2‐yl)‐3‐oxopropanenitrile 1 with active methylene reagents 2a–d and sulfur afforded polysubstituted thiophenes 3a–c . The synthetic potential of the β‐enaminonitrile moiety in 3a was explored. The reaction of 3a with active methylene reagents 2a–e afforded thieno[2,3‐b]pyridine derivatives 6–8. Refluxing of 3a with acetic anhydride alone, with acetic anhydride/pyridine mixture, or with carbon disulfide in pyridine afforded the acetamido 9, thieno[2,3‐d]pyrimidine 10, and pyrimidinedithiol 11 derivatives, respectively. The pyrimidinedithiol 11 was alkylated smoothly with methyl iodide to give the bis(methylthio) derivative 12. Also, compound 3a reacted with trichloroacetonitrile to give the thieno[2,3‐d]pyrimidine derivative 14. Compound 3a reacted with triethyl orthoformate or formamide to give the ethoxymethylideneamino 15 and thieno[2,3‐d]pyridine 16, respectively. Compound 15 reacted with hydrazine to afford thieno[2,3‐d]pyridine 17, which reacted with various reagents such as chloroacetyl chloride, ethyl cyanoacetate, diethyl oxalate, or chloroethylformate to give 1,2,4‐triazolo[1,5:1,6]pyrimidino‐[4,5‐b]thiophene derivatives 18a–c and 19, respectively. © 2000 John Wiley & Sons, Inc. Heteroatom Chem 11:94–101, 2000     

Homologous SNV Reaction: Synthesis of l‐Methyl‐4‐[4′‐phenylsulfonyl‐1′,3′‐butadienyl]pyridinium Iodide and Its Reactivity with Thiol Groups Giving Rise to the Chromophoric Thioether

Thioether 4‐[(1′E,3′E)‐4′‐phenylsulfanyl‐1,3′‐butadienyl]pyridine 8 and sulfone 4‐(4′‐phenylsulfonyl‐1′,3′‐butadienyl)pyridine 14 were prepared by reaction of the carbanions derived from allylic thioether or allylic sulfone with isonicotinaldehyde. The reaction with the sulfonyl carbanion occurred at the α position and on heating the alcolate gave the dienic sulfone 14 . The corresponding pyridinium iodide 10 and 15 were prepared by reaction with methyl iodide, respectively, on pyridine derivates 8 and 14 . The dienic pyridinium thioether 10 showed a long wavelength absorption band centered at 420 nm. The reaction of dienic pyridinium sulfone 15 with thiophenol gave the dienic pyridinium thioether 10 by a nucleophilic vinylic substitution. The reaction of sulfone 15 with glutathione was of second order and the rate constant was 8.5 M^?1s^?1 at 30°C and pH 7, about 500 times smaller than the rate constant observed with (E)‐1‐methyl‐4‐(2‐methylsulfonyl‐1‐ethenyl)pyridinium iodide 1 . The dienic pyridinium thioether 10 was a negative solvatochrome.     

Synthesis of Novel Pyridothienopyrimidines,Pyridothienopyrimidothiazines, Pyridothienopyrimidobenzthiazoles and Triazolopyridothienopyrimidines

The reaction of 3‐amino‐4,6‐dimethylthieno[2,3‐b]pyridine‐2‐carboxamide (1a) or its N‐aryl derivatives 1b‐d with carbon disulphide gave the pyridothienopyrimidines 2a‐d , whilst when the same reaction was carried out using N¹‐arylidene‐3‐amino‐4,6‐dimethylthieno[2,3‐b]pyridine‐2‐carbohydrazides (1e‐h) , pyridothienothiazine 3 was obtained. Also, refluxing of 1b‐d with acetic anhydride afforded oxazinone derivative 4 . Compounds 2a and 2b‐d were also obtained by the treatment of thiazine 3 with ammonium acetate or aromatic amines, respectively. When compound 2a was allowed to react with arylidene malononitriles or ethyl α‐cyanocinnamate, novel pyrido[3″,2″:4′,5′]thieno[3′,2′:4,5]pyrimido[2,1‐b][1,3] thiazines 5a‐c were obtained. Treatment of 2b‐d with bromine in acetic acid furnished the disulphide derivatives 6a‐c . U.V. irradiation of 2b‐d resulted in the formation of pyrido[3″,2″:4′,5′]thieno[3′,2′:4,5]pyrimido[2,1‐b]benzthiazoles 7a‐c . The reaction of 2a‐d with some halocarbonyl compounds afforded the corresponding S‐substituted thiopyrido thienopyrimidines 8a‐j . Compound 8b was readily cyclized into the corresponding thiazolo[3″,2″‐a]‐pyrido[3′,2′:4,5]thieno[3,2‐d]pyrimidine 9 upon treatment with conc. sulphuric acid. Heating of 2a,b with hydrazine hydrate in pyridine afforded the hydrazino derivatives 11a,b . Reaction of ester 8c with hydrazine hydrate in ethanol gave acethydrazide 10 . Compounds 10 and 11a,b were used as versatile synthons for other new pyridothienopyrimidines 12–15 as well as [1,2,4] triazolopyridothienopyrimidines 16–19.     

Furopyridines. XVII . Cyanation,chlorination and nitration of furo[3,2-b]pyridine N-oxide

The N-oxide 2 of furo[3,2-b]pyridine ( 1 ) was cyanated by the Reissert-Henze reaction with potassium cyanide and benzoyl chloride to give 5-cyano derivative 3 , which was converted to the carboxamide 4 , carboxylic acid 5 , ethyl ester 6 and ethyl imidate 8 . Chlorination of 2 with phosphorus oxychloride yielded 2-9a , 3- 9b , 5- 9c and 7-chloro derivative 9d . Reaction of 9d with sodium methoxide, pyrrolidine, N,N-dimethylformamide and ethyl cyanoacetate afforded 7-methoxy- 10 , 7-(1-pyrrolidyl)- 11 and 7-dimethylaminofuro[3,2-b]pyridine ( 14 ) and 7-(1-cyano-1-ethoxy-carbonyl)methylene-4,7-dihydrofuro[3,2-b]pyridine ( 12 ). Nitration of 2 with a mixture of fuming nitric acid and sulfuric acid gave 2-nitrofuro[3,2-b]pyridine N-oxide ( 15 ).     

Copolyesters of isosorbide,succinic acid,and isophthalic acid: Biodegradable,high Tg engineering plastics

Isosorbide, succinyl chloride and isophthaloyl chloride are polycondensed under various reaction conditions. The heating in bulk with or without catalysts as well in an aromatic solvent without catalyst, and polycondensation with the addition of pyridine only yield low molar mass copolyesters. However, heating in chlorobenzene with addition of SnCl₂ or ZnCl₂ produces satisfactory molar masses. The number average molecular weights (M_n) of most copolyesters fall into the range of 7000–15,000 Da with polydispersities (PD) in the range of 3–9. The MALDI‐TOF mass spectra almost exclusively displayed peaks of cyclics indicating that the chain growth was mainly limited by cyclization and not by side reactions, stoichiometric imbalance or incomplete conversion. The glass‐transition temperatures increased with the content of isophthalic acid from 75 to 180 °C and the thermo‐stabilities also followed this trend. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2013, 51, 2464–2471     

Microwaves in organic synthesis: Synthesis of pyridazinones,phthalazinones and pyridopyridazinones from 2‐oxo‐arylhydrazones under microwave irradiation

The phenylhydrazones 1a‐d condensed with ethyl cyanoacetate to yield pyridazinones 2a‐d that reacted with sulphur in presence of piperidine to yield the aminothienopyridazineones 3a,b that reacted with electron poor olefins and acetylenes to yield phthalazines 10‐12. The condensed aminothiophenes 3a,b reacted with dimethylformamide dimethylacetal to yield amidines 13a,b. Compounds 2a,b condensed with dimethylformamide dimethylacetal to yield the trans enamines 16a,b that cyclized readily into the pyridopyridazinones 17a,b on treatment with ammonium acetate in presence of acetic acid. Compounds 2a‐d reacted also with benzylidenemalononitrile to yield the phthalazinones 21a‐d. The reactions were conducted both by microwave heating and conventional heating. Better yields in much shorter reaction times were achieved by microwave heating.     

Assembly of heteropoly acid nanoparticles in SBA-15 and its performance as an acid catalyst

Keggin‐type 12‐tungstophosphoric acid (TPA) nanocrystals have been assembled inside the pores of mesoporous silica through a vacuum impregnation method by using large‐pore SBA‐15 as a nanoreactor. The product was characterized by Brunauer–Emmet–Teller particle size distribution (BET‐PSD), NMR and FT‐IR spectroscopy, X‐ray diffraction (XRD), tranmsission electron microscopy (TEM), differential thermal analysis (DTA) and FT‐IR of adsorbed pyridine. The experimental results illustrate that the TPA nanocrystals are excellent Brønsted acid catalytic materials at room temperature.     

Synthesis and Characterization of 2,7‐Linked Carbazole Oligomers

A set of monodisperse 2,7‐linked carbazole oligomers (3‐mer, 5‐mer, 7‐mer, and 9‐mer) was synthesized, and their photophysical, electrochemical, and thermal properties were investigated. In solutions, these oligomers exhibited bright blue emission with almost quantitative fluorescence quantum yield. The emission spectra of these oligomers in films are quite different. 3‐Mer and 5‐mer exhibited featureless emission spectra, whereas 7‐mer and 9‐mer showed well‐resolved emission spectra.