Mycoepoxydiene核磁共振谱的理论研究

用密度泛涵理论(Density Functional Theory,DFT)的B3PW 91方法在6-311G**基组下优化了标题化合物mycoepoxyd iene的几何构型,同时计算了红外光谱.并用规范不变原子轨道(gauge independent atom ic orb ital)G IAO/B3PW 91以及G IAO/HF方法分别在6-311G**,6-311++G**等基组进行了核磁共振谱研究,计算结果与实验结果吻合很好.     

Theoretical and experimental study of the structure and vibration spectra of 4,4′-carbonyl-di-morpholine

4,4′-Carbonyl-di-morpholine was synthesized and characterized by X-ray diffraction, the FTIR and NMR spectra. The extended MO calculations using density functional theory (DFT) and self-consistent field molecular orbital Hartree-Fock theory were carried out. The results of the calculations were compared with experimental data. The experimental and calculated results were supported each other. The performance of a hybrid B3LYP density functional was compared with the ab initio restricted Hartree-Fock method. With the basis sets of the 6-311G** quality, the DFT calculated bond lengths, dipole moments and harmonic vibrations were predicted in a very good agreement with available experimental data.     

7-氮杂吲哚衍生物分子基态和激发态性质的理论研究

用从头算HF和密度泛函B3LYP方法对7-氮杂吲哚衍生物1,3-二(N-7-氮杂吲哚基)苯、1,3,5 三(N-7-氮杂吲哚基)苯和4,4′-二(N-7-氮杂吲哚基)联苯进行全优化, 计算分子的电离势IP和电子亲和势EA等相关能量, 并用ZINDO和TDDFT方法计算吸收光谱, 用CIS优化三种化合物分子的S1激发态结构, 并分析其能量与发射光谱的关系, 计算溶剂中分子的吸收和发射光谱, 并与实验结果对照. 计算结果表明, 从7-氮杂吲哚到上述三种衍生物依次愈来愈容易接受空穴, 吸收和发射光谱红移.     

Quantum chemical studies on structure, conformation and isomerization of nitroso, nitro substituted benzene and 1,3-cyclopentadiene

The molecular structure, conformational stability and isomerization of nitroso, nitro substituted benzene and 1,3-cyclopentadiene in gas phase have been investigated using ab initio and density functional theory methods. The molecular geometries and energetics of possible conformers were obtained by employing MP2, B3LYP and B3PW91 levels of theory implementing 6-31G* basis set. The relative stabilities of the conformations were evaluated from the energy differences of the structure. Chemical hardness (η) and chemical potential (μ) were calculated at HF/6-31G* level of theory for all the positional and geometrical isomers to study the maximum hardness principle. Each optimized structure has been tested against the imaginary frequencies at MP2/6-31G* level of theory in order to be sure they are located at energy minimum.     

Theoretical study of the walk rearrangement in perfluorotetramethyl (Dewar thiophene) exo-S-oxide

A theoretical study of the ‘walk’ rearrangement in bicyclo[2.1.0]pentene and perfluorotetramethyl (Dewar thiophene) exo-S-oxide has been carried out. Despite the differences between them, the results for both reactions show an enhancement of aromaticity in the transition state, which is consistent with a pericyclic behavior. NBO calculations show that the small activation energy for the second reaction can be interpreted in terms of a strong stabilization of the transition state by the exo-oxide substituent. So, the mechanism proposed in the past should be revised.     

Theoretical investigation of the adsorption of methanol on the (110) surface of γ-alumina

The adsorption of methanol on the (110) surface of γ-alumina was investigated using both ab initio and density functional theory quantum chemical methods. A [Al₃O₉H₁₀]⁺ cluster model comprising one tetrahedral and two octahedral aluminum cations were used to describe the surface and the mechanism of adsorption of methanol. This has allowed us to rationalize the stable structures of adsorbate and the mode of bonding. The IR frequency shifts between the gas phase and the adsorbed species were also calculated and they exhibit good agreement with experiment.     

Hydrogen Bonded Complexes of Acetylacetone and Methanol: HF and DFT level Study

Summary. Several possible hydrogen-bonded complexes between the tautomeric forms of acetylacetone and methanol were studied by ab initio methods using 6-311G** and D95** basis functions at the HF and DFT (B3LYP) levels of theory. The calculations were carried out for isolated molecules and solvent assisted complexes by means of the isodensity polarized model (IPCM). The theoretical frequencies were compared with the experimental IR spectrum of an equimolar mixture of acetylacetone and methanol. It was proved that the most stable H-bonded complex acetylacetone–methanol is formed between O-bonded methanol- and the enol molecule.     

DFT Calculations of the Molecular Force Field of Vanadyl Nitrate,VO(NO3)3

A structural and vibrational theoretical study for vanadyl nitrate was carried out. The Density Functional Theory (DFT) has been used to study vibrational properties. The structures were fully optimized at the B3LYP/6‐31G*, B3LYP/6‐311G*, and B3LYP/6‐311+G* levels of theory and the harmonic vibrational frequencies were evaluated at the same level. The calculated harmonic vibrational frequencies for vanadyl nitrate are consistent with their experimental IR and Raman spectra in gas and liquid phases. Through these calculations a precise knowledge of the normal modes of vibration was obtained, considering the coordination mode adopted by the nitrate group in the mirror plane as monodentate and bidentate. A total assignment of the observed bands in the vibrational spectra for vanadyl nitrate is proposed in this work. The nature of the V–O and V ← O bonds in the compound was systematically and quantitatively investigated by means of the Natural Bond Order (NBO) analysis. The topological properties of the electronic charge density were analyzed employing Bader's Atoms in Molecules theory (AIM).     

紫杉醇的核磁共振谱及其分子几何构型的从头算研究

应用规范不变原子轨道GIAO法在HF/6 31G水平计算了MM3、PM3和HF/STO 3G三种最优分子构型下紫杉醇的δ 1H NMR和δ 13C NMR.对NMR化学位移计算值与实验值的对比和误差的统计和分析表明,采用HF/STO 3G优化的几何构型计算得到的化学位移误差最小，因此这一构型与实际分子最为接近.从理论构型得到4 OAc与3′ H的距离为0.266 3 nm，4 OAc与3′ Ph的距离为0.310 4 nm，4 OAc与2 OCOPh的距离为0.370 7nm，支持了Williams等关于紫杉醇分子内存在NOE (nuclear overhauser effect)效应及Velde等关于在极性溶剂中4 OAc与3′ Ph、2 OCOPh形成分子内疏水簇的观点.     

Ligand Site Preference in Iron Tetracarbonyl Complexes Fe(CO)4L (L = CO,CS, N2, NO+, CN–, NC–, η2‐C2H4, η2‐C2H2, CCH2, CH2, CF2, NH3, NF3, PH3, PF3, η2‐H2)

Equilibrium geometries, bond dissociation energies and relative energies of axial and equatorial iron tetracarbonyl complexes of the general type Fe(CO)₄L (L = CO, CS, N2, NO⁺, CN^–, NC^–, η²‐C₂H₄, η²‐C₂H₂, CCH₂, CH₂, CF₂, NH₃, NF₃, PH₃, PF₃, η²‐H₂) are calculated in order to investigate whether or not the ligand site preference of these ligands correlates with the ratio of their σ‐donor/π‐acceptor capabilities. Using density functional theory and effective‐core potentials with a valence basis set of DZP quality for iron and a 6‐31G(d) all‐electron basis set for the other elements gives theoretically predicted structural parameters that are in very good agreement with previous results and available experimental data. Improved estimates for the (CO)₄Fe–L bond dissociation energies (D₀) are obtained using the CCSD(T)/II//B3LYP/II combination of theoretical methods. The strongest Fe–L bonds are found for complexes involving NO⁺, CN^–, CH₂ and CCH₂ with bond dissociation energies of 105.1, 96.5, 87.4 and 83.8 kcal mol^–1, respectively. These values decrease to 78.6, 64.3 and 64.2 kcal mol^–1, respectively, for NC^–, CF₂ and CS. The Fe(CO)₄L complexes with L = CO, η²‐C₂H₄, η²‐C₂H₂, NH₃, PH₃ and PF₃ have even smaller bond dissociation energies ranging from 45.2 to 37.3 kcal mol^–1. Finally, the smallest bond dissociation energies of 23.5, 22.9 and 18.5 kcal mol^–1, respectively are found for the ligands NF₃, N₂ and η²‐H₂. A detailed examination of the (CO)₄Fe–L bond in terms of a semi‐quantitative Dewar‐Chatt‐Duncanson (DCD) model is presented on the basis of the CDA and NBO approach. The comparison of the relative energies between axial and equatorial isomers of the various Fe(CO)₄L complexes with the σ‐donor/π‐acceptor ratio of their respective ligands L thus does not generally support the classical picture of π‐accepting ligands preferring equatorial coordination sites and σ‐donors tending to coordinate in axial positions. In particular, this is shown by iron tetracarbonyl complexes with L = η²‐C₂H₂, η²‐C₂H₄, η²‐H₂. Although these ligands are predicted by the CDA to be stronger σ‐donors than π‐acceptors, the equatorial isomers of these complexes are more stable than their axial pendants.     

膦配体对金团簇[Au@Au8(PR3)8]3+(R=Me,OMe,H,F,Cl,CN)稳定化作用的理论研究

采用ab initio HF, MP2方法和密度泛函理论方法, 对具有D2h和D4d构型的膦配体稳定的过渡金属团簇[Au@Au8(PR3)8]3+(R=Me, OMe, H, F, Cl, CN)进行了几何结构、 电子结构及团簇稳定性等方面的研究. 计算表明, 与D2h构型相比, D4d构型更稳定, 两者能量相差约5~10 kJ/mol. SVWN局域泛函能够对团簇的几何结构给予较准确的描述, MP2方法对团簇的结构参数有所低估, 而离域和杂化泛函则过高地估计了团簇的结构参数. 电子结构分析表明, 中心Au原子与外围的Au原子之间通过 d 电子的成键作用构成团簇内核[Au@Au8]3+, [Au@Au8]3+与PR3配体则通过"σ给予/π反馈"模式成键. PR3配体与[Au@Au8]3+的结合能够加强内核-外围Au原子间的成键作用, 缩小外围Au原子在成键上的差异, 增大前线轨道能级间隙, 从而提高团簇的稳定性. PR3配体中R基团供、 吸电子能力的变化对[Au@Au8(PR3)8]3+结构影响较小, 但对[Au@Au8]3+-PR3结合能影响较大. 能量分析显示, 不同PR3配体与[Au@Au8]3+之间具有相近的轨道作用能, 与R基团供、 吸电子能力相关的非轨道作用能成为影响两者连接牢固程度的决定因素.     

Solid-state NMR studies and DFT calculations of flavonoids: baicalein, baicalin and wogonoside

Three flavonoids of pharmaceutical importance-baicalein, baicalin, and wogonoside-were isolated from a Chinese medicinal plant Scutellaria baicalensis Georgi and studied by 13C NMR in solution and solid state. Two-dimensional (2D) NMR spectroscopy in the liquid phase and dipolar dephasing (DD) experiments in magic-angle spinning (MAS) spectra enabled the assignment of 13C resonances. The cross-polarization (CP) time constants T(CH) and relaxation times T(H) (1rho) were obtained from the variable-contact time experiments. The principal elements of the 13C chemical shift tensor were determined in the spectra recorded under slow sample spinning (2 kHz) using phase-adjusted spinning sideband (PASS)-2D NMR technique, and were verified by density functional theory gauge-independent atomic orbital (DFT GIAO) calculations of shielding constants. Analysis of the 13C delta(ii) and comparison with shielding parameters calculated for different conformers of compounds 1-3 enabled the selection of the most reliable geometry in the solid phase. In all three compounds, an intramolecular hydrogen bond C5--OH...=C4 is formed; the existence of baicalein and baicalin with 'anticlockwise' orientation of OH groups is more probable.     

Thermochemistry of the higher chlorine oxides ClOx (x=3, 4) and Cl2Ox (x=3–7)†

Heats of formation for ClO₃, ClO₄, Cl₂O₃, Cl₂O₄, Cl₂O₅, Cl₂O₆ and Cl₂O₇ molecules are determined at the B3LYP, B3PW91, mPW1PW91 and B1LYP levels of the density functional theory employing a series of extended basis sets, and using Gaussian-3 model chemistries. Modified Gaussian-3 calculations, which employ accurate B3LYP/6-311+G(3d2f) molecular geometries and vibrational frequencies, were also performed. Heats of formation were calculated from both total atomization energies and isodesmic reaction schemes. The latter method in conjunction with Gaussian-3 models leads to the most reliable results. The best values at 298 K for ClO₃, ClO₄, Cl₂O₃ and Cl₂O₄ as derived from an average of G3//B3LYP and G3//B3LYP/6-311+G(3d2f) calculations are 43.1, 54.8, 31.7 and 37.4 kcal mol⁻¹. From calculations carried out at the G3(MP2)//B3LYP and G3(MP2)//B3LYP/6-311+G(3d2f) levels, heats of formation for Cl₂O₅, Cl₂O₆ and Cl₂O₇ are predicted to be 53.2, 52.2 and 61.5 kcal mol⁻¹. All best values are reproduced within 1 kcal mol⁻¹ by using mPW1PW91/6-311+G(3d2f) isodesmic energies. Enthalpy changes for relevant Cl–O bond fission reactions are reported. Comparisons with previous thermodynamics data are made.     

Structure,conformation and NMR studies on 1,2-dioxane and halogen substituted 1,2-dioxane molecules

Molecular structure and conformational stability of chair and twist conformers of 1,2-dioxane and halogen substituted compounds of the 1,2-dioxane have been studied using ab initio and density functional theory (DFT) methods. The molecular geometries of 1,2-dioxane, 3,6-difluoro, 3,6-dichloro, 3,3,6,6-tetrafluoro and 3,3,6,6-tetrachloro 1,2-dioxane compounds were optimized at HF, MP2, B3LYP and B3PW91 levels of theory by implementing 6-31G* basis set. To study the effect of polar medium, self-consistent reaction field theory is used to optimize the conformers at B3LYP/6-31G* level of theory. The geometrical parameters of chair and twist conformers have been discussed in the light of interaction between lone pair electrons present in the oxygen and substituted halogen atoms. The relative stability of the conformers have been studied using relative energy, maximum hardness principle and thermodynamical quantities. The 13C-NMR chemical shift study for carbon atoms in the title compounds are calculated and the results have been discussed.     

High level of ab initio and density functional theory computational study of structural and energetic properties of tetrafluorhydrazine rotamers

The HF, MP2, MP3, MP4, and QCISD ab initio methods were compared with local, hybrid, and gradient-corrected density functional theory (DFT) methods for computing structures and energies of N2F4 rotamers. In all DFT calculations 6-311 + G(2d) basis set was used. The generated structures energies of trans- and gauche-N₂F₄ rotamers, and their dissociation energies to nitrogen difluoride were compared with experimental data. Suitable hybrid and gradient-corrected DFT methods for determining structures and energies for these and similar molecular systems were discussed.     

Ab initio and density functional theory calculations of molecular structure and vibrational spectrum of ethyl azidoacetate

Here we report ab initio and density functional results for molecular properties of ethyl azidoacetate (N₃CH₂COOC₂H₅) and for the corresponding singly ionized structure (N₃CH₂COOC₂H₅⁺). Ab initio ionization energies based on Koopmans’ theorem are in excellent agreement with the experimental data from ultraviolet photoelectron spectroscopy. DFT adiabatic energy differences between neutral and ionized structures are very sensitive to electronic correlation effects and are not in very good agreement with experiment. The results for the structure and vibrational frequencies are compared with the experimental data of related molecular structures.     

杂硼原子簇XB6+ (X=C,Si, Ge,Sn, Pb)的稳定性和芳香性

利用从头算MP2方法和密度泛函理论B3LYP和B3PW91方法, 研究了杂硼原子簇XB₆⁺ (X=C, Si, Ge, Sn, Pb)的结构、稳定性及化学键合情况. 对C, Si, Ge, B使用6-311+G(d)基组, 对Sn和Pb使用LANL2DZ赝势基组. 研究结果表明, 具有C_s对称性的假平面XB₆⁺ (X=C, Si, Ge, Sn, Pb)结构是势能面上的全域极小点, 其稳定性要高于C_6v对称性的锥形结构和C₂对称性的假锥形结构. 在B3LYP水平上, 对这些异构体的势能面的极小点进行了自然键轨道(NBO)的分析; 对最稳定构型的最高占据分子轨道(HOMO)和最低空轨道(LUMO)能级差、分子轨道(MO)和核独立化学位移(NICS)进行了计算和讨论. 分析了杂原子和硼原子间、相邻硼原子间的键合情况, 讨论了最稳定构型的芳香性质.     

Ab initio and DFT studies of the molecular structures and vibrational spectra of succinonitrile

The Molecular structure, conformational stability and vibrational frequencies of succinonitrile NCCH2CH2CN have been investigated with ab initio and density functional theory (DFT) methods implementing the standard 6-311++G* basis set. The potential energy surfaces (PES) have been explored at DFT-B3LYP, HF and MP2 levels of theory. In agreements with previous experimental results, the molecule was predicted to exist in equilibrium mixture of trans and gauche conforms with the trans form being slightly lower in energy. The vibrational frequencies and the corresponding vibrational assignments of succinonitrile in both C2h and C2 symmetry were examined theoretically and the calculated Infrared and Raman spectra of the molecule were plotted. Observed frequencies for normal modes were compared with those calculated from normal mode coordinate analysis carried out on the basis of ab initio and DFT force fields using the standard 6-311++G* basis set of the theoretical optimized geometry. Theoretical IR intensities and Raman activities are reported.     

A Comparison between the Experimental and Theoretical Investigations on Carbon‐13 Isotropic Shielding Constants of Some Tripodal Tetraamine Ligands

The direct implementation of GIAO and CSGT methods for calculation of ¹³C isotropic shielding constants of fully protonated forms of six tripodal tetraamine ligands tren, pee, ppe, tpt, epb and ppb at the Hartree‐Fock level of theory are presented. The shielding constants were determined using hybrid methods (including a mixture of Hartree‐Fock exchange and DFT exchange‐correlation) and are close to the experimental data. A splayed‐like conformation was considered for fully protonated forms of all ligands, and it was confirmed that this is the most stable conformation for the latter form of such ligands. A good linear correlation between the calculated chemical shielding at gas‐phase and experimental shift values in D₂O solution was obtained.     

沸石桥羟基和硅羟基与噻吩相互作用的理论研究

采用密度泛函理论和模型簇法研究了噻吩和沸石分子筛桥羟基和硅羟基的相互作用.对噻吩吸附在硅羟基H3SiOH可能的两种配位方式及吸附在沸石模型簇H3Si(OH)Al(OH)2OSiH3桥羟基B酸上可能的两种配位方式进行了比较分析.所有模型簇采用B3LYP混合方法对氢原子在6-31G基组水平上,对硅原子、铝原子、氧原子、碳原子、硫原子在6-31 G(d)基组水平上进行了全优化和频率分析.着重考察了噻吩与硅羟基及分子筛桥羟基模型簇不同配位方式所形成的配合物的结构及能量变化.计算结果表明由于在形成沸石-噻吩和硅羟基-噻吩配合物的结构和性质变化不明显,所以它们之间的相互作用为范德华作用力.从噻吩在沸石分子筛的桥羟基和硅羟基与噻吩的相互作用的吸附热可以推断,噻吩优先吸附在桥羟基上,只有桥羟基吸附饱和后方吸附在硅羟基上.由频率分析结果和实验结果的一致性可以证明所推测吸附模型的正确性.