Ab initio program for treatment of related molecules. I. Integral part

Anab initio integral program is described. It utilizes the local symmetries to avoid the redundant computation of integrals over spatially equivalent subsets of the basis. The integrals are grouped in a particular way to facilitate their transfer. The program is very suitable for the treatment of related systems with model geometries. The computing times of different programs are compared and the efficiency of the presented one is demonstrated.     

POLAG-a general computer program to calculate stability constants from polarographic data

A general computer program, POLAG, that will calculate stability constants from polarographic data, has been written. The program requires no pretreatment of the experimental data. Any equilibrium model, consisting of species having the general formula M(m)H(j)(OH)(k)L(n)L'(p) may be fitted to the data. The performance and versatility of POLAG has been demonstrated by reprocessing polarographic data previously published by four different research groups.     

Covalence reduction factors of four-coordinated pseudo-tetrahedral paramagnetic compounds inD 2d symmetry

Theoretical expressions for the covalence reduction factors of orbital angular momentum and spin-orbit coupling in pseudo-tetrahedral four-coordinated paramagnetic complexes withD _2d symmetry, denoted ask's andR's respectively, have been derived. p ]The mixing coefficients in the antibonding MO's for the CuCl ₄ ^2- ion in three complexes are estimated using suitable approximations. It is shown thatk's must be less thanR's in Tinkham's approximation. Certain misconceptions existing in the literature regarding the value of the integral 〈p _u |???u|s〉 have been clarified.     

Conformational study on the structures and energies of the weakly bound complexes of AlCl3 with diatomic molecules

In this work we present the results of high level ab initio calculations on weakly bound complexes of aluminium trichloride and hydrogen halides, HX, halogens, X₂ and diatomic interhalogens, XY (where X, Y = F, Cl, Br). Based upon these calculations we have predicted that all structures in the staggered conformation (except for Cl₃AlFH and Cl₃AlClH) are stable minima while those in the eclipsed configurations are transition state structures. In the XH complexes the strength of interaction with the Cl₃Al group is FH > ClH > BrH. In the case of X₂ species it is Br₂ > F₂ > Cl₂, and finally in the XY (YX) group it is: FBr > ClBr > FCl > BrCl > BrF > ClF. An erratum to this article is available at .     

A group theoretical study of f n systems in an environment of approximately icosahedral symmetry

Group theoretical methods are developed to determine in a generalised format for an f ⁿ ion in a crystal field environment of icosahedral symmetry, the effect on the energy level scheme when a crystal field distortion is considered parallel to any direction. As an illustration, the effect on the g-tensor components are examined as a function of the magnitude and the direction of the crystal field distortion. All appropriate reduced matrix elements in group theoretical terminology are evaluated for the f ⁿ -ion ground states. Specific results are given for the f ³-ion case and compared with electron paramagnetic resonance, optical, and magnetic susceptibility data.     

Development of parallel density functional program using distributed matrix to calculate all-electron canonical wavefunction of large molecules

We developed a new parallel density-functional canonical molecular-orbital program for large molecules based on the resolution of the identity method. In this study, all huge matrices were decomposed and saved to the distributed local memory. The routines of the analytical molecular integrals and numerical integrals of the exchange-correlation terms were parallelized using the single program multiple data method. A conventional linear algebra matrix library, ScaLAPACK, was used for matrix operations, such as diagonalization, multiplication, and inversion. Anderson's mixing method was adopted to accelerate the self-consistent field (SCF) convergence. Using this program, we calculated the canonical wavefunctions of a 306-residue protein, insulin hexamer (26,790 orbitals), and a 133-residue protein, interleukin (11,909 orbitals) by the direct-SCF method. In regard to insulin hexamer, the total parallelization efficiency of the first SCF iteration was estimated to be 82% using 64 Itanium 2 processors connected at 3.2 GB/s (SGI Altix3700), and the calculation successfully converged at the 17-th SCF iteration. By adopting the update method, the computational time of the first and the final SCF loops was 229 min and 156 min, respectively. The whole computational time including the calculation before the SCF loop was 2 days and 17 h. This study put the calculations of the canonical wavefunction of 30,000 orbitals to practical use.     

The vibrational spectra of linear and branched perchlorosilanes Si n Cl2n+2 and their simulation using a local symmetry force field

Infrared andRaman vibrational spectra ofn-Si₄Cl₁₀,n-Si₅Cl₁₂,neo-Si₅Cl₁₂ and [(SiCl₃)₃Si]₂ have been measured and assigned. A local symmetry force field has been developed to simulate vibrational spectra of all (noncyclic) perchlorosilanes Si _n Cl_2n+2 known today (n=2, 3, 4, 5, 8). The observed spectra are reproduced satisfactorily

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Die Vibrationsspektren linearer und verzweigter PerchlorsilaneSi _n Cl _2n+2 und deren Simulierung mittels eines lokalen Symmetrie-Kraftfeldes

Zusammenfassung Infrarot- undRaman-Spektren vonn-Si₄Cl₁₀,n-Si₅Cl₁₂,neo-Si₅Cl₁₂ und [(SiCl₃)₃Si]₂ wurden aufgenommen und zugeordnet. Ein lokales Symmetrie-Kraftfeld zur Simulation der Spektren aller bisher bekannten (nicht cyclischen) Perchlorsilane Si _n Cl_2n+2 (n=2, 3, 4, 5, 8) wird angegeben. Die beobachteten Spektren werden zufriedenstellend reproduziert

     

New synthesis of coloured dihydrofurylium salts

A new synthesis has been described for coloured dihydrofurylium salts of the hemicyanine type based on the reaction of 2,2,5-trisubstituted 3-benzoyl-methylidene-2,3-dihydrofurans with organomagnesium or organolithium compounds, tertiary aromatic amines or 1,1-diarylethylenes.

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Eine neue Synthese von DihydrofuryliumfarbsalzenVorläufige Mitteilung

Zusammenfassung Es wurde eine neue Synthese für Dihydrofuryliumfarbsalze beschrieben. Die Synthese gründet sich auf die Reaktion von 2,2,5-trisubstituierten 3-Benzoylmethyliden-2,3-dihydrofuranen mit den Magnesium- bzw. Lithiumorganischen Verbindungen, tertiären aromatischen Aminen oder unsymmetrischen Diarylethylenen.

     

New thallium(III) chloride complexes with pyridine carboxylic acids: from molecular compounds to supramolecular associations

Reactions of TlCl₃ with picolinic acid (Hpic), nicotinic acid (Hnic), isonicotinic acid (Hinic) and 3-hydroxy-picolinic acid (H3hpic) afford the isolation of new chlorothallium(III) complexes. The compounds are characterized by IR, Raman and multinuclear NMR (¹H,¹³C,²⁰⁵Tl). The molecular structures of [TlCl₂(pic)(Hpic)]·0.5H₂O (1), [TlCl₂(nic)(Hnic)] (2), [TlCl(inic)₂]·0.6C₂H₅OH (3) and [TlCl(3hpic)₂(h3hpic)] (4) are determined by single-crystal X-ray diffraction. A distorted octahedral TlCl₂N₂O₂ core containing the O,N-chelating ligands is achieved in the monomeric complex 1. The coordination polyhedron in compounds 2–4 is pentagonal bipyramidal, i.e. TlCl₂NO₄ in 2, and TlClN₂O₄ in 3 and 4, respectively. O,O′,N-Bridging ligands result in a polymer chain for 2 and a three-dimensional polymeric association in 3, while compound 4 is monomeric (O, N-and O,O-chelating ligands).     

New forms of the INAA advance prediction computer program

The development and experimental testing of a new instrumental neutron activation analysis (INAA) Advance Prediction Computer Program (APCP) is described for activation by high-intensity, short-duration reactor pulses. Also presented are the results of extensive experimental testing of the APCP for epithermal INAA. Brief mention is made of other forms of the APCP not yet completed, but in various stages of development.     

Ab initio SCRF study of solvent effect on the nonlinear polarizabilities of different intramolecular charge-transfer molecules

The macroscopic solvent effect on static nonlinear polarizabilities of a number of intramolecular charge-transfer (ICT) molecules have been studied by using the self-consistent-reaction field (SCRF) model in the framework of ab initio time-dependent-HF (TDHF) method using 3-21G basis set. The two-state model of static β and <γ> have been used to obtain their functional dependence on the ground-state hardness parameter, dipole moment and solvation energy. The methyl substituted 4-quinopyran and other zwitterionic molecules are found to exhibit strong diminution of both quadratic and cubic polarizabilities at higher solvent reaction field due to negative solvatochromic effect. However, molecules showing positive solvatochromism lead to strong enhancement of the NLO response on increase in solvent polarity. The evolution pattern of the solvent modulated static β and <γ> of 4-quinopyran (4QP) obtained for varying inter-ring torsion angle differ strikingly from that shown by p-amino p'-nitro biphenyl (ANB).     

麝香草的新单萜配糖物的分离与合成

从麝香草(Thymus vulgaris L)的甲醇萃取物中分离出三个单萜配糖物. 用核磁共振光谱确定了它们的结构为对伞花-9-基-β-D-葡糖苷(1), 5-β-D-葡糖苷百里氢醌(2)和2-β-D-葡糖苷百里氢醌(3). 其中1是新化合物, 用以对伞花-9-醇为原料的对映体选择性合成方法确定了化合物1的8位的立体化学为R型.     

New transformation of cycloalkanone acetals by peracids α,ω-dicarboxylic acids synthesis

A new process of oxidation of cycloalkanone acetals under the action of in situ generated performic acid has been found. The main products of the reaction are α, ω-dicarboxylic acids obtained with the yield up to 77% depending on the size of acetals ring. The process has been explored and optimized on the example of the dodecanedioic acid synthesis (a valuable industrial product).     

New lipids from the soft corals of the Andaman Islands

Sphingolipids and glycolipids including previously unknown (2S,3S,4R)-1,3,4-trihydroxy-2-(2-(R)-hydroxyoctadecanoylamino)octadec-8E-ene, (2S,3R)-1,3-dihydroxy-2-octadecanoylamino-4E,8E-hexadecadiene, and (2-hydroxy-3-hexadecyloxypropyl)--L-fucopyranoside were isolated from soft corals collected on the shelf near the Andaman Islands (Indian Ocean). The structures of all compounds were established by spectroscopic methods and chemical analyses. The lipids possessed antibacterial activity against Bacillus subtilis, Bacillus pumilus, Escherichia coli, and Pseudomonas aeruginosa and antifungal activity against Aspergillus niger, Rhizopus oryzae, and Candida albicans.     

New synthesis of serricornin,the sex pheromone of the cigarette beetle (Lasioderma serricorne)

A new approach to the total synthesis of serricornin, the sex pheromone of the cigarette beetle, based on readily available (4S,5E)-4-methyhept-5-enenitrile was implemented.     

Dithiobiuretes in reactions with electrophilic acetylenes. New derivatives of 1,3,5-dithiazines,-thiadiazines and-triazines as the products of competing reactions of nucleophilic cycloaddition

The nucleophilic addition of 2,4-dithiobiurete, 1- and 1,4-substituted 2,4-dithiobiuretes (2 a-e) with benzoylacetylene (1) has been studied. 2-(Benzoylmethyl)-4-(R¹-imino)-6-(R²-imino)dihydro-4H-1,3,5-dithiazinium perchlorates (3 a-e) are obtained in glacial acetic acid (AcOH) in the presence of equimolar quantities of HClO₄. The reaction of benzoylacetylene with 1,5-diphenyl-2,4-dithiobiurete in either of MeOH, C₆H₆, or MeCN solvents proceeds non-selectively to give a mixture of products such as 2-(benzoylmethyl)-4,6-di(phenylimino)dihydro-4H-1,3,5-dithiazine (5), 2-(benzoylmethyl)-4-(β-benzoylvinyl)thio-3-phenyl-6-(phenylimino)-3,6-dihydro-2H-1,3,5-thiadiazine (8), 2-(benzoylmethyl)-1,3-diphenylhexahydro-1,3,5-triazine-4,6-dithione (7) and N-(β-benzoylvinyl)-N-phenylthioureas (6).     

New method for the annelation of the pyridine fragment to azines

The reaction of quinoxaline-2-carbaldehyde with ethyl (E)-3-aminocrotonate afforded ethyl 4-oxo-1,4-dihydropyrido[2,3-b]quinoxaline-3-carboxylate, which is a structural analog of nalidixic and 4-quinolone-3-carboxylic acids representing the basis of the known antibacterial drugs of the fluoroquinolone series.     

Pyrazoles as molecular probes to study the properties of co-crystals by solid state NMR spectroscopy

Equimolar mixtures of 3,5-dimethylpyrazole (1) with four NH-imidazoles (2–5) have been studied by¹³C and ¹⁵N CPMAS NMR and by DSC. In three cases, the solid mixture behaves as the sum of the individual components [imidazole (2), 2-methylimidazole (3) and 2,4(5)-dimethylimidazole (5)]. In one case [4,5-dimethylimidazole (4)], the mixture corresponds to a new species in which the dynamic behavior of1 no longer exists.     

The application of the CSB to the prediction of single step reactions and reaction pathways

Applications of the CSB (Common-Sense Builder) system for the logic-oriented and knowledge-assisted simulation of chemical reaction courses are described. We present the possibility of using the CSB for two ways of reaction simulation, i.e., as a multi-step process or as single step procedure. Results of the first simulation type are given to predict the course, and to model reaction mechanism. The second one is capable of complex chemical transformations such as multi-component and cascade reactions to generate structurally diverse products for combinatorial chemistry. In several experiments performed, we analyze the capabilities and limitations of the CSB modules and controlling tools for the examination and selective generation of solutions.