The conformation of succinic acid in aqueous solution studied by 1h and 13c nmr

The vicinal H-H coupling constants of succinic acid were obtained as a function of pH and related to its conformation. The syn-clinal arrangement of the two CO₂H groups appears as more stable than the anti-periplanar conformation at variance with previous work but in agreement with recent data on similar molecules. The vicinal¹³CO₂H-¹H coupling constant was also obtained and is found to support that conclusion. The analysis was extended to solvents of variable dielectric constant and no significant effect was found.     

A microwave and quantum chemical study of allyltrifluorosilane

The structural and conformational properties of allytrifluorsilane, H₂CCH-CH₂-SiF₃, have been explored by microwave (MW) spectroscopy and high-level ab initio and density functional theory quantum chemical calculations. The microwave spectrum was investigated in the 18-62 GHz spectral regions. The a-type R-branch transitions of one conformer were assigned for the ground as well as for 10 vibrationally excited states. The CC-C-Si chain of atoms in this rotamer takes an anti-clinal (‘skew’) conformation, with a dihedral angle calculated to be 111.6° from the syn-periplanar (0°) conformation. The question whether a CC-C-Si syn-periplanar conformer exists as a high-energy form in the gas phase remains open. In most of the quantum chemical calculations this conformation is predicted to be a transition state. However, in the most advanced calculations (B3LYP/aug-cc-pVTZ level of theory) the syn-periplanar conformer is predicted to be a stable rotamer that is calculated to be 6.5 kJ/mol higher in energy than the anti-clinal form. Since there is no indication in the MW spectrum for the presence of high-energy form(s), it is concluded that the anti-clinal conformer is at least 4 kJ/mol more stable than any other hypothetical rotamer.     

Conformational analysis—XIII: Syn and anti [3.2]-, [3.3]-, [4.2]-, and [4.3]-metacyclophanes

While in [3.3]metacyclophane (19) the aromatic rings preferentially adopt the syn arrangement, its lower and higher homologues, i.e. [2,2]-, [3.2]-, [4.2], and [4.3]-metacyclophane (1, 6, 26 and 30), adopt the anti conformation. Substituted [m,n]metacyclophanes do not necessarily behave similarly to the parent hydrocarbons. Substituted compounds exhibiting a different conformation are [3.2]metacyclophane-1,11-dione (7) (syn), [3.3]metacyclophane-2,11-dione (24) and the corresponding bis[propylene thioacetal] (25) (anti), [4.2]metacyclophane-2,12-dione (27) (syn), and [4.3]metacyclophane-2,13-dione (31) (syn). Thus, the solution conformation of an [m.n]metacyclophane is sensitive both to chain length [m.n.] of the bridges and substitution. The ring inversion barriers determined by variable temperature ¹H NMR decrease with increasing length of the bridges and qualitatively correlate with the transanular strain present in the pertinent system.     

Conformational study of α-arylethylamides of (−)-camphanic acid

The absolute conformation and configuration of diastereomeric amides (4A,B–6A,B) of (1S,3R)-camphanic acid (lactone of 1-hydroxy-2,2,3-trimethylcyclopentan-1,3-dicarboxylic acid, (−)-camphanic acid 9) with α-arylethylamines 1–3 are deduced from ¹H NMR data and MM2 calculations. The α-arylethyl group in diastereomers A and B adopt nearly opposite absolute conformations, stabilized by hydrogen bonding in the syn-oriented O–C(1)–C(6)–N–H unit, and repulsive interaction between the 1′C–Me group and the amide CO group. The absolute configuration (1′S) is assigned to the 4A–6A diastereomers, and the (1′R)-configuration to the 4B–6B diastereomers; this assignment is confirmed by the preparation of 4A and 5A from enantiomerically pure (1′S)-α-arylethylamines 1 and 2, respectively. These results also enabled the assignment of pro-R (H_R) and pro-S (H_S) protons in the benzyl derivative 7.     

Structures of the tricyclododecenes prepared by the catalytical intramolecular cyclisation of 1,5,9-cyclododecatriene

The internal cyclisation of 1,5,9-cyclododecatriene, induced by a catalytical amount of Cp₂TiCl₂-LAHδ, leads to a mixture of cis, anti, cis-tricyclo[7.3.0.0^2,6]-7-dodecene (1), cis,syn,trans-tricyclo[7.3.0.0^2,6]-7-dodecene (2), trans,syn-tricyelop[7.3.0.0^2,6]-6-dodecene (3) and 5,6,7,8,9,10-hexahydrobenzocyclooctene (4). The structures of the main products were determined from the spectra of a number of derivatives taking into account symmetry properties and configurational flexibility.     

DBU induced formation of 8-bromoguanosine dimer with three hydrogen bonds between the GG− base pairs

Upon hemideprotonation of 8-bromoguanosine (8-BrG) at the N1 position, induced by DBU, the adduct [8-BrG][8-BrG]^?[DBU–H]⁺ was formed. Slow evaporation of the 8-BrG methanol solution, in the presence of 0.5 equiv of DBU, yielded two polymorphic structures (1 and 2), where a neutral [8-BrG] (A) and N1 deprotonated, anionic 8-bromoguanosine [8-BrG]^? (B) were joined together through three intermolecular hydrogen bonds involving O6, N1 and C2–NH₂ sites. Such pairing gave planar GG^? dimers as the basic motif of crystal packing in both polymorphs. Both neutral and deprotonated guanosine molecules in the structure of 1 had the ribose units in a syn conformation. In the structure of polymorph 2, the N1 deprotonated guanosine molecule (B) retained the syn glycosidic conformation, while the non-deprotonated guanosine molecule (A) adopted the natural anti conformation of the ribose unit with respect to the nucleobase. Ribose rings revealed different puckering; only those of deprotonated molecules 1B and 2B possessed the usual C2′-endo envelope conformation. Crystal packing in both structures was guided by the highly complex H-bonded pattern. The CSD was searched for related structures, which are discussed with reference to polymorphs 1 and 2. ¹H and ¹³C NMR spectroscopic evidence is provided showing that the three H-bonded adduct [8-BrG][8-BrG]^?[DBU–H]⁺ was also formed in the highly H-bond competitive DMSO solution.     

Synthesis,spectral and computational studies of some N-acyl-t(3)-isopropyl-r(2),c(6)-bis-2′-furylpiperidin-4-one oximes

Four N-acyl-t(3)-isopropyl-r(2),c(6)-bis-2′-furylpiperidin-4-one oximes 1–4 were synthesized and the high resolution ¹H and ¹³C NMR spectra have been recorded at various temperatures and analyzed. The spectra reveal the presence of two rotameric forms (syn and anti) in solution. ¹H-¹H COSY and ¹H-¹³C COSY spectra have been recorded to assist the assignment of the signals for the syn and anti isomers of 1–4. Coupling constants predict an equilibrium mixture of boat form B₁ and alternate chair form CA for 1–4. The effect of varying the substituents at nitrogen and at C(4) on the ¹H and ¹³C chemical shifts has been analyzed in detail. The molecular structures of the N-acyl derivatives 1–4 were also determined using AM1 Hamiltonian and the results have been compared to the results derived from spectral studies. Mass spectra have also been recorded for 1–4.     

Crystal structure and spectral characterization of hexanuclear oxo titanium(IV) clusters: [Ti6O6(OSi(CH3)3)6(OOCR)6] (R = Bu,CH2Bu,C(CH3)2Et)

Hexanuclear oxo titanium(IV) siloxo carboxylate complexes with the general formula [Ti₆O₆(OSi(CH₃)₃)₆(OOCR)₆] (R = Bu^t (1), CH₂Bu^t (2), C(CH₃)₂Et (3)) were synthesized in quantitative yield, by the reaction of Ti(OSiMe₃)₄ with the appropriate organic acid. Crystal structure determination revealed that molecules of 1–3 are composed of [Ti₆-(μ₃-O)₆] cores stabilized by six syn–syn carboxylato bridges and six terminal siloxide ligands. Each metal atom is surrounded by six oxo atoms, capping the triangular faces of the distorted octahedron. Spectral characterization (IR, NMR) of 1–3 revealed a significant non-equivalence of the carboxylate group interactions, resulting from the asymmetry of the Ti-μ-OOC bonds of the syn–syn bridges. The thermal stability of the studied compounds was determined from TGA/DTA analysis.     

9,21,22-Triaza-2,11-dithia[3.3](2,6)pyridino(2,9)phenanthrolinophane: a five-donor macrocycle functioning as a bidentate ligand

9,21,22-Triaza-2,11-dithia[3.3](2,6)pyridino(2,9)phenanthrolinophane 4 was prepared from a cyclization reaction of 2,6-bis(mercaptomethyl)pyridine 5 and 2,9-bis(bromomethyl)phenanthroline 6. Results from ¹H NMR analysis are inconclusive but those derived from semi-empirical molecular orbital PM3 calculations support a preference for a syn conformation for 4. The conformation barrier for interconversion between two syn isomers of 4 was estimated to be 36.5 kJ mol⁻¹ on the basis of a dynamic ¹H NMR study. The manganese(II) and zinc(II) complexes of 4 were prepared and the metal to ligand ratios were found to be 1:1 and 2:1, respectively, by elemental analyses. Results from an ¹H NMR analysis of the zinc(II) complex of 4 suggest that only the two nitrogen atoms of the phenanthroline moiety participate in the co-ordination.     

Syntheses and structure of 2,11-dithia[3.3](2,6)pyrazinophane and its coordination complexes of Cu(I) and Co(II)

The cyclophane ligand, 2,11-dithia[3.3](2,6)pyrazinophane (L), was synthesized by a simpler method and characterized by ¹H NMR, which was used to synthesize coordination complexes by reactions with Cu⁺ (I) and Co²⁺ (II) cations. Single-crystal X-ray analysis revealed that the conformation of the ligand L is syn(boat-chair), while in I and II it adopts syn(boat-chair) and syn(chair-chair), respectively. In the former coordination compound, Cu(I) is coordinated with two nitrogen and one sulfur atom of the ligand. In the latter one, Co(II) is coordinated with two nitrogen and two sulfur atoms of the ligand. In complexes I and II, the formation of three-dimensional structure depends on π-π-stacking and hydrogen bonds.     

Synthesis,characterization and reactivity of pentacarbonyl(η1-2,4-pentadienyl)manganese

Reaction of NaMn(CO)₅ with trans-1-bromopenta-2,4-diene in tetrahydrofuran at −78°C gives (η¹-2,4-pentadienyl)Mn(CO)₅ (1) in excellent yield. Compound 1 undergoes η¹ → syn-η³ → η⁵ transformation and, yields (syn-η³-2,4-pentadienyl)Mn)(CO)₄ (2) and (η⁵-pentadienyl)Mn(CO)₃ (3), respectively. The reactions of 1 with the electrophiles tetracyanoethylene (TCNE) and sulfur dioxide (SO₂) were investigated. Compound 1 undergoes a [4 + 2] cycloaddition with TCNE and an insertion reaction with SO₂. The product are characterized by elemental analysis and spectroscopic data.     

Chiral ethylene-bridged flavinium salts: the stereoselectivity of flavin-10a-hydroperoxide formation and the effect of substitution on the photochemical properties

A series of chiral non-racemic N¹,N¹⁰-ethylene bridged flavinium salts 4 was prepared using enantiomerically pure 2-substituted 2-aminoethanols (R?=?isopropyl, phenyl, benzyl, 4-methoxybenzyl, 4-benzyloxybenzyl) derived from amino acids as the sole source of chirality. The flavinium salts were shown to form 10a-hydroperoxy- and 10a-methoxy-adducts with moderate to high diastereoselectivity depending on the ethylene bridge substituent originating from the starting amino acid. High diastereoselectivities (dr values from 80:20 to >95:5) were observed for flavinium salts bearing benzyl substituents attached to the ethylene bridge. The benzyl group preferred the face-to-face (syn) orientation relative to the flavinium unit; thereby effectively preventing nucleophilic attack from one side. This conformation was found to be the most stable according to the DFT calculations. Consequently, the presence of benzyl groups causes intermolecular fluorescence quenching resulting in a significant decrease in the fluorescence quantum yield from 11% for 4a bearing an isopropyl substituent to 0.3% for 4c containing a benzyl group and to a value lower than 0.1% for the benzyloxybenzyl derivative 4e.     

Stereoselectivity control in Diels–Alder reactions of 4-thiosubstituted 5-alkoxyfuranones: synthesis and reactivity of enantiopure 4-sulfinyl and sulfonyl 5-(l-menthyloxy)furan-2(5H)-ones

The synthesis of enantiomerically pure (S)-4-phenylsulfinyl- and 4-phenylsulfonyl-(5S)-5-(l-menthyloxy)furan-2(5H)-ones 5a and 6 and (5R)-5-(l-menthyloxy)-4-phenylsulfonylfuran-2(5H)-one 8 and the study of their reactions with cyclopentadiene are described. The sulfur substituents at C-4 modify (sulfone 8, anti/syn=78/22) and invert (sulfoxide 5a and sulfone 6, anti/syn≈27/73) the trend imposed by C-5 on the π-facial selectivity and the syn-adducts become the favoured ones. The endo or exo approach mode is favoured for anti (endo/exo ratio ranging between 26 and 5) or syn (exo/endo ratio ranging between 4.5 and 2.3) attack, respectively.     

Spectroscopic and theoretical studies of N-trichlorophosphazotrifluoroacetyl,CF3C(O)NPCl3 and N-trichlorophosphazotrichloroacetyl,CCl3C(O)NPCl3

FTIR, Raman and NMR spectra of N-trichlorophosphazotrifluoroacetyl, CF₃C(O)NPCl₃ (1) and N-trichlorophosphazotrichloroacetyl, CCl₃C(O)NPCl₃ (2) were obtained. The experimental data are compared with results of ab initio and density functional theory (DFT) calculations. According the theoretical studies the main conformer for both molecules possesses C_s symmetry (CO bond syn respect to the NP bond). The preference of the syn conformation has been rationalized based on the natural bond orbital formalism. The vibrational spectra of 1 in the liquid phase and 2 in the solid phase are in good agreement with theoretical results.     

The effect of the C-methyl substitution on the molecular geometry of the silatrane skeleton: The crystal structures of 1-(4′-tolyl)-silatrane and 1-(4′-tolyl)-3,7,10-trimethylsilatrane

Unsubstituted (1) and 3,7,10-trimethyl substituted (2) 1-(4′-tolyl)-silatranes were synthesized. ¹H, ¹³C, ¹⁵N and ²⁹Si NMR spectra were recorded and assigned. The conformation of the 2 stereoisomers in solution were characterized by the NMR spectra. 1 is monoclinic, P2₁/c, with a = 13.454(2), b = 13.888(2), c = 14.345(2) Å, β = 99.10(2)°. The major stereoisomer fraction of 2 is orthorhombic, Pbca, with a = 12.168(2), b = 13.754(4), c = 20.260(3) Å. The structures were solved by direct methods and were refined by least squares to R values of 0.039 and 0.066 for 3523 and 2158 reflexions. The N→Si distances are 1: 2.169(2) (mean) and 2: 2.236(3) Å. The solid state conformation of the 2 major stereoisomer fraction is different from that in solution and this is the first example of a silatrane crystal structure where the silatrane moiety lacks C₃ symmetry.     

Synthesis and structural properties of thiapyridinophane and its complex with Ni(II) and Ag(I)

The 2,11-dithia[3.3](3,5)pyrdinophane (L¹) has been synthesized by a new method and characterized by ¹H NMR, which is used to form coordination complexes C₁₄H₁₄N₄O₆S₂Ni (I) by addition of Ni²⁺ cation and C₁₄H₁₄N₃O₃S₂Ag (II) by addition of Ag⁺ cation. 2,11,20-Trithia[3.3.3](3,5)pyridinophane (L²) and 2,11,20,29-tetrathia[3.3.3.3](3,5)pyridinophane (L³) have also been synthesized as by-products. Single-crystal X-ray analysis reveals that the conformation of the L¹ is syn(boat-chair), complexes I and II also adopt syn(boat-chair) (CIF files CCDC nos. 1400332 (I) and 700724 (II)). While in I, Ni(II) is coordinated with L¹ with two nitrogen and four oxygen atoms, in II, Ag(^I) is coordinated with L¹ by two nitrogen and two sulfur atoms came from four ligands. In complexes I and II, the formation of three-dimensional structure depends on π???π stacking and hydrogen bonds.     

Stereocontrolled synthesis of enantiomerically pure unsaturated analogues of 2,6-DAP. Part 5

An efficient new stereocontrolled synthesis of (2R,6R)-(+)- and (2S,6S)-(−)-2,6-diamino-4-methylene-1,7-heptanedioic acid 8a and 9a, respectively, has been accomplished starting from the glycine-derived chiral synthon 1. The enantiomerically pure α-alkyl derivatives 8b–d and 9b–d have also been synthesized. The absolute configuration of the new stereocenters was assigned on the basis of ¹H NMR spectra.     

Two diasteoisomers of 5-hydroxy-6-methylpipecolic acid from seeds of Fagus silvatica L.

Two diastereoisomers of 5-hydroxy-6-methylpipecolic acid have been isolated from beechnuts. The configurations of the two amino acids have been assigned as (2S, 5S, 6S) (1) and (2S, 5R, 6S) (2). The determination of structure and configuration for the two new amino acids is mainly based on spectroscopic and rotatory evidence. The ¹³C-NMR and ¹H-NMR spectra of the three ionic forms of the two amino acids and of S-pipecolic acid and (2S, 5R)-5-hydroxypipecolic acid and the CD-curves of the cations and amfoions of 1, 2, and (2S, 5R)-5-hydroxypipecolic acid have been recorded.     

Two multi-dimensional frameworks constructed from zinc coordination polymers with pyridine carboxylic acids

Two novel zinc coordination polymers [Zn₂(H₂O)L(MoO₄)]_n (1) and [Zn₄(PO₄)₂L′(H₂O)]_n (2) (H₂L=2,2′-bipyridine-6.6′-dicarboxylic acid, H₂L′=2,2′-bipyridine-4,4′-dicarboxylic acid) have been hydrothermally synthesized and characterized by elemental analyses, IR spectra, UV spectra, single-crystal X-ray diffraction and thermogravimetric analyses. Structural analyses indicate that 1 represents a 2-D sheet structure built by dimeric [Zn₂L(H₂O)]²⁺ units and MoO₄^2– groups whereas 2 displays an interesting 3-D framework constructed by tetranuclear zinc clusters, L′^2? ligands and PO₄^3– groups. Examination of UV spectra suggests that both 1 and 2 can stably exist in the pH range of 2.45–5.45 and 3.01–8.55 in aqueous solution, respectively. The room-temperature solid-state photoluminescence of 1 and 2 are derived from the intra-ligands π–π? transitions of H₂L and H₂L′ ligands and the ligand-to-metal-charge-transfer transitions.     

Synthesis, 1H-NMR conformational analysis and complexation studies of two di-imidazolyl acetamido p-tert-butylcalix[4]arenes

The synthesis of a new di-imidazolyl-di-methoxy acetamido p-tert-butylcalix[4]arene 4 is reported. 4 has been prepared by reacting the corresponding di-methyl ester di-methoxy derivative with histamine in 1:1 mixture of methanol: toluene. The binding properties of 4 towards alkali, alkaline earth, transition (Zn²⁺, Co²⁺) and heavy (Pb²⁺, Cd²⁺) metals have been investigated along with the complexes stoichiometries. The ¹H-NMR spectra of complexes show the location of cations in receptor 4. Partial cone conformation is observed only with strontium and calcium whereas the cone conformation is detected with most of the cations. Comparison of the complexation results with those obtained for di-imidazolyl acetamido p-tert-butylcalix[4]arene 3 missing the methyl groups is also reported.