Cyclooligomerization of a helix-bearing template into macrocycles bearing multiple helices

Cyclooligomerization was investigated for separating and spatially arranging helical peptides as discontinuous surfaces. Tetrapeptide H-[Ile-Ser-Lys(Ox)]-OH, containing a turn-inducing oxazole constraint, was connected through its lysine side chain via a beta-alanine linker to the C-terminus of a two-turn helical nonapeptide Ac-(cyclo-4,8)-LRL [KARAD](Aib). The resulting helix-appended template was self-condensed and cyclized to a library of macrocycles ( n = 2-6) containing multiple (2-6) helices. An NMR structure shows retention of alpha helicity in the cyclotrimer ( n = 3).     

The syntheses and conformational studies of [n](2,4)heterophanes and [7](3,5)pyrazolophane

Synthetic sequences from (n + 3)-membered 2-cycloalkenones provide furan, thiophene and pyrrole derivatives bridged at the 2,4-positions by n-methylene chains (n = 6, 7, and 9) as well as a pyrazole derivative bridged at the 3,5-positions (n = 7). The molecular geometry as a function of the chain length has been investigated spectrometrically. The aliphatic chain of [7](2,4)pyrrolophane and [7](3,5)pyrazolophane is found to reside in the one side of the respective heteroaromatic rings even at 205°, whereas that of [7](2,4)thiophenophane flips up and down the thiophene ring upon heating, the energy barrier ΔG_c^≠ being 18·2 kcal/mol (T_c 111°C at 60 MHz). The conformational behaviour of the heptamethylene chain is thus dependent on the angle between the bonds connecting each heteroaromatic carbon with the benzylic one. Though the hexamethylene chain of the [6](2,4)heterophanes is fixed to the one side of the aromatic ring, the nonamethylene chain of the [9]-homologues is rapidly moving between the both sides even at room temperature. The red-shifts of the B-bands are attributed to the distorted, nonplanar heteroaromatic rings. The mass spectra of these heterophanes indicate the initial C(1)-C(2) fission of the polymethylene chain probably due to the steric strain of the systems.     

Solvent-assisted spontaneous resolution of a 16-membered ring containing gold(I) showing short Au...Au aurophilic interaction and a figure-eight conformation

The achiral 4,6-bis(diphenylphosphino) phenoxazine (nixantphos) ligand was used to synthesize a gold(I) complex, [Au2(nixantphos)2](NO3)2, containing a 16-membered [Au2(nixantphos)2](+2) cationic ring in a chiral figure-eight conformation. The single crystal X-ray diffraction analysis of [Au2(nixantphos)2](NO3)2.3MeOH.H2O (1) and [Au2(nixantphos)2](NO3)2.4MeCN (2) revealed a solvent-assisted spontaneous resolution of the [Au2(nixantphos)2](NO3)2 complex. By changing the nature of the solvent, homochiral hydrogen bonded helices (1) and heterochiral hydrogen bonded monomers (2) were obtained. Multinuclear NMR spectroscopy showed the evidence of chemical exchange phenomenon related to the interconversion of the enantiomeric skeletons of the 16-membered macrocycle in solution. The existence of the Au...Au aurophilic interaction was confirmed by the analysis of the spin-system in the (31)P NMR spectrum.     

Stabilization of magnetic ordering observed for the bridging NCN group

The reaction of meso-tetraphenylporphyrinatomanganese(II) (MnTPP) and N,7,7-tricyanoquinomethanimine (TCQMI) forms {[Mn(III)TPP](+)}(2)[TCQMI](2)(2-), which possesses a one-dimensional chain with μ(1,3)-NCN linkages. The reduced [TCQMI](?-) dimerizes as [TCQMI](2)(2-) with a long, central 1.611(8) ? C-C bond and leads to a honeycomb, two-dimensionally layered structure with 24-membered rings. The μ(1,3)-NCN linkage stabilizes a canted antiferromagnetic (weak ferromagnetic) behavior with T(c) of 3.7 K.     

Efficient synthesis and astonishing supramolecular architectures of several symmetric macrolactams

The synthesis of four C(n) symmetric macrocyclic lactams cyclo-[NH-CH(2)-CH=CH-CH(2)-CO](n) (1, n=2; 2, n=3; 3, n=4) and cyclo-[NH-CH(2)-CH(2)-CH=CH-CO](3) (4) has been achieved by two approaches. A linear route leads to precursors that are subsequently macrocyclized in a separate step. The second, convergent approach relies on the symmetry of the targets: it includes suitably activated subunits, which are subjected to macrocyclization conditions. The subunits first oligomerize, then cyclize to form either pure macrolactams or mixtures. The macrolactam units 1, 2 and 4 stack on top each other through weak interactions (hydrogen bond and van der Waals), to form endless square, rectangular and triangular prisms, respectively. These stacks are further packed side by side in crystals grown from isotropic media. The overall dipoles in the crystals from lactams 1 and 4, which result mostly from the alignment of amide groups, are zero and large, respectively. Macrolactam 2 displays an astonishing isomorphism when allowed to cool down in anisotropic liquid crystal solutions. Large hollow hexagonal tubes are then obtained through a fractal process. Contrary to the three previous rings, 3 yields crystals where prisms of any shape are absent.     

Intramolecular silicon-assisted cross-coupling reactions: general synthesis of medium-sized rings containing a 1,3-cis-cis diene unit

The combination of ring-closing metathesis and Pd-catalyzed, silicon-assisted intramolecular cross-coupling has been developed to provide an effective and powerful method for construction of medium-sized rings with an internal 1,3-cis-cis diene unit. Allylic alcohols bearing a Z-iodoalkenyl tether can be silylated with chlorodimethylvinylsilane and subjected to Mo-catalyzed ring-closing metathesis to form unsaturated siloxanes. Activation of the siloxane with tetrabutylammonium fluoride in the presence of [allylPdCl](2) leads to high yielding ring-closing reactions to form 9-, 10-, 11- and 12-membered rings. Extension to the synthesis of 9-membered ring unsaturated ethers has also been accomplished. Noteworthy features of this process include: (1) a highly stereospecific intramolecular coupling process, (2) flexible positioning of the hydroxy group, and (3) potential extension to other medium-sized carbocycles and heterocycles.     

Growth format, electronic architecture, magnetic, and optical properties of aromatic cyclo-Cu3Au3 homotops

Bimetallic Cu(3)Au(3) clusters have been investigated using electronic structure calculation techniques (DFT) to understand their electronic, magnetic, and optical properties as well as the geometrical structures. The most stable homotop is the planar cyclo-[Cu(3)(micro-Au)(3)] form consisting of a triangular positively charged Cu(3) structural core with negatively charged Au atoms occupying exposed positions. This structure is characterized by the maximum number of heterobonds and peripheral positions of Au atoms. Possible growth formats of the cyclo-[Cu(3)(micro-Au)(3)] homotops have been explored following both the edge-capping and the stepwise metal atom substitution mechanism. The bonding pattern along with the density of states (DOS) plots of the cyclo-[Cu(3)(micro-Au)(3)] homotop are thoroughly analyzed and compared with those of the pure cyclo-[Cu(3)(micro-Cu)(3)] and cyclo-[Au(3)(micro-Au)(3)] clusters. Particular attention was paid on the stability of these bimetallic clusters in relation with the ring-shaped electron density distribution (aromaticity). It was found that all 3-membered metal rings exhibit significant aromatic character, which was verified by a number of established criteria of aromaticity, such as structural, energetic, magnetic (NICS profiles), and out-of-plane ring deformability criteria. The NICS (1) values correlate well with the out-of-plane ring deformation energy. Finally, a comprehensive analysis of the optical spectra of the CuAu, Cu(2), and Au(2) diatomics and the cyclo-[Cu(3)(micro-Au)(3)], cyclo-[Cu(3)(micro-Cu)(3)], and cyclo-[Au(3)(micro-Au)(3)] clusters placed the electronic assignments of the optical transitions on a firm footing.     

Synthesis, reactivity, electrochemical behavior, and crystal structure of a family of multivalent metal carbido-carbonyl clusters based on the rh(10)(c)(2)au(4-6) framework

Six metal carbido-carbonyl clusters have been isolated and recognized as members of a multivalent family based on the dioctahedral Rh(10)(C)(2) frame, with variable numbers of CO ligands, AuPPh(3) moieties, and anionic charge: [Rh(10)(C)(2)(CO)(x)(AuPPh(3))(y)](n-) (x = 18, 20; y = 4, 5, 6; n = 0, 1, 2). Anions [Rh(10)(C)(2)(CO)(18)(AuPPh(3))(4)](-) ([2](-)) and [Rh(10)(C)(2)(CO)(18)(AuPPh(3))(4)](2-) ([2](2-)) have been obtained by the reduction of [Rh(10)(C)(2)(CO)(18)(AuPPh(3))(4)] (2) under N(2), while [Rh(10)(C)(2)(CO)(18)(AuPPh(3))(5)](-) ([3](-)) was obtained from [Rh(10)(C)(2)(CO)(20)(AuPPh(3))(4)] (1) by reduction under a CO atmosphere. [3](-) can be better obtained by the addition of AuPPh(3)Cl to [2](2-). [Rh(10)(C)(2)(CO)(18)(AuPPh(3))(6)] (4) is obtained from [3](-) and 2 as well by the reduction and subsequent addition of AuPPh(3)Cl. The molecular structures of [2](2-) ([NBu(4)](+) salt), [3](-) ([NMe(4)](+) salt), and 4 have been determined by single-crystal X-ray diffraction. The redox activities of complexes 1, 2 and [3](-) have been investigated by electrochemical and electron paramagnetic resonance (EPR) techniques. The data from EPR spectroscopy have been accounted for by theoretical calculations.     

Reactions of a quintuply bonded chromium dimer with alkynes

Quintuply bonded [(H)L(iPr)Cr](2) reacts with alkynes RC≡CR (R = Me, Et, Ph, CF(3)) to form exclusively 1?:?1 adducts [(H)L(iPr)Cr](2)(RCCR). All products feature relatively short Cr-Cr distances (1.919-1.962 ?) and elongated C-C bonds (1.315-1.436 ?), consistent with [2+2] cycloaddition reactions. The hydrocarbon adducts are 4-membered metallacycles, the bridging alkynes of which are progressively skewed with respect to the Cr-Cr axis. In contrast, perfluoroalkyne adds across the metal ligand moiety.     

环[(-L-Phe^1-D-Ala^2)~n-]自装配的结构特征

运用分子力学和半经验分子转产AM1方法研究了环[(-L-Phe^1-D-Ala^2)~n-]和环[(-L-Phe^1-D-^M^eN-Ala^2)~n-](n=3～6)的结构,揭示了这类分子能够进行自装配过程的结构特征,详细讨论了取代基和环的大小对结构和自装配过程的影响。     

Metal clips induce folding of a short unstructured peptide into an alpha-helix via turn conformations in water. Kinetic versus thermodynamic products

Short peptides corresponding to two to four alpha-helical turns of proteins are not thermodynamically stable helices in water. Unstructured octapeptide Ac-His1-Ala2-Ala3-His4-His5-Glu6-Leu7-His8-NH(2) (1) reacts with two [Pd((15)NH(2)(CH(2))(2)(15)NH(2))(NO(3))(2)] in water to form a kinetically stable intermediate, [[Pden](2)[(1,4)(5,8)-peptide]](2), in which two 19-membered metallocyclic rings stabilize two peptide turns. Slow subsequent folding to a thermodynamically more stable two-turn alpha-helix drives the equilibrium to [[Pden](2)[(1,5)(4,8)-peptide]] (3), featuring two 22-membered rings. This transformation from unstructured peptide via turns to an alpha-helix suggests that metal clips might be useful probes for investigating peptide folding.     

Self-assembly of a cyclic metalladecapyridine from the reaction of 2,6-bis(bis(2-pyridyl)methoxymethane)pyridine with silver(I)

Reaction of Ag( p-MeC 6H 4SO 3) with 2,6-bis(bis(2-pyridyl)methoxymethane)pyridine (PY5) in CH 2Cl 2 gave [Ag (I) 2(PY5) 2](p-MeC 6H 4SO 3) 2 (1). Treatment of 2,6-bis(bis(2-pyridyl)hydroxymethane)pyridine (PY5-OH) with AgNO 3 in MeOH gave [Ag (I) 2(PY5-OH) 2](NO3) 2 (2); in the presence of PPh 3, this reaction afforded [Ag (I)(PY5-OH)(PPh 3)]NO 3 (3). The structures of 1- 3 have been determined by X-ray crystal analysis, revealing four-coordinate Ag (I) ions in these complexes. Both 1 and 2 feature a quadruply branched 28-membered C 16N 10M 2 metallamacrocycle fused to 10 pyridyl groups. On the basis of (1)H NMR measurements, the dinuclear 1 and 2 dissociate into a mononuclear complex upon dissolving in MeCN but in MeOH an equilibrium between the mono- and dinuclear species can be detected.     

Template-assisted ligand encapsulation; the impact of an unusual coordination geometry on a supramolecular pyridylphosphine-Zn(II)porphyrin assembly

The tris(para-pyridyl)phosphine template (1) has been used in conjunction with a series of meso-substituted Zn(II)-tetraphenylporphyrins complexes (2-10) to create supramolecular encapsulated ligand assemblies via Zn-N(pyr) interactions. The structural features of supramolecular ligand 1.[2](3) have been investigated in detail using X-ray crystallography, NMR specroscopy, and UV-vis spectroscopy. The pyridylphosphine-porphyrin stoichiometry determined in solution (1:3) differs markedly with that observed in the solid state (2:5, for assembly [1](2).[2](5)). The difference originates from an unusual coordination behavior of one of the Zn centers, which is octahedrally surrounded through double axial coordination by the pyridyl groups of the two different molecules of 1.     

Oxidative homolysis of a nitrosylchromium complex

Metal(III)-polypyridine complexes [M(NN)(3)](3+) (M = Ru or Fe; NN = bipyridine (bpy), phenanthroline (phen), or 4,7-dimethylphenanthroline (Me(2)-phen)) oxidize the nitrosylpentaaquachromium(III) ion, [Cr(aq)NO](2+), with an overall 4:1 stoichiometry, 4 [Ru(bpy)(3)](3+) + [Cr(aq)NO](2+) + 2 H(2)O --> 4 [Ru(bpy)(3)](2+) + [Cr(aq)](3+) + NO(3)(-) + 4 H(+). The kinetics follow a mixed second-order rate law, -d[[M(NN)(3)](3+)]/dt = nk[[M(NN)(3)](3+)][[Cr(aq)NO](2+)], in which k represents the rate constant for the initial one-electron transfer step, and n = 2-4 depending on reaction conditions and relative rates of the first and subsequent steps. With [Cr(aq)NO](2+) in excess, the values of nk are 283 M(-1) s(-1) ([Ru(bpy)(3)](3+)), 7.4 ([Ru(Me(2)-phen)(3)](3+)), and 5.8 ([Fe(phen)(3)](3+)). In the proposed mechanism, the one-electron oxidation of [Cr(aq)NO](2+) releases NO, which is further oxidized to nitrite, k = 1.04x10(6) M(-1) s(-1), 6.17x10(4), and 1.12x10(4) with the three respective oxidants. Further oxidation yields the observed nitrate. The kinetics of the first step show a strong correlation with thermodynamic driving force. Parallels were drawn with oxidative homolysis of a superoxochromium(III) ion, [Cr(aq)OO](2+), to gain insight into relative oxidizability of coordinated NO and O(2), and to address the question of the "oxidation state" of coordinated NO in [Cr(aq)NO](2+).     

Single turn peptide alpha helices with exceptional stability in water

Cyclic pentapeptides are not known to exist in alpha-helical conformations. CD and NMR spectra show that specific 20-membered cyclic pentapeptides, Ac-(cyclo-1,5) [KxxxD]-NH(2) and Ac-(cyclo-2,6)-R[KxxxD]-NH(2), are highly alpha-helical structures in water and independent of concentration, TFE, denaturants, and proteases. These are the smallest alpha-helical peptides in water.     

Generation of alkoxide anions from a series of aliphatic diols and alcohols and their ion-molecule reactions with carbon dioxide in the gas phase

Alkoxide anions, [M-H](-) from a series of aliphatic diols and alcohols are generated in the source under negative ion electrospray ionisation conditions by cone-voltage fragmentation of the corresponding [M + F](-) ions. The collision-induced dissociation (CID) spectra of [M-H](-) ions consist of [M-H-2H](-) ions, in addition to the other characteristic fragment ions, and the relative abundance of [M-H-2H(-) ions among the series of diols varies as a function of chain length that could be explained based on their stabilities through intramolecular hydrogen bonding. The reactivity of alkoxide anions is studied through ion-molecule reactions with CO(2) in the collision cell of a triple quadrupole mass spectrometer. All the alkoxide anions reacted with CO(2) and formed corresponding carbonate anions, [M-H + CO(2)](-) ions. The reactivity of alkoxide anions within the series of diols also reflected the stability of their [M-H](-) ions.     

Reactions of in situ generated hydrated organotin cations with chelating O,O- or O,N-ligands: a possible structure-directing influence of the organic substituent on tin

The reaction of [n-Bu(2)SnO](n) with 1,5-naphthalenedisulfonic acid tetrahydrate in a 1:1 stoichiometry followed by reaction with 2,2'-bipyridine-N,N'-dioxide (BPDO-I) afforded a 1D-coordination polymer [n-Bu(2)Sn(BPDO-I)(1,5-C(10)H(6)(SO(3))(2))](n) (1) where the disulfonate ligand acts as a bridging ligand between two tin centers. An analogous reaction involving [Ph(2)SnO](n) afforded a trihydrated O,O'-chelated diorganotin cation [{Ph(2)Sn(BPDO-I)(H(2)O)(3)}(2+)][C(10)H(6)(SO(3)(-))(2)]·2CH(3)OH (2·2CH(3)OH). Utilizing two equivalents of BPDO-I in this reaction resulted in the ionic complex [{Ph(2)Sn(BPDO-I)(2)(H(2)O)}(2+)][C(10)H(6)(SO(3)(-))(2)]·3H(2)O (3·3H(2)O). In 2 and 3 the sulfonate ligands are not present in the coordination sphere of tin. Reaction of [n-Bu(2)SnO](n) and 1,5-naphthalenedisulfonic acid tetrahydrate, followed by reaction with [bis(diphenylphosphoryl)methane (DPPOM)] resulted in the formation of, [{n-Bu(2)Sn(DPPOM)(2)(H(2)O)(1,5-C(10)H(6)(SO(3))(SO(3)(-))}]·H(2)O (4·H(2)O). Of the two coordinating groups present in DPPOM, only one P=O group is coordinated to the tin atom. The remaining P=O motif is free and is involved in intramolecular H-bonding with the tin-bound water molecule. Using [Ph(2)SnO](n) instead of [n-Bu(2)SnO](n) afforded the ionic complex [{Ph(2)Sn(DPPOM)(2)}(2+){1,5-C(10)H(6)(SO(3)(-))(2)}] (5) where the DPPOM functions as a chelating ligand. The reaction of [n-Bu(2)SnO](n) with 1,5-naphthalenedisulfonic acid tetrahydrate followed by addition of one equivalent of 8-hydroxyquinoline (8-HQ) in presence of triethylamine afforded the neutral dinuclear complex, [(H(2)O)(8-Q)n-Bu(2)Sn(μ-1,5-C(10)H(6)(SO(3))(2))n-Bu(2)Sn(8-Q)(H(2)O)] (6) where the two tin atoms are bridged by the disulfonate ligand. Compounds 1-6 are thermally stable as shown by their thermogravimetric analyses.     

Self-assembly of coordination polymers: evidence for dynamic exchange between oligomers in solution and the isolation of a homochiral decagold(I) oligomer

Reactions of the precursor molecules [Au2(mu-BINAP)(O2CCF3)2], 1a, racemic BINAP, 1b, S-BINAP (BINAP = 2,2'-bis(diphenylphosphino)-1,1'-binaphthyl) with the easily exchanged linear bis(pyridine) ligand 1,2-trans-bis(4-pyridyl)ethylene (bipyen) gave the polymeric complex [{Au2(mu-R-BINAP)0.5(mu-S-BINAP)0.5(mu-bipyen)}n](CF3CO2)2n, 2a, but either the polymer [{Au2(mu-S-BINAP)(mu-bipyen)}n](CF3CO2)2n, 2b, or the remarkable oligomeric [Au10(mu-S-BINAP)5(mu-bipyen)4(kappa1-bipyen)2](CF3CO2)10, 3, respectively. The type of oligomer 3 is a missing link in the ring-opening polymerization of macrocyclic coordination compounds.     

Stabilization of excess charge in isolated adenosine 5'-triphosphate and adenosine 5'-diphosphate multiply and singly charged anions

Multiply charged anions (MCAs) represent highly energetic species in the gas phase but can be stabilized through formation of molecular clusters with solvent molecules or counterions. We explore the intramolecular stabilization of excess negative charge in gas-phase MCAs by probing the intrinsic stability of the [adenosine 5'-triphosphate-2H](2-) ([ATP-2H](2-)), [adenosine 5'-diphosphate-2H](2-) ([ADP-2H](2-)), and H(3)P(3)O(10)(2-) dianions and their protonated monoanionic analogues. The relative activation barriers for decay of the dianions via electron detachment or ionic fragmentation are investigated using resonance excitation of ions isolated within a quadrupole trap. All of the dianions decayed via ionic fragmentation demonstrating that the repulsive Coulomb barriers (RCB) for ionic fragmentation lie below the RCBs for electron detachment. Both the electrospray ionization mass spectra (ESI-MS) and total fragmentation energies for [ATP-2H](2-), [ADP-2H](2-), and H(3)P(3)O(10)(2-) indicate that the multiply charged H(3)P(3)O(10)(2-) phosphate moiety is stabilized by the presence of the adenosine group and the stability of the dianions increases in the order H(3)P(3)O(10)(2-) < [ADP-2H](2-) < [ATP-2H](2-). Fully optimized, B3LYP/6-31+G* minimum energy structures illustrate that the excess charges in all of the phosphate anions are stabilized by intramolecular hydrogen bonding either within the phosphate chain or between the phosphate and the adenosine. We develop a model to illustrate that the relative magnitudes of the RCBs and hence the stability of these ions is dominated by the extent of intramolecular hydrogen bonding.     

Initial example of a triangular single-molecule magnet from ligand-induced structural distortion of a [MnIII3O]7+ complex

The reaction of [Mn3O(O2CR)6(py)3](ClO4) (R = Me, Et) with methyl 2-pyridyl ketone oxime (mpkoH) in a 1:3 molar ratio in MeOH/MeCN leads to [Mn3O(O2CR)3(mpko)3](ClO4) in 80-90% isolated yield. Ferromagnetic exchange interactions between the three MnIII ions in the nonplanar [MnIII3O]7+ triangular core lead to a spin ground state of S = 6; single-crystal studies reveal the temperature and sweep rate dependent hysteresis loops expected for a single-molecule magnet.