Theoretical study of the dimers of ferriporphyrin analogues (MC34H31N4O4)2 and their positive ions with 3d-metal atoms M

The electronic and geometric structures and the energetic characteristics of isolated dimeric molecules and positive ions of ferriporphyrin analogues (MC₃₄H₃₁O₄N₄)₂^0,+ and corresponding monomers MC₃₄H₃₁O₄N₄^0,+ with 3d-metal atoms M = Sc-Ni in states with different multiplicities were calculated by the density functional theory B3LYP method with the Gen-1 = 6-31G*(Fe) + 6-31G(C,H,N,O) basis set. Their energies were refined with the use of the extended basis set Gen-2 = 6-311+G*(Fe) + 6-31G*(C,H,N,O). The computation results were compared with the analogous calculated data on the dimers of heme analogues (MC₃₄H₃₂O₄N₄)₂^0,+ and MC₃₄H₃₂O₄N₄^0,+ with the same M atoms. The behavior of the above-mentioned properties was analyzed in going along the 3d series, upon ionization and a change in multiplicity, and in other related series. Trends were traced in the calculated energies D ₁ of dissociation of the ferriporphyrin analogue dimers into monomers, (MC₃₄H₃₁O₄N₄)₂^0,+ → MC₃₄H₃₁O₄N₄^0,+MC₃₄H₃₁O₄N₄⁰, and in the energies D ₂ of removal of two hydrogen atoms from heme analogue dimers resulting in ferriporphyrin analogues, (MC₃₄H₃₂O₄N₄)₂^0,+ → (MC₃₄H₃₁O₄N₄)₂^0,+ + 2H. It was shown that, in going along the 3d series, the D ₁ energy rapidly decreases from ∼210 kcal/mol for M = Sc to a few tens of kcal/mol for M = Ni, with a small minimum for Mn and a small maximum for Fe, as the energy of the pair of broken covalent (polar) bonds M-O decreases. Conversely, the D ₂ energy increases rapidly and rather monotonically from ∼45 kcal/mol for M = Sc to ∼135 kcal/mol for M = Fe, as the difference between the energies of the pair of forming covalent bonds M-O and the pair of broken donor-acceptor bonds M ← O decreases. For the positive ions, the D ₁ and D ₂ values are, as a rule, 5–10 kcal/mol higher than those for the parent neutral analogues. The character of the spin density distribution in states with different multiplicities was considered. Original Russian Text ? O.P. Charkin, 2009, published in Zhurnal Neorganicheskoi Khimii, 2009, Vol. 54, No. 4, pp. 655–665.     

Theoretical study of the structure and stability of the heme dimer (FeC34H32N4O4)2 and its ion (FeC34H32N4O4) 2+

The electronic and geometric structures and the dissociation energies of the isolated molecule of heme dimer (heme)₂ = (FeC₃₄H₃₂O₄N₄)₂ and its ion (heme) ₂ ⁺ = (FeC₃₄H₃₂O₄N₄) ₂ ⁺ in the states with different multiplicities have been calculated by the density functional theory B3LYP method with the Gen-1 = 6-31G*(Fe) + 6-31G(C,H,N,O) and Gen-2 = 6-311++G*(Fe) + 6-31G*(C,H,N,O) basis sets. The computation results are compared with the analogous calculated data on monomeric heme and hemin⁺, as well as the previously considered dimeric ferriporphyrin X molecule and ion FeC₃₄H₃₁O₄N₄) ₂ ^{0, +} . In the heme dimer cation (heme) ₂ ⁺ , which is identified in mass spectra, the rings are linked with each other by a pair of Fe carbonyl bridges Fe⋯O_b = C(OH) and a pair of hydrogen bridges OH_b⋯N. According to the calculations, the most favorable state for (heme) ₂ ⁺ is the sextet in which five unpaired electrons are approximately uniformly distributed over the metal atoms, whereas the states with higher multiplicities 8 and 10 are, respectively, 0.15 and 0.20 eV higher on the energy scale. For the neutral dimer (heme)₂, the quintet is favorable in which each of the two Fe atoms has two unpaired electrons, and the states with the higher multiplicities 7 and 9 are only 0.10–0.15 eV higher. The calculated energies of dissociation D of the dimers into monomers point to a rather high stability of the (heme) ₂ ⁺ (D ∼ 1.4 1.4eV) and to a low stability of the neutral dimer (heme)₂ (D ∼ 0.3 eV). The R(Fe⋯O_b) distances in the bridges in (heme) ₂ ⁺ are 0.2–0.4 ? shorter than in (heme)₂. The trends in the behavior of the energetic and structural characteristics of the dimers (R(Fe-N), displacements of Fe atoms from the porphyrin ring plane, character of ring distortions, etc.) associated with the involvement of the and AOs of Fe atoms in bonding, as well as the spin density distribution over the Fe atoms and the rings, are analyzed as a function of the multiplicity and charge of the system. Differences in the character of interaction of the heme and ferriporphyrin dimers with molecular oxygen are discussed. Original Russian Text ? O.P. Charkin, N.M. Klimenko, D.O. Charkin, S.H. Lin, 2007, published in Zhurnal Neorganicheskoi Khimii, 2007, Vol. 52, No. 7, pp. 1166–1174.     

Pd(PBu 3 t ) Adducts of Os3(CO)12. Synthesis and Structures of Pd2Os3(CO)12(PBu 3 t )2 and Pd3Os3(CO)12 (PBu 3 t )3

Two new compounds Pd₂Os₃(CO)₁₂ , 13 and Pd₃Os₃(CO)₁₂ , 14 have been obtained from the reaction of with Os₃(CO)₁₂ at room temperature. The products were formed by the addition of two and three groups to the Os–Os bonds of Os₃(CO)₁₂. Compounds 13 and 14 interconvert between themselves by intermolecular exchange of the groups in solution. Compounds 13 and 14 have been characterized by single crystal X-ray diffraction analyses.Dedicated to Professor Brian F. G. Johnson on the occasion of his retirement – 2005.     

Hydrothermal synthesis and characterization of a new 3D vanadium(III) phosphite (C4H8N2H4)0.5(C4H8N2H3)[V4(HPO3)7(H2O)3]1.5H2O

A new vanadium(III) phosphite, (C₄H₈N₂H₄)_0.5(C₄H₈N₂H₃)[V₄(HPO₃)₇(H₂O)₃]1.5H₂O, has been synthesized hydrothermally by using V₂O₅, H₃PO₃ as reactants, piperazine as the structure-directing agent. The as-synthesized product was characterized by powder X-ray diffraction, IR spectroscopy, inductively coupled plasma analysis, thermogravimetric analysis, and SQUID magnetometer. Single-crystal X-ray diffraction analysis shows that the title compound crystallized in the trigonal space group (No. 165) with the parameters: , , and Z=4. Its structure is built up by alternation of octahedral VO₆ or VO₅(H₂O) and pseudo-pyramidal HPO₃ units to form infinite 2D layers, and these layers are interconnected by sharing vertex-oxygen with octahedral VO₆ units to generate a 3D open-framework structure with 12-membered ring channels in a and b directions, respectively, where there exist entrapped diprotonated and mono-protonated piperazine cations, and water molecules. Magnetic measurement indicates that paramagnetic behavior is observed down to 4 K.     

Combinatorial topology of uranyl molybdate sheets: syntheses and crystal structures of (C6H14N2)3[(UO2)5(MoO4)8](H2O)4 and (C2H10N2)[(UO2)(MoO4)2]

Two new mixed organic-inorganic uranyl molybdates, (C₆H₁₄N₂)₃[(UO₂)₅(MoO₄)₈](H₂O)₄ (1) and (C₂H₁₀N₂)[(UO₂)(MoO₄)₂] (2), have been obtained by hydrothermal methods. The structure of 1 [triclinic, , Z=1, a=11.8557(9), b=11.8702(9), c=12.6746(9) Å, α=96.734(2)°, β=91.107(2)°, γ=110.193(2)°, V=1659.1(2) Å] has been solved by direct methods and refined on the basis of F² for all unique reflections to R1=0.058, which was calculated for the 5642 unique observed reflections (|F_o|?4σ_F). The structure contains topologically novel sheets of uranyl square bipyramids, uranyl pentagonal bipyramids, and MoO₄ tetrahedra, with composition [(UO₂)₅(MoO₄)₈]⁶⁻, that are parallel to (−101). H₂O groups and 1,4-diazabicyclo [2.2.2]-octane (DABCO) molecules are located in the interlayer, where they provide linkage of the sheets. The structure of 2 [triclinic, , Z=2, a=8.4004(4), b=11.2600(5), c=13.1239(6) Å, α=86.112(1)°, β=86.434(1)°, γ=76.544(1)°, V=1203.14(10) Å] has been solved by direct methods and refined on the basis of F² for all unique reflections to R1=0.043, which was calculated for 5491 unique observed reflections (|F_o|?4σ_F). The structure contains topologically novel sheets of uranyl pentagonal bipyramids and MoO₄ tetrahedra, with composition [(UO₂)(MoO₄)₂]²⁻, that are parallel to (110). Ethylenediamine molecules are located in the interlayer, where they provide linkage of the sheets. All known topologies of uranyl molybdate sheets of corner-sharing U and Mo polyhedra can be described by their nodal representations (representations as graphs in which U and Mo polyhedra are given as black and white vertices, respectively). Each topology can be derived from a simple black-and-white graph of six-connected black vertices and three-connected white vertices by deleting some of its segments and white vertices.     

Synthesis and physicochemical study of di(1,3,7-trimethylpurine-2,6-dione) 12-tungstosilicate (C8N4O2H11)2H2SiW12O40

The di(1,3,7-trimethylpurine-2,6-dione) dihydrogen 12-tungstosilicate (C₈N₄O₂H₁₁)₂H₂SiW₁₂O₄₀ (I) was synthesized and studied using chemical methods, IR and ¹H NMR spectroscopy, X-ray phase analysis, and the thermogravimetry technique.     

Theoretical study of the structure and stability of the Na2Cl+, NaCl 2? , Na3Cl 2+ , and Na2Cl 3? ions

The geometrical parameters, normal vibration frequencies, and thermochemical characteristics of the Na₂Cl⁺, NaCl ₂ ⁻ , Na₃Cl ₂ ⁺ , and Na₂Cl ₃ ⁻ ions in saturated vapors over sodium chloride were calculated by the ab initio methods including electron correlation. According to calculations, the Na₂Cl⁺ and NaCl ₂ ⁻ triatomic ions have a linear equilibrium D _∞h configuration. The pentaatomic ions can exist in the form of the D _∞h linear isomer, C _2v planar cyclic isomer, or D _3h bipyramidal isomer. At ∼1000 K the Na₃Cl ₂ ⁺ and Na₂Cl ₃ ⁻ ions exist predominantly in the form of the linear isomers. The energies and enthalpies of the ion-molecule reactions involving the above ions were calculated. The formation enthalpy of the ions Δ_f H ⁰(0 K) was determined: 230 ± 2 kJ/mol (Na₂Cl⁺), −96 ± 4 kJ/mol (Na₂Cl ₃ ⁻ ), −616 ± 2 kJ/mol (NaCl ₂ ⁻ ), and −935 ± 4 kJ/mol (Na₂Cl ₃ ⁻ ). Original Russian Text Copyright ? 2007 by T. P. Pogrebnaya, A. M. Pogrebnoi, and L. S. Kudin __________ Translated from Zhurnal Strukturnoi Khimii, Vol. 48, No. 6, pp. 1053–1061, November–December, 2007.     

Synthesis and crystal structure of Ir(C2H4)2(C5H7O2)

We report a new synthesis and characterization of Ir(C₂H₄)₂(C₅H₇O₂) [(acetylacetonato)-bis(η²-ethene)iridium(I)], prepared from (NH₄)₃IrCl₆ · H₂O in a yield of about 45%. The compound has been characterized by X-ray diffraction crystallography, infrared, Raman, and NMR spectroscopies and calculations at the level of density functional theory. Ir(C₂H₄)₂(C₅H₇O₂) is isostructural with Rh(C₂H₄)₂(C₅H₇O₂), but there is a substantial difference in the ethylene binding energies, with Ir-ethylene having a stronger interaction than Rh-ethylene; two ethylenes are bound to Ir with a binding energy of 94 kcal/mol and to Rh with a binding energy of 70 kcal/mol.     

Cis-trihetero-tris-σ-homobenzenes as tridentate ligands - X-ray crystal. Structure analyses of the Co(C6H9N3)2(NO3)3 and Ba(C6H6O3)4(ClO4)2-complexes

According to X-ray crystal structure analyses “cis-benzenetrisimine” ($\text{2}$) and “cis-benzenetrioxide” ($\text{1}$) act as tridentate ligands in their 2:1- and 4:1-complexes $\text{7}$ (Co(C₆H₉N₃)₂(NO₃)₃) and $\text{8}$ (Ba(C₆H₆O₃)₄(ClO₄)₂), resp. The latter is the rare example of an organic complex with the (approximate) T-symmetry.     

Effect of ligands on the thermolysis of the double complexes [Co(NH3)6]2C2O4[Cu(C2O4)2]2 and [Co(NH3)6]Cl[Cu(C7H4O3)2]

The thermolysis of the complexes [Co(NH₃)₆]₂C₂O₄[Cu(C₂O₄)₂]₂ (I) and [Co(NH₃)₆]Cl[Cu(C₇H₄O₃)₂] (II) in air and hydrogen at 200, 350, and 500°C and the composition and properties of the thermolysis products are considered. The oxidative thermolysis of the complexes yields mixtures of cobalt and copper oxides, including mixed ones. The reductive thermolysis of the complexes yields a Co + Cu bimetallic powder in the case of compound I and a Co + Cu + C powder in the case of compound II. The thermal behavior of the complexes is governed by the nature of the ligand coordinated to the copper atom. The observed data are explicable in terms of the properties of this ligand. The chemistry of the oxidative and reductive thermolysis is discussed. Original Russian Text ? D.P. Domonov, S.I. Pechenyuk, N.L. Mikhailova, A.T. Belyaevskii, 2007, published in Zhurnal Neorganicheskoi Khimii, 2007, Vol. 52, No. 7, pp. 1104–1110.     

Electronic structure and reactivity of PO 43? , P2O 74? phosphate and SO 42? , S2O 72? sulfate anions

Group-theoretical analysis and molecular orbital methods were used to obtain (in analytical form) the electronic structure and reactivity of the PO ₄ ³⁻ , SO ₄ ²⁻ and P₂O ₇ ⁴⁻ , S₂O ₇ ²⁻ anions. The reactivity of the anions is dictated by the availability of lone electron pairs on the top quasidegenerate MOs in the form of linear combinations of group orbitals from atomic orbitals (AOs) of peripheral oxygen atoms for PO ₄ ³⁻ , SO ₄ ²⁻ and the central (bridging) atom for P₂O ₇ ⁴⁻ , S₂O ₇ ²⁻ . These electron pairs are responsible for the donor-acceptor interactions during complexation, clustering, and other (addition, substitution, etc.) reactions. Original Russian Text Copyright ? 2005 V. A. Zasukha, A. P. Shpak, V. V. Trachevskii, and E. V. Urubkova __________ Translated from Zhurnal Strukturnoi Khimii, Vol. 46, No. 3, pp. 405–415, May–June, 2005.     

Crystal structure of [Mn(1,10-C12H8N2)3](B6H7)2

A new compound [MN^II(Phen)₃]²⁺(B₆H₇)₂⁻ is synthesized; its crystal structure is studied by XRD at 100 K. Crystallographic data: C₃₆H₃₈B₁₂N₆Mn, M = 739.39, triclinic symmetry, space group P , unit cell parameters: a = 10.3131(3) ?, b = 13.4839(4) ?, c = 15.1132(4) ?; α = 97.696(1)°, β = 108.324(1)°, γ = 102.211(1)°; V = 1903.9(1) ?³, Z = 2, d _calc = 1.290 g/cm³. The structure is solved by direct and Fourier methods and refined by full-matrix LSM in the anisotropic (isotropic for hydrogen atoms) approximation to the final factor R ₁ = 0.036 for 10169 I _hkl ≥ 2σ _I (Bruker-Nonius X8 APEX CCD diffractometer, λMoK _α). The structure contains two crystallographically different anions. Original Russian Text Copyright ? 2009 by T. M. Polyanskaya, M. K. Drozdova, V. V. Volkov, and K. G. Myakishev __________ Translated from Zhurnal Strukturnoi Khimii, Vol. 50, No. 2, pp. 381–385, March–April, 2009.     

Synthesis and X-ray structure of the Mo(VI) species Mo4O12(C12H30N4S2)2(C3H7ON)n (n ≈ 2)

Dissolution of Mo₂O₅((CH₃)₂NCH₂CH₂NHCH₂CH₂S)₂ in dimethylformamide results in the formation of a species without coordinated sulphur, as indicated by ⁹⁵Mo NMR spectroscopy. Subsequent crystallization of this solution yielded the compound Mo₄O₁₂(C₁₂H₃₀N₄S₂)₂(C₃H₇ON)₂ which X-ray crystallography shows to consist of a novel Mo₄O₁₂ core, containing an eight-membered Mo₄O₄ ring with the two pairs of diagonal molybdenum atoms linked by disulphido-containing groups.     

(C5H5FeS1,55)4: Ein neuartiger vierkerniger Fe-S-Cluster in einer (C5H5FeS)4-Matrix

Ohne Zusammenfassung

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(C₅H₅FeSi_1.5)₄: A new quadrinuclear Fe-S cluster in a (C₅H₅FeS)₄ matrix

     

Synthesis and Structure of a New Organic-Inorganic Framework with Tetranuclear Clusters, [Co4(OH)2(H2O)2](C4H11N2)2[C6H2(COO)4]2·3H2O

A new hybrid organic-inorganic three-dimensional compound, [Co₄(OH)₂(H₂O)₂](C₄H₁₁N₂)₂[C₆H₂(CO₂)₄]₂·3H₂O 1, has been synthesized via hydrothermal reactions and characterized by single-crystal X-ray diffraction, infrared spectroscopy, thermogravimetric analysis, and magnetic techniques. Compound 1 crystallizes in the monoclinic space group P2₁/n (no. 14) with a=6.3029(9) Å, b=16.413(2) Å, c=17.139(2) Å, β=98.630(2)°, V=1735.0(4) ų, Z=2. Compound 1 contains tetranuclear Co₄(μ₃-OH)₂(H₂O)₂ clusters that are inter-linked by pyromellitate bridging ligands into a three-dimensional structure containing one-dimensional tunnels along the a-axis with water and pendant monoprotonated piperazine molecules in the center. The variable temperature magnetic susceptibility was measured from 2 to 300 K at 5000 Oe showing a predominantly anti-ferromagnetic interaction in 1, and the field dependence of magnetization was measured at 2, 5, 15, and 20 K indicating the competition of magnetic interactions in the tetranuclear centers.     

Magic cluster ion distributions: (NO)3+ (N2O)n and (NO)3+ (CO2)n

Supersonic jet expansions of mixtures of nitric oxide with either nitrous oxide or carbon dioxide have been investigated over a wide range of relative concentrations. Mixed molecular cluster ions of the form (NO) _m ⁺ (N₂O)_n and (NO) _m ⁺ (CO₂)_n are detected following non-resonant two-photon ionization. Over a wide range of intermediate concentrations, the cluster ion distributions (NO) ₃ ⁺ (N₂O)_n and (NO) ₃ ⁺ (CO₂)_n with n30 are significantly more intense than clusters containing other numbers of nitric oxide molecules. The extra abundance of these species is attributed to their especially stable structures and several possible forms are discussed. An intriguing possibility involves a stable cyclic nitric oxide trimer (or ion) when combined with nitrous oxide or carbon dioxide clusters.     

Synthesis, structural characterization, and magnetic properties of the metallamacrocycle [Fe6(C11H11N2O3)6(C4H9NO)6]

Abstract  

The 18-metallacrown-6 metallamacrocycle [Fe₆(pmshz)₆(C₄H₉NO)₆] has been synthesized by the self-assembly reaction of iron ions with N-substituted salicylhydrazide ligands. Six Fe(III) ions and six deprotonated N-propanoyl-4-methylsalicylhydrazide (H₃ pmshz) ligands construct a planar 18-membered ring based on Fe–N–N–Fe linkage. Because of the coordination, the ligand enforces the stereochemistry of the Fe(III) ions as a propeller shape with alternating …ΔΛΔΛ… configurations. There is a strong antiferromagnetic exchange interaction between the paramagnetic iron centers.